Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 1.2e-267 926.0 509 100.0
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 5.8e-257 890.6 530 93.8
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 9.3e-199 697.2 517 76.6
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 1.4e-194 683.3 518 75.3
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 4.1e-186 655.2 518 70.5
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 1.8e-181 639.8 523 70.2
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 2.6e-180 636.0 515 70.7
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 3.3e-180 635.6 510 70.2
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 1.3e-179 633.6 517 70.4
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 5.3e-178 628.2 519 67.4
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 7.0e-178 627.9 512 69.5
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 2.6e-177 625.9 511 68.9
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 2.7e-174 615.9 515 69.1
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 4.7e-174 615.1 598 58.5
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 1.7e-171 606.7 513 69.2
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 2.8e-171 605.9 517 69.1
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 4.8e-171 605.1 514 67.7
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 8.2e-171 604.4 510 66.7
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 1.8e-170 603.2 510 67.8
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 3.1e-170 602.4 513 66.1
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 1.6e-169 600.1 513 66.7
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.9e-167 593.2 508 67.9
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 7.2e-167 591.3 485 68.7
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 7.2e-167 591.3 508 66.5
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 2.1e-166 589.7 521 65.5
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 3.6e-166 589.0 462 70.8
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 4.7e-166 588.6 511 65.4
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 1.8e-165 586.6 499 69.1
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 3.0e-165 585.9 507 66.9
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 4.0e-165 585.5 513 68.6
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 4.4e-164 582.0 467 69.8
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 1.8e-162 576.6 522 64.6
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 2.4e-162 576.2 514 62.3
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 1.2e-161 573.9 512 64.3
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 1.7e-160 570.1 501 65.9
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 2.9e-160 569.3 521 59.7
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 6.6e-160 568.2 445 71.0
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 1.5e-159 567.0 517 63.1
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 2.5e-159 566.2 514 64.0
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 1.2e-158 563.9 512 64.6
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 4.7e-158 562.0 399 75.9
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 1.8e-157 560.1 512 62.9
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 1.2e-156 557.4 518 64.3
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 2.0e-156 556.6 516 61.8
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 2.6e-156 556.2 501 65.1
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 3.4e-156 555.8 517 60.2
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 4.4e-156 555.4 512 62.3
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 9.8e-156 554.3 508 63.4
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.7e-155 553.5 543 60.0
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 1.7e-155 553.5 499 64.9
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 2.8e-155 552.7 440 70.7
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 1.6e-153 547.0 440 68.4
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 1.0e-152 544.3 442 69.0
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 2.9e-152 542.7 500 64.2
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 3.8e-152 542.3 517 64.6
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 1.5e-151 540.4 447 67.3
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 2.5e-151 539.7 516 62.2
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 1.2e-150 537.3 509 62.7
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 6.1e-150 535.0 503 61.4
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 8.0e-150 534.6 399 72.9
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 2.3e-149 533.1 447 67.3
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 2.3e-149 533.1 399 73.9
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 4.0e-149 532.3 435 70.8
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 1.2e-148 530.8 503 61.6
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 2.6e-148 529.6 521 59.5
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 9.8e-148 527.7 520 60.2
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 1.3e-147 527.3 381 75.6
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 1.7e-147 526.9 525 61.5
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 2.2e-147 526.6 435 69.0
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 2.9e-147 526.2 503 61.2
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 1.1e-146 524.2 496 63.3
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 3.2e-146 522.7 517 61.3
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 4.1e-146 522.3 485 64.3
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 5.4e-146 521.9 440 68.4
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 6.0e-145 518.5 556 57.6
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 7.8e-145 518.1 517 58.0
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 2.3e-144 516.5 398 71.6
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 5.0e-144 515.4 517 61.7
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 6.6e-144 515.0 511 60.5
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 6.6e-144 515.0 517 61.5
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 1.3e-139 500.7 397 68.0
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 1.1e-138 497.7 514 53.7
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 4.1e-138 495.7 496 59.1
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 1.6e-137 493.8 460 64.6
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 6.0e-137 491.9 515 57.9
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 5.6e-135 485.3 520 57.9
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 2.1e-134 483.4 520 59.6
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 6.2e-134 481.9 479 60.3
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 6.4e-131 471.9 487 59.5
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 1.1e-130 471.1 509 58.3
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 1.1e-130 471.1 518 58.9
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 2.4e-130 469.9 498 53.6
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 9.2e-130 468.0 507 58.0
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 1.2e-129 467.6 512 53.1
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 2.1e-129 466.8 420 59.8
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 1.0e-128 464.5 518 58.7
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 1.0e-128 464.5 512 57.8
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 1.3e-128 464.2 512 57.0
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 1.3e-128 464.2 482 55.6
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 6.6e-128 461.8 373 69.2
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 1.9e-127 460.3 512 57.8
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 6.2e-126 455.3 514 57.8
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 6.2e-126 455.3 513 57.7
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 1.8e-125 453.8 479 57.4
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 3.1e-125 453.0 479 58.9
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 3.1e-125 453.0 512 57.8
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 2.0e-124 450.3 479 57.8
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 1.5e-119 434.1 438 61.4
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 6.9e-117 425.2 396 61.9
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 1.5e-116 424.1 494 53.8
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 9.9e-116 421.4 407 57.5
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 3.0e-112 409.8 506 49.0
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 7.6e-108 395.2 457 55.4
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 8.7e-104 381.7 534 48.1
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 1.3e-102 377.9 500 48.4
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 1.2e-97 361.3 356 64.0
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 4.0e-93 346.3 261 64.8
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 1.4e-85 321.2 553 43.0
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 3.8e-83 313.2 414 49.3
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 2.2e-75 287.3 272 61.8
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 2.0e-71 274.2 187 71.7
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 9.4e-66 255.4 475 35.8
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 5.0e-59 233.0 491 38.9
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 8.5e-51 205.7 279 43.4
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 1.6e-49 201.4 215 47.9
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 9.8e-47 192.2 530 30.6
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 2.9e-43 180.6 255 43.1
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 1.2e-23 115.5 605 23.0
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 3.7e-22 110.5 133 45.9
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 3.3e-18 97.4 85 56.5
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 7.3e-18 96.3 86 55.8
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 4.7e-17 93.6 129 45.0
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 8.9e-16 89.4 167 37.1
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 1.9e-13 81.6 163 35.6
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 6.6e-11 73.2 133 34.6
Nitab4.5_0002059g0020 Nicotiana tabacum HOM05D000453 ORTHO05D000387 4.4e-07 60.5 118 32.2
unitig_8.g3367 Utricularia gibba HOM05D002634 ORTHO05D003100 9.9e-07 59.3 90 37.8
Rhsim12G0161600 Rhododendron simsii HOM05D000453 ORTHO05D000387 2.2e-06 58.2 117 34.2
Cre06.g255400 Chlamydomonas reinhardtii HOM05D005323 ORTHO05D006820 6.4e-06 56.6 117 29.9
SGA_v2.0_scaffold62G21510 Striga asiatica HOM05D002332 ORTHO05D002509 8.4e-06 56.2 117 35.9


User provided reference genes

Program Settings