Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019820 Carpinus fangiana HOM05D003148 ORTHO05D003894 3.5e-58 228.0 112 100.0
Haze_09651 Corylus avellana HOM05D003148 ORTHO05D003894 1.0e-49 199.9 99 97.0
Cfa020382 Carpinus fangiana HOM05D003148 ORTHO05D003894 8.7e-49 196.8 97 96.9
Sabra16G0286100 Salix brachista HOM05D003148 ORTHO05D003894 4.3e-48 194.5 103 88.3
CiPaw.11G187400 Carya illinoinensis HOM05D003148 ORTHO05D003894 7.4e-48 193.7 97 94.8
CiPaw.12G128200 Carya illinoinensis HOM05D003148 ORTHO05D003894 7.4e-48 193.7 97 94.8
arahy.Tifrunner.gnm1.ann1.IVZB0M Arachis hypogaea HOM05D003148 ORTHO05D003894 1.4e-46 189.5 97 90.7
arahy.Tifrunner.gnm1.ann1.5UV8SN Arachis hypogaea HOM05D003148 ORTHO05D003894 1.8e-46 189.1 97 89.7
Potri.001G421300 Populus trichocarpa HOM05D003148 ORTHO05D003894 1.8e-46 189.1 97 91.8
Glyma.08G313400 Glycine max HOM05D003148 ORTHO05D003894 2.4e-46 188.7 102 85.3
Lj4g0014990 Lotus japonicus HOM05D003148 ORTHO05D003894 2.4e-46 188.7 97 90.7
TAR624G0080 Trochodendron aralioides HOM05D003148 ORTHO05D003894 3.1e-46 188.3 97 89.7
QL08p011843 Quercus lobata HOM05D003148 ORTHO05D003894 4.1e-46 188.0 97 90.7
Lj8A168T100 Lonicera japonica HOM05D003148 ORTHO05D003894 6.9e-46 187.2 97 88.7
Potri.011G136900 Populus trichocarpa HOM05D003148 ORTHO05D003894 1.2e-45 186.4 97 88.7
Ca_06307_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 1.5e-45 186.0 97 87.6
Lj6g0019529 Lotus japonicus HOM05D003148 ORTHO05D003894 1.5e-45 186.0 97 89.7
Medtr5g092100 Medicago truncatula HOM05D003148 ORTHO05D003894 1.5e-45 186.0 97 87.6
Haze_09649 Corylus avellana HOM05D003148 ORTHO05D003894 2.0e-45 185.7 97 91.8
Lsat_1_v5_gn_1_29100 Lactuca sativa HOM05D003148 ORTHO05D003894 2.0e-45 185.7 97 89.7
Lalb_Chr18g0049911 Lupinus albus HOM05D003148 ORTHO05D003894 2.0e-45 185.7 97 87.6
TAR624G0632 Trochodendron aralioides HOM05D003148 ORTHO05D003894 2.0e-45 185.7 104 85.6
Nn1g07107 Nelumbo nucifera HOM05D003148 ORTHO05D003894 2.6e-45 185.3 97 88.7
TAR626G0592 Trochodendron aralioides HOM05D003148 ORTHO05D003894 2.6e-45 185.3 97 87.6
CSS0045288 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 3.4e-45 184.9 97 88.7
Cc05_g13530 Coffea canephora HOM05D003148 ORTHO05D003894 3.4e-45 184.9 97 89.7
DCAR_022553 Daucus carota HOM05D003148 ORTHO05D003894 3.4e-45 184.9 97 87.6
Hma1.2p1_0938F.1_g239220 Hydrangea macrophylla HOM05D003148 ORTHO05D003894 3.4e-45 184.9 97 86.6
Lalb_Chr04g0248571 Lupinus albus HOM05D003148 ORTHO05D003894 3.4e-45 184.9 97 86.6
Phvul.006G039400 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 3.4e-45 184.9 97 87.6
TPR.G29117 Trifolium pratense HOM05D003148 ORTHO05D003894 3.4e-45 184.9 97 86.6
vmacro09733 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 3.4e-45 184.9 101 86.1
MBI02_g28334_MAGBIO Magnolia biondii HOM05D003148 ORTHO05D003894 4.5e-45 184.5 97 87.6
Rhsim04G0002300 Rhododendron simsii HOM05D003148 ORTHO05D003894 4.5e-45 184.5 97 88.7
RhsimUnG0252100 Rhododendron simsii HOM05D003148 ORTHO05D003894 4.5e-45 184.5 97 88.7
Sabra11G0122800 Salix brachista HOM05D003148 ORTHO05D003894 4.5e-45 184.5 97 87.6
Cfa020383 Carpinus fangiana HOM05D003148 ORTHO05D003894 5.9e-45 184.1 96 91.7
HanXRQChr05g0159091 Helianthus annuus HOM05D003148 ORTHO05D003894 5.9e-45 184.1 97 88.7
HanXRQChr05g0159101 Helianthus annuus HOM05D003148 ORTHO05D003894 5.9e-45 184.1 97 88.7
HanXRQChr05g0159391 Helianthus annuus HOM05D003148 ORTHO05D003894 5.9e-45 184.1 97 88.7
Psat5g183240 Pisum sativum HOM05D003148 ORTHO05D003894 5.9e-45 184.1 97 87.6
Aqoxy1G03292 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 7.6e-45 183.7 97 87.6
CDE05G0870 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 7.6e-45 183.7 97 85.6
Glyma.02G289700 Glycine max HOM05D003148 ORTHO05D003894 7.6e-45 183.7 97 87.6
Medtr3g050110 Medicago truncatula HOM05D003148 ORTHO05D003894 7.6e-45 183.7 97 86.6
Medtr3g050140 Medicago truncatula HOM05D003148 ORTHO05D003894 7.6e-45 183.7 97 86.6
Nn1g03580 Nelumbo nucifera HOM05D003148 ORTHO05D003894 7.6e-45 183.7 97 87.6
Psat2g015200 Pisum sativum HOM05D003148 ORTHO05D003894 7.6e-45 183.7 97 87.6
Rhsim06G0215400 Rhododendron simsii HOM05D003148 ORTHO05D003894 7.6e-45 183.7 97 86.6
Thecc.07G043600 Theobroma cacao HOM05D003148 ORTHO05D003894 7.6e-45 183.7 97 87.6
vmacro11740 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 7.6e-45 183.7 97 85.6
GSVIVG01014163001 Vitis vinifera HOM05D003148 ORTHO05D003894 1.0e-44 183.3 97 86.6
ECA246G3119 Erigeron canadensis HOM05D003148 ORTHO05D003894 1.3e-44 183.0 97 87.6
Phvul.008G265700 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 1.3e-44 183.0 97 85.6
Ca_14812_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 1.7e-44 182.6 97 86.6
MSTRG.14430 Avicennia marina HOM05D003148 ORTHO05D003894 2.2e-44 182.2 97 87.6
COL.COLO4_09635 Corchorus olitorius HOM05D003148 ORTHO05D003894 2.2e-44 182.2 97 86.6
Actinidia35330 Actinidia chinensis HOM05D003148 ORTHO05D003894 2.9e-44 181.8 97 86.6
Atru.chr2.3280 Acer truncatum HOM05D003148 ORTHO05D003894 3.8e-44 181.4 97 85.6
Dinv40737 Davidia involucrata HOM05D003148 ORTHO05D003894 3.8e-44 181.4 97 86.6
Ah.13g076880 Amaranthus hybridus HOM05D001433 ORTHO05D005172 5.0e-44 181.0 97 85.6
arahy.Tifrunner.gnm1.ann1.FV4ICK Arachis hypogaea HOM05D003148 ORTHO05D003894 5.0e-44 181.0 97 86.6
arahy.Tifrunner.gnm1.ann1.SAW44B Arachis hypogaea HOM05D003148 ORTHO05D003894 5.0e-44 181.0 97 86.6
EL10Ac3g07232 Beta vulgaris HOM05D003148 ORTHO05D003894 5.0e-44 181.0 97 85.6
Cpa.g.sc97.33 Carica papaya HOM05D003148 ORTHO05D003894 5.0e-44 181.0 97 87.6
Duzib213G0065 Durio zibethinus HOM05D003148 ORTHO05D003894 5.0e-44 181.0 97 85.6
Os04g0637400 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 5.0e-44 181.0 97 85.6
Glyma.14G025300 Glycine max HOM05D003148 ORTHO05D003894 6.5e-44 180.6 97 86.6
Glyma.19G036300 Glycine max HOM05D003148 ORTHO05D003894 8.5e-44 180.3 97 86.6
Hund19099 Selenicereus undatus HOM05D003148 ORTHO05D003894 8.5e-44 180.3 97 86.6
Atru.chr6.8 Acer truncatum HOM05D003148 ORTHO05D003894 1.1e-43 179.9 97 85.6
Actinidia09911 Actinidia chinensis HOM05D003148 ORTHO05D003894 1.1e-43 179.9 97 84.5
Lj1C869T19 Lonicera japonica HOM05D003148 ORTHO05D003894 1.1e-43 179.9 97 84.5
Hund24589 Selenicereus undatus HOM05D003148 ORTHO05D003894 1.1e-43 179.9 97 85.6
MSTRG.12966 Avicennia marina HOM05D003148 ORTHO05D003894 1.4e-43 179.5 97 85.6
Peaxi162Scf00450g00842 Petunia axillaris HOM05D003148 ORTHO05D003894 1.4e-43 179.5 97 86.6
AUR62030324 Chenopodium quinoa HOM05D003148 ORTHO05D003894 1.9e-43 179.1 97 83.5
Eucgr.F00964 Eucalyptus grandis HOM05D003148 ORTHO05D003894 2.5e-43 178.7 97 84.5
Manes.14G165664 Manihot esculenta HOM05D003148 ORTHO05D003894 2.5e-43 178.7 97 85.6
PGR083G0390 Punica granatum HOM05D003148 ORTHO05D003894 2.5e-43 178.7 97 84.5
SGA_v2.0_scaffold9G05063 Striga asiatica HOM05D003148 ORTHO05D003894 2.5e-43 178.7 97 83.5
Gohir.A01G078100 Gossypium hirsutum HOM05D003148 ORTHO05D003894 3.2e-43 178.3 97 84.5
Gohir.D01G065200 Gossypium hirsutum HOM05D003148 ORTHO05D003894 3.2e-43 178.3 97 84.5
Gorai.002G086900 Gossypium raimondii HOM05D003148 ORTHO05D003894 3.2e-43 178.3 97 84.5
VMungo0647G1963 Vigna mungo HOM05D003148 ORTHO05D003894 3.2e-43 178.3 97 84.5
ATR0752G224 Amborella trichopoda HOM05D003148 ORTHO05D003894 4.2e-43 177.9 97 84.5
Aqoxy3G04136 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 4.2e-43 177.9 97 84.5
Oeu042923.1 Olea europaea HOM05D003148 ORTHO05D003894 4.2e-43 177.9 97 84.5
Sc19g0008220 Simmondsia chinensis HOM05D003148 ORTHO05D003894 4.2e-43 177.9 97 84.5
Solyc07g064330.3 Solanum lycopersicum HOM05D003148 ORTHO05D003894 4.2e-43 177.9 97 85.6
Sed0003151 Sechium edule HOM05D003148 ORTHO05D003894 5.5e-43 177.6 97 85.6
PGSC0003DMG402013919 Solanum tuberosum HOM05D003148 ORTHO05D003894 5.5e-43 177.6 97 84.5
THA.LOC104817879 Tarenaya hassleriana HOM05D003148 ORTHO05D003894 5.5e-43 177.6 97 83.5
AUR62018343 Chenopodium quinoa HOM05D003148 ORTHO05D003894 7.2e-43 177.2 97 82.5
Zm00001eb431790 Zea mays HOM05D003148 ORTHO05D003894 7.2e-43 177.2 97 82.5
C05p43810 Brassica napus HOM05D003148 ORTHO05D003894 9.3e-43 176.8 97 84.5
BolC5t33096H Brassica oleracea HOM05D003148 ORTHO05D003894 9.3e-43 176.8 97 84.5
Prupe.4G209500 Prunus persica HOM05D003148 ORTHO05D003894 9.3e-43 176.8 97 84.5
TWI38G0810 Tripterygium wilfordii HOM05D003148 ORTHO05D003894 9.3e-43 176.8 97 85.6
ClCG10G005550 Citrullus lanatus HOM05D003148 ORTHO05D003894 1.2e-42 176.4 97 84.5
Nitab4.5_0013016g0020 Nicotiana tabacum HOM05D003148 ORTHO05D003894 1.2e-42 176.4 97 84.5
AL3G34360 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 1.6e-42 176.0 97 84.5
FvH4_3g22230 Fragaria vesca HOM05D003148 ORTHO05D003894 1.6e-42 176.0 97 82.5
FAN11G2520 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.6e-42 176.0 97 82.5
RcHm_v2.0_Chr5g0038301 Rosa chinensis HOM05D003148 ORTHO05D003894 1.6e-42 176.0 97 82.5
A05p28320 Brassica napus HOM05D003148 ORTHO05D003894 2.1e-42 175.6 97 83.5
BraA05t21714Z Brassica rapa HOM05D003148 ORTHO05D003894 2.1e-42 175.6 97 83.5
CAN.G337.107 Capsicum annuum HOM05D003148 ORTHO05D003894 2.1e-42 175.6 97 83.5
CARHR096300 Cardamine hirsuta HOM05D003148 ORTHO05D003894 2.1e-42 175.6 97 83.5
MELO3C000081.2 Cucumis melo HOM05D003148 ORTHO05D003894 2.7e-42 175.3 97 83.5
CsaV3_3G005270 Cucumis sativus L. HOM05D003148 ORTHO05D003894 2.7e-42 175.3 97 83.5
Sopen07g032480 Solanum pennellii HOM05D003148 ORTHO05D003894 3.6e-42 174.9 97 84.5
Aa31LG10G3300 Aethionema arabicum HOM05D003148 ORTHO05D003894 4.6e-42 174.5 97 81.4
AT3G20540 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 4.6e-42 174.5 97 83.5
Thhalv10019969m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 4.6e-42 174.5 97 81.4
Aa31LG8G7340 Aethionema arabicum HOM05D003148 ORTHO05D003894 6.1e-42 174.1 97 81.4
Carub.0003s2050 Capsella rubella HOM05D003148 ORTHO05D003894 6.1e-42 174.1 97 82.5
CDE01G0619 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 6.1e-42 174.1 99 81.8
MD11G1221900 Malus domestica HOM05D003148 ORTHO05D003894 6.1e-42 174.1 97 82.5
Sp3g18540 Schrenkiella parvula HOM05D003148 ORTHO05D003894 6.1e-42 174.1 97 82.5
BcaB02g11185 Brassica carinata HOM05D003148 ORTHO05D003894 7.9e-42 173.7 97 80.4
A05p19930 Brassica napus HOM05D003148 ORTHO05D003894 7.9e-42 173.7 97 80.4
C05p33280 Brassica napus HOM05D003148 ORTHO05D003894 7.9e-42 173.7 97 80.4
BolC5t32054H Brassica oleracea HOM05D003148 ORTHO05D003894 7.9e-42 173.7 97 80.4
BraA05t20898Z Brassica rapa HOM05D003148 ORTHO05D003894 7.9e-42 173.7 97 80.4
Carub.0001s3979 Capsella rubella HOM05D003148 ORTHO05D003894 7.9e-42 173.7 97 79.4
CARHR040890 Cardamine hirsuta HOM05D003148 ORTHO05D003894 7.9e-42 173.7 97 79.4
AL1G58530 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 1.0e-41 173.3 97 78.4
Migut.H01840 Erythranthe guttata HOM05D003148 ORTHO05D003894 1.0e-41 173.3 97 83.5
FAN16G3453 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.8e-41 172.6 97 81.4
FAN21G1173 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.8e-41 172.6 97 81.4
Sp1g37600 Schrenkiella parvula HOM05D003148 ORTHO05D003894 1.8e-41 172.6 97 79.4
Os08g0175300 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 2.3e-41 172.2 97 78.4
AT1G50840 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 3.0e-41 171.8 97 76.3
Duzib170G0998 Durio zibethinus HOM05D003148 ORTHO05D003894 3.0e-41 171.8 98 80.6
SEGI_28554 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 3.9e-41 171.4 97 80.4
Thhalv10011195m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 5.1e-41 171.0 97 78.4
BcaC05g27391 Brassica carinata HOM05D003148 ORTHO05D003894 1.1e-40 169.9 98 79.6
PSO541G1561 Papaver somniferum HOM05D003148 ORTHO05D003894 1.9e-40 169.1 97 80.4
PSO675G7850 Papaver somniferum HOM05D003148 ORTHO05D003894 2.5e-40 168.7 97 80.4
Ciclev10007282m.g Citrus clementina HOM05D003148 ORTHO05D003894 4.3e-40 167.9 97 83.5
AagrBONN_evm.TU.Sc2ySwM_228.5326 Anthoceros agrestis HOM05D003148 ORTHO05D003894 7.4e-40 167.2 97 79.4
Lj6A79G3 Lonicera japonica HOM05D003148 ORTHO05D003894 4.8e-39 164.5 102 69.6
HPP92_009350 Vanilla planifolia HOM05D003148 ORTHO05D003894 4.8e-39 164.5 97 77.3
SEGI_10889 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 1.8e-38 162.5 98 75.5
Mapoly0039s0093 Marchantia polymorpha HOM05D003148 ORTHO05D003894 3.1e-38 161.8 97 76.3
SHI31847 Sapria himalayana HOM05D003148 ORTHO05D003894 9.1e-38 160.2 124 62.1
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 3.4e-37 158.3 97 77.3
Pp3c14_14550 Physcomitrium patens HOM05D003148 ORTHO05D003894 1.0e-36 156.8 97 75.3
SMO356G0432 Selaginella moellendorffii HOM05D003148 ORTHO05D003894 5.0e-36 154.5 99 73.7
Lj6C83G1 Lonicera japonica HOM05D003148 ORTHO05D003894 2.5e-35 152.1 99 70.7
PSO017G6339 Papaver somniferum HOM05D003148 ORTHO05D003894 3.2e-35 151.8 97 72.2
Lju760A7T19 Lonicera japonica HOM05D003148 ORTHO05D003894 1.6e-34 149.4 97 70.1
Zm00001eb414740 Zea mays HOM05D003148 ORTHO05D003894 4.5e-29 131.3 97 66.0
arahy.Tifrunner.gnm1.ann1.CSHU8D Arachis hypogaea HOM05D003148 ORTHO05D003894 3.8e-28 128.3 89 69.7
MCO10G006 Micromonas commoda HOM05D003148 ORTHO05D003894 9.4e-27 123.6 94 66.0
Oeu062599.1 Olea europaea HOM05D003148 ORTHO05D003894 9.4e-27 123.6 90 61.1
PRCOL_00004766 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 1.6e-26 122.9 97 61.9
TPR.G16586 Trifolium pratense HOM05D003148 ORTHO05D003894 6.1e-26 120.9 66 80.3
Duzib170G0475 Durio zibethinus HOM05D003148 ORTHO05D003894 2.0e-24 115.9 68 75.0
unitig_52.g17354 Utricularia gibba HOM05D003148 ORTHO05D003894 5.7e-24 114.4 66 77.3
PRCOL_00004837 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 1.7e-20 102.8 77 62.3
LjContig00351g0021948 Lotus japonicus HOM05D003148 ORTHO05D003894 8.5e-20 100.5 51 86.3
Glyma.13G112951 Glycine max HOM05D003148 ORTHO05D003894 1.2e-18 96.7 51 82.4
Glyma.14G191601 Glycine max HOM05D003148 ORTHO05D003894 1.2e-18 96.7 51 82.4
Lsat_1_v5_gn_3_87421 Lactuca sativa HOM05D003148 ORTHO05D003894 4.0e-17 91.7 49 81.6
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 8.8e-17 90.5 98 49.0
Lsat_1_v5_gn_3_87460 Lactuca sativa HOM05D003148 ORTHO05D003894 4.8e-15 84.7 49 75.5
arahy.Tifrunner.gnm1.ann1.QLJ615 Arachis hypogaea HOM05D003148 ORTHO05D003894 1.8e-14 82.8 99 46.5
arahy.Tifrunner.gnm1.ann1.CVK6CU Arachis hypogaea HOM05D003148 ORTHO05D002594 3.1e-14 82.0 47 76.6
SEGI_08935 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 2.5e-11 72.4 41 82.9
Cre08.g363837 Chlamydomonas reinhardtii HOM05D003148 ORTHO05D003894 9.4e-11 70.5 51 64.7
CBR_g50948 Chara braunii HOM05D003148 ORTHO05D003894 2.3e-09 65.9 33 87.9
Nitab4.5_0000397g0350 Nicotiana tabacum HOM05D003148 ORTHO05D003894 8.8e-09 63.9 32 90.6
Nitab4.5_0000622g0240 Nicotiana tabacum HOM05D003148 ORTHO05D003894 8.8e-09 63.9 32 90.6
arahy.Tifrunner.gnm1.ann1.L8USRH Arachis hypogaea HOM05D003148 ORTHO05D003894 2.6e-08 62.4 47 63.8


User provided reference genes

Program Settings