Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 0.0e+00 1184.5 638 100.0
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 4.7e-272 941.0 567 92.2
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 9.9e-214 747.3 783 56.7
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 2.0e-206 723.0 629 65.5
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 4.2e-204 715.3 651 63.6
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 4.0e-138 496.1 609 50.7
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 1.0e-133 481.5 626 47.1
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 2.0e-126 457.2 766 40.7
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 8.6e-125 451.8 658 47.6
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 1.9e-124 450.7 645 44.5
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 4.3e-124 449.5 630 44.1
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 9.5e-124 448.4 645 44.3
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 2.3e-122 443.7 637 45.1
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 7.5e-121 438.7 677 42.1
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 2.4e-119 433.7 717 42.1
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 4.6e-118 429.5 730 41.4
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 3.3e-116 423.3 648 44.8
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 2.1e-115 420.6 813 39.6
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 6.4e-112 409.1 665 44.1
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 7.8e-110 402.1 676 43.8
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 1.5e-108 397.9 719 40.1
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 1.9e-108 397.5 719 40.1
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 3.6e-107 393.3 792 37.5
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 3.1e-106 390.2 717 39.5
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 1.5e-105 387.9 641 42.3
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 2.6e-105 387.1 662 41.8
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 4.4e-105 386.3 693 43.6
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 5.8e-105 386.0 633 42.7
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 3.7e-104 383.3 421 50.4
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 1.4e-103 381.3 732 39.1
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 1.4e-103 381.3 695 39.6
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 1.7e-101 374.4 742 38.5
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 3.0e-101 373.6 649 42.1
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 1.5e-100 371.3 658 41.8
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 1.9e-100 370.9 699 41.5
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 5.2e-98 362.8 652 40.3
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 8.9e-98 362.1 710 36.6
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 2.0e-97 360.9 726 38.7
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 2.6e-97 360.5 708 38.4
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 4.9e-96 356.3 691 39.1
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 1.1e-95 355.1 655 37.9
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 1.2e-94 351.7 686 41.5
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 4.6e-94 349.7 683 38.8
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 5.1e-93 346.3 722 37.8
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 4.3e-92 343.2 686 37.2
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 8.1e-91 339.0 682 38.4
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 1.4e-90 338.2 696 36.8
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 7.6e-89 332.4 677 40.0
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 1.9e-87 327.8 684 36.7
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 3.2e-87 327.0 633 38.2
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 5.4e-87 326.2 731 35.4
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 1.2e-86 325.1 641 38.8
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 6.0e-86 322.8 670 38.1
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 3.0e-85 320.5 690 35.7
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 8.7e-85 318.9 723 35.0
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.1e-84 318.5 698 36.0
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 1.5e-84 318.2 450 44.4
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 1.9e-84 317.8 731 35.0
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 9.6e-84 315.5 811 32.9
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 6.2e-83 312.8 719 35.9
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 1.1e-82 312.0 701 35.9
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 9.0e-82 308.9 751 35.3
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 1.5e-81 308.1 791 35.3
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 1.3e-80 305.1 630 36.7
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 4.9e-80 303.1 721 33.3
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 1.9e-79 301.2 690 35.4
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 4.2e-79 300.1 788 33.1
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 4.2e-79 300.1 718 34.8
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 5.4e-79 299.7 713 34.6
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 2.3e-77 294.3 737 33.8
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 6.7e-77 292.7 792 34.5
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 1.9e-76 291.2 734 34.6
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 3.3e-76 290.4 601 37.1
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 5.6e-76 289.7 811 31.7
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 1.3e-75 288.5 690 36.7
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 2.1e-75 287.7 344 48.5
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 6.9e-74 282.7 758 33.6
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 6.9e-74 282.7 630 39.4
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.6e-73 280.8 534 39.5
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 4.5e-73 280.0 758 33.6
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 8.4e-72 275.8 772 32.6
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 1.0e-69 268.9 749 31.6
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 3.0e-69 267.3 416 43.0
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 3.0e-69 267.3 416 42.8
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 5.1e-69 266.5 747 33.2
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 6.7e-69 266.2 779 32.0
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 5.6e-68 263.1 433 41.8
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 7.4e-68 262.7 652 32.7
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 4.8e-67 260.0 818 31.2
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 5.3e-66 256.5 629 34.5
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 6.7e-61 239.6 458 35.2
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 6.7e-61 239.6 644 32.3
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 1.9e-60 238.0 270 48.1
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 1.9e-60 238.0 651 31.5
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 4.1e-58 230.3 436 38.3
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 2.0e-57 228.0 651 30.7
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 3.3e-52 210.7 186 58.1
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 5.0e-48 196.8 225 48.4
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 1.2e-46 192.2 649 33.6
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 1.3e-43 182.2 312 40.7
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 6.3e-43 179.9 219 46.1
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 1.5e-39 168.7 325 36.3
FvH4_4g00130 Fragaria vesca HOM05D006136 ORTHO05D007244 2.2e-35 154.8 499 32.1
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 5.5e-31 140.2 487 31.8
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 9.4e-31 139.4 141 56.0
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 9.4e-31 139.4 206 42.7
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 4.0e-29 134.0 93 68.8
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 3.4e-28 131.0 93 65.6
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 4.4e-28 130.6 682 25.8
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 7.7e-25 119.8 246 36.2
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 5.5e-23 113.6 285 33.3
Hund03317 Selenicereus undatus HOM05D006136 ORTHO05D007244 1.6e-22 112.1 500 28.4
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 1.8e-21 108.6 108 55.6
Solyc07g042700.4 Solanum lycopersicum HOM05D006136 ORTHO05D007244 3.7e-19 100.9 160 46.2
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 6.3e-19 100.1 76 60.5
Nitab4.5_0002310g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.7e-16 92.0 175 41.7
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 3.0e-13 81.3 57 68.4
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 2.0e-12 78.6 78 56.4
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 2.6e-12 78.2 149 38.9
Lsat_1_v5_gn_5_81880 Lactuca sativa HOM05D006136 ORTHO05D007244 3.2e-10 71.2 177 30.5
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 1.0e-08 66.2 136 34.6
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 2.9e-08 64.7 73 46.6
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 2.9e-08 64.7 73 46.6
VMungo1309G2339 Vigna mungo HOM05D006136 ORTHO05D007244 2.5e-07 61.6 161 36.0
MBI16_g40728_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 4.3e-07 60.8 41 61.0
TPR.G24042 Trifolium pratense HOM05D006136 ORTHO05D007244 7.3e-07 60.1 62 51.6


User provided reference genes

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