Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019815 Carpinus fangiana HOM05D000688 ORTHO05D016546 3.8e-129 464.9 246 100.0
Haze_02986 Corylus avellana HOM05D000688 ORTHO05D003888 8.4e-12 75.1 40 95.0
Potri.015G003000 Populus trichocarpa HOM05D000688 ORTHO05D003888 8.4e-12 75.1 41 92.7
Sopen10g029500 Solanum pennellii HOM05D000688 ORTHO05D003888 8.4e-12 75.1 61 67.2
Solyc10g078880.2 Solanum lycopersicum HOM05D000688 ORTHO05D003888 1.4e-11 74.3 61 67.2
PGSC0003DMG400011445 Solanum tuberosum HOM05D000688 ORTHO05D003888 1.4e-11 74.3 61 67.2
Ciclev10000078m.g Citrus clementina HOM05D000688 ORTHO05D003888 1.9e-11 73.9 41 90.2
Lalb_Chr01g0000861 Lupinus albus HOM05D000688 ORTHO05D003888 1.9e-11 73.9 38 97.4
AUR62013825 Chenopodium quinoa HOM05D000688 ORTHO05D003888 2.4e-11 73.6 41 90.2
Cc04_g08890 Coffea canephora HOM05D000688 ORTHO05D003888 2.4e-11 73.6 40 92.5
Aqoxy3G02794 Aquilegia oxysepala HOM05D000688 ORTHO05D003888 3.2e-11 73.2 60 68.3
Aqoxy4G01311 Aquilegia oxysepala HOM05D000688 ORTHO05D003888 4.2e-11 72.8 60 68.3
Aqoxy6G00568 Aquilegia oxysepala HOM05D000688 ORTHO05D003888 4.2e-11 72.8 60 68.3
QL05p087351 Quercus lobata HOM05D000688 ORTHO05D003888 4.2e-11 72.8 41 87.8
PGSC0003DMG400011444 Solanum tuberosum HOM05D000688 ORTHO05D003888 4.2e-11 72.8 61 65.6
Atru.chr12.1245 Acer truncatum HOM05D000688 ORTHO05D003888 5.5e-11 72.4 41 87.8
CSS0019460 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D003888 5.5e-11 72.4 61 63.9
COL.COLO4_05983 Corchorus olitorius HOM05D000688 ORTHO05D003888 5.5e-11 72.4 40 90.0
Rhsim11G0122400 Rhododendron simsii HOM05D000688 ORTHO05D003888 5.5e-11 72.4 41 87.8
Eucgr.E00987 Eucalyptus grandis HOM05D000688 ORTHO05D016546 7.1e-11 72.0 41 85.4
Glyma.01G006500 Glycine max HOM05D000688 ORTHO05D003888 7.1e-11 72.0 38 92.1
Lj5g0025980 Lotus japonicus HOM05D000688 ORTHO05D003888 7.1e-11 72.0 40 90.0
Nitab4.5_0000105g0140 Nicotiana tabacum HOM05D000688 ORTHO05D003888 7.1e-11 72.0 45 84.4
Nitab4.5_0004643g0010 Nicotiana tabacum HOM05D000688 ORTHO05D003888 7.1e-11 72.0 45 84.4
Oeu006782.2 Olea europaea HOM05D000688 ORTHO05D003888 7.1e-11 72.0 62 61.3
Solyc10g078860.2 Solanum lycopersicum HOM05D000688 ORTHO05D003888 7.1e-11 72.0 40 90.0
Sopen10g029490 Solanum pennellii HOM05D000688 ORTHO05D003888 7.1e-11 72.0 40 90.0
Duzib106G0735 Durio zibethinus HOM05D000688 ORTHO05D003888 9.3e-11 71.6 38 92.1
Peaxi162Scf00003g04511 Petunia axillaris HOM05D000688 ORTHO05D003888 9.3e-11 71.6 40 87.5
Psat4g164800 Pisum sativum HOM05D000688 ORTHO05D003888 9.3e-11 71.6 38 89.5
DCAR_012513 Daucus carota HOM05D000688 ORTHO05D003888 1.2e-10 71.2 40 90.0
vmacro01621 Vaccinium macrocarpon HOM05D000688 ORTHO05D003888 1.2e-10 71.2 41 87.8
CiPaw.14G009900 Carya illinoinensis HOM05D000688 ORTHO05D003888 1.6e-10 70.9 40 87.5
AUR62036901 Chenopodium quinoa HOM05D000688 ORTHO05D003888 1.6e-10 70.9 39 89.7
Dinv01617 Davidia involucrata HOM05D000688 ORTHO05D003888 1.6e-10 70.9 41 90.2
Glyma.07G125300 Glycine max HOM05D000688 ORTHO05D003888 1.6e-10 70.9 38 92.1
Gohir.A05G399000 Gossypium hirsutum HOM05D000688 ORTHO05D003888 1.6e-10 70.9 40 87.5
Gohir.D04G016900 Gossypium hirsutum HOM05D000688 ORTHO05D003888 1.6e-10 70.9 40 87.5
Gorai.012G019600 Gossypium raimondii HOM05D000688 ORTHO05D003888 1.6e-10 70.9 40 87.5
Manes.04G155900 Manihot esculenta HOM05D000688 ORTHO05D003888 1.6e-10 70.9 45 80.0
Peaxi162Scf01517g00143 Petunia axillaris HOM05D000688 ORTHO05D003888 1.6e-10 70.9 40 87.5
PSO339G4862 Papaver somniferum HOM05D000688 ORTHO05D003888 2.1e-10 70.5 41 85.4
PSO384G1949 Papaver somniferum HOM05D000688 ORTHO05D003888 2.1e-10 70.5 41 85.4
Prupe.2G044100 Prunus persica HOM05D000688 ORTHO05D003888 2.1e-10 70.5 40 85.0
Sc14g0004780 Simmondsia chinensis HOM05D000688 ORTHO05D003888 2.1e-10 70.5 40 90.0
TAR371G0646 Trochodendron aralioides HOM05D000688 ORTHO05D003888 2.1e-10 70.5 72 52.8
TAR376G0407 Trochodendron aralioides HOM05D000688 ORTHO05D003888 2.1e-10 70.5 53 69.8
Ah.01g004280 Amaranthus hybridus HOM05D000688 ORTHO05D003888 2.7e-10 70.1 40 87.5
EL10Ac1g01996 Beta vulgaris HOM05D000688 ORTHO05D003888 2.7e-10 70.1 40 87.5
CANSAT21G2099 Cannabis sativa HOM05D000688 ORTHO05D003888 2.7e-10 70.1 47 76.6
Lsat_1_v5_gn_7_12221 Lactuca sativa HOM05D000688 ORTHO05D003888 2.7e-10 70.1 60 63.3
Lj3A924G39 Lonicera japonica HOM05D000688 ORTHO05D016546 2.7e-10 70.1 41 85.4
Lj3g0004991 Lotus japonicus HOM05D000688 ORTHO05D003888 2.7e-10 70.1 40 85.0
MBI01_g22371_MAGBIO Magnolia biondii HOM05D000688 ORTHO05D003888 2.7e-10 70.1 41 82.9
SGA_v2.0_scaffold375G50252 Striga asiatica HOM05D000688 ORTHO05D003888 2.7e-10 70.1 38 89.5
TWI63G1180 Tripterygium wilfordii HOM05D000688 ORTHO05D003888 2.7e-10 70.1 46 73.9
DCAR_022371 Daucus carota HOM05D000688 ORTHO05D003888 3.5e-10 69.7 66 59.1
ECA236G1694 Erigeron canadensis HOM05D000688 ORTHO05D003888 3.5e-10 69.7 41 85.4
Migut.B01181 Erythranthe guttata HOM05D000688 ORTHO05D003888 3.5e-10 69.7 38 86.8
FvH4_5g31720 Fragaria vesca HOM05D000688 ORTHO05D003888 3.5e-10 69.7 40 85.0
FAN18G2226 Fragaria x ananassa HOM05D000688 ORTHO05D003888 3.5e-10 69.7 40 85.0
Nn2g14058 Nelumbo nucifera HOM05D000688 ORTHO05D003888 3.5e-10 69.7 40 85.0
QL05p086844 Quercus lobata HOM05D000688 ORTHO05D003888 3.5e-10 69.7 37 91.9
SalBow4G1891 Salvia bowleyana HOM05D000688 ORTHO05D003888 3.5e-10 69.7 41 82.9
SalBow5G4138 Salvia bowleyana HOM05D000688 ORTHO05D003888 3.5e-10 69.7 38 86.8
HanXRQChr04g0119821 Helianthus annuus HOM05D000688 ORTHO05D003888 4.6e-10 69.3 97 44.3
PGR031G2689 Punica granatum HOM05D000688 ORTHO05D003888 4.6e-10 69.3 60 63.3
Thecc.10G140700 Theobroma cacao HOM05D000688 ORTHO05D003888 4.6e-10 69.3 40 85.0
GSVIVG01036596001 Vitis vinifera HOM05D000688 ORTHO05D003888 4.6e-10 69.3 67 58.2
MSTRG.20498 Avicennia marina HOM05D000688 ORTHO05D003888 6.0e-10 68.9 38 86.8
CAN.G960.4 Capsicum annuum HOM05D000688 ORTHO05D003888 6.0e-10 68.9 40 87.5
Ca_23464_v3 Cicer arietinum L. HOM05D000688 ORTHO05D003888 6.0e-10 68.9 38 84.2
FvH4_7g03930 Fragaria vesca HOM05D000688 ORTHO05D003888 6.0e-10 68.9 40 85.0
FAN01G1250 Fragaria x ananassa HOM05D000688 ORTHO05D003888 6.0e-10 68.9 40 85.0
FAN03G3082 Fragaria x ananassa HOM05D000688 ORTHO05D003888 6.0e-10 68.9 40 85.0
FAN06G4099 Fragaria x ananassa HOM05D000688 ORTHO05D003888 6.0e-10 68.9 40 85.0
RcHm_v2.0_Chr1g0327591 Rosa chinensis HOM05D000688 ORTHO05D003888 6.0e-10 68.9 40 85.0
RcHm_v2.0_Chr7g0227611 Rosa chinensis HOM05D000688 ORTHO05D003888 6.0e-10 68.9 40 85.0
Atru.chr4.3095 Acer truncatum HOM05D000688 ORTHO05D003888 7.9e-10 68.6 40 82.5
MELO3C024455.2 Cucumis melo HOM05D000688 ORTHO05D003888 7.9e-10 68.6 45 80.0
CsaV3_7G035430 Cucumis sativus L. HOM05D000688 ORTHO05D003888 7.9e-10 68.6 45 80.0
Hma1.2p1_1342F.1_g276980 Hydrangea macrophylla HOM05D000688 ORTHO05D016546 7.9e-10 68.6 38 92.1
Eucgr.A00794 Eucalyptus grandis HOM05D000688 ORTHO05D003888 1.0e-09 68.2 41 82.9
FAN08G2264 Fragaria x ananassa HOM05D000688 ORTHO05D003888 1.0e-09 68.2 40 82.5
Medtr8g023445 Medicago truncatula HOM05D000688 ORTHO05D003888 1.0e-09 68.2 38 84.2
Medtr1g022135 Medicago truncatula HOM05D000688 ORTHO05D003888 1.3e-09 67.8 38 84.2
Sabra15G0001900 Salix brachista HOM05D000688 ORTHO05D003888 1.3e-09 67.8 37 91.9
Sed0017010 Sechium edule HOM05D000688 ORTHO05D003888 1.8e-09 67.4 40 85.0
TPR.G26445 Trifolium pratense HOM05D000688 ORTHO05D003888 1.8e-09 67.4 38 81.6
PSO478G2833 Papaver somniferum HOM05D000688 ORTHO05D003888 2.3e-09 67.0 41 78.0
Gorai.007G005100 Gossypium raimondii HOM05D000688 ORTHO05D016546 3.0e-09 66.6 58 63.8
HanXRQChr06g0183351 Helianthus annuus HOM05D000688 ORTHO05D003888 3.0e-09 66.6 48 68.8
Zm00001eb269100 Zea mays HOM05D000688 ORTHO05D003888 3.0e-09 66.6 41 80.5
AL8G14060 Arabidopsis lyrata HOM05D000688 ORTHO05D003888 3.9e-09 66.2 41 75.6
AT5G45140 Arabidopsis thaliana HOM05D000688 ORTHO05D003888 3.9e-09 66.2 41 75.6
Carub.0008s0305 Capsella rubella HOM05D000688 ORTHO05D003888 3.9e-09 66.2 41 75.6
CARHR110550 Cardamine hirsuta HOM05D000688 ORTHO05D003888 3.9e-09 66.2 41 75.6
CARHR177390 Cardamine hirsuta HOM05D000688 ORTHO05D003888 3.9e-09 66.2 41 75.6
Migut.B01180 Erythranthe guttata HOM05D000688 ORTHO05D003888 3.9e-09 66.2 38 84.2
Thhalv10000748m.g Eutrema salsugineum HOM05D000688 ORTHO05D003888 3.9e-09 66.2 41 75.6
Nitab4.5_0000196g0090 Nicotiana tabacum HOM05D000688 ORTHO05D016546 3.9e-09 66.2 45 75.6
Phvul.004G175000 Phaseolus vulgaris HOM05D000688 ORTHO05D003888 3.9e-09 66.2 38 84.2
THA.LOC104811399 Tarenaya hassleriana HOM05D000688 ORTHO05D003888 3.9e-09 66.2 41 75.6
TPR.G29748 Trifolium pratense HOM05D000688 ORTHO05D003888 3.9e-09 66.2 38 81.6
Gohir.A11G004801 Gossypium hirsutum HOM05D000688 ORTHO05D003888 5.1e-09 65.9 40 82.5
Gorai.007G005200 Gossypium raimondii HOM05D000688 ORTHO05D003888 6.7e-09 65.5 40 82.5
Cpa.g.sc17.36 Carica papaya HOM05D000688 ORTHO05D016546 8.7e-09 65.1 38 81.6
BcaB07g30474 Brassica carinata HOM05D000688 ORTHO05D003888 1.1e-08 64.7 38 76.3
BcaC03g16725 Brassica carinata HOM05D000688 ORTHO05D003888 1.1e-08 64.7 38 76.3
BcaC06g34487 Brassica carinata HOM05D000688 ORTHO05D003888 1.1e-08 64.7 38 76.3
Os03g0403100 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D003888 1.1e-08 64.7 40 80.0
AagrBONN_evm.TU.Sc2ySwM_344.1343 Anthoceros agrestis HOM05D000688 ORTHO05D003888 1.5e-08 64.3 41 75.6
FAN13G2193 Fragaria x ananassa HOM05D000688 ORTHO05D003888 1.5e-08 64.3 40 80.0
MD14G1029000 Malus domestica HOM05D000688 ORTHO05D003888 1.5e-08 64.3 40 75.0
Pp3c18_11070 Physcomitrium patens HOM05D000688 ORTHO05D003888 2.5e-08 63.5 48 64.6
VMungo0464G0248 Vigna mungo HOM05D000688 ORTHO05D003888 2.5e-08 63.5 38 81.6
unitig_22.g5333 Utricularia gibba HOM05D000688 ORTHO05D003888 3.3e-08 63.2 38 73.7
SGA_v2.0_scaffold195G40824 Striga asiatica HOM05D000688 ORTHO05D003888 4.3e-08 62.8 38 81.6
A02p28860 Brassica napus HOM05D000688 ORTHO05D003888 5.6e-08 62.4 37 75.7
A06p46750 Brassica napus HOM05D000688 ORTHO05D003888 5.6e-08 62.4 37 75.7
C02p45870 Brassica napus HOM05D000688 ORTHO05D003888 5.6e-08 62.4 37 75.7
C07p27930 Brassica napus HOM05D000688 ORTHO05D003888 5.6e-08 62.4 37 75.7
BolC2t10650H Brassica oleracea HOM05D000688 ORTHO05D003888 5.6e-08 62.4 37 75.7
BraA06t27547Z Brassica rapa HOM05D000688 ORTHO05D003888 5.6e-08 62.4 37 75.7
SMO171G0074 Selaginella moellendorffii HOM05D000688 ORTHO05D003888 5.6e-08 62.4 88 40.9
CAN.G960.6 Capsicum annuum HOM05D000688 ORTHO05D003888 7.4e-08 62.0 62 61.3
CAN.G960.25 Capsicum annuum HOM05D000688 ORTHO05D003888 1.3e-07 61.2 40 80.0
SEGI_07418 Sequoiadendron giganteum HOM05D000688 ORTHO05D016546 2.8e-07 60.1 64 50.0
Mapoly0097s0027 Marchantia polymorpha HOM05D000688 ORTHO05D003888 6.2e-07 58.9 41 61.0
HPP92_018385 Vanilla planifolia HOM05D000688 ORTHO05D003888 8.1e-07 58.5 38 63.2
CAN.G960.34 Capsicum annuum HOM05D000688 ORTHO05D003888 1.1e-06 58.2 34 82.4
Aa31LG9G7980 Aethionema arabicum HOM05D000688 ORTHO05D003888 1.4e-06 57.8 45 60.0


User provided reference genes

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