Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 6.9e-221 770.4 405 100.0
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 2.0e-196 689.1 405 91.4
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 2.9e-142 509.2 405 67.7
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 4.4e-135 485.3 406 68.7
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 1.4e-101 374.0 407 56.3
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 1.2e-100 370.9 418 52.6
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 8.8e-99 364.8 410 52.7
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 1.5e-98 364.0 408 53.2
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 7.4e-98 361.7 401 52.4
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 8.2e-97 358.2 409 50.9
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 2.6e-95 353.2 401 52.4
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 1.4e-93 347.4 411 53.3
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 2.7e-92 343.2 407 51.4
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 3.6e-92 342.8 411 53.0
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 1.8e-91 340.5 401 50.6
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 1.1e-90 337.8 401 50.9
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 5.7e-90 335.5 416 52.6
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 9.7e-90 334.7 404 52.5
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 9.7e-90 334.7 473 47.8
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 3.1e-88 329.7 398 53.3
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 7.0e-88 328.6 411 52.8
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 9.1e-88 328.2 454 48.9
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 1.7e-86 323.9 419 50.4
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 2.9e-86 323.2 404 52.7
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 4.2e-85 319.3 415 47.0
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 1.7e-81 307.4 403 48.6
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 2.8e-81 306.6 411 51.3
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 4.8e-81 305.8 408 49.0
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 2.4e-80 303.5 443 47.2
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 4.1e-80 302.8 423 49.2
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 8.5e-78 295.0 414 48.8
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 3.2e-77 293.1 405 48.9
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 5.5e-77 292.4 405 47.2
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 1.6e-76 290.8 407 49.9
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 8.8e-75 285.0 432 48.4
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 3.3e-74 283.1 402 46.8
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 3.7e-73 279.6 422 45.5
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 6.3e-73 278.9 429 47.3
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.5e-71 272.7 315 49.2
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 1.3e-70 271.2 421 45.8
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 1.3e-70 271.2 450 42.7
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 1.7e-70 270.8 410 45.6
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 2.2e-70 270.4 409 46.9
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 8.5e-70 268.5 410 45.9
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 9.4e-69 265.0 406 43.8
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 9.4e-69 265.0 446 42.8
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 3.6e-68 263.1 406 46.8
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 1.4e-67 261.2 444 42.3
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 2.3e-67 260.4 414 44.9
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 4.0e-67 259.6 297 52.2
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 4.0e-67 259.6 403 44.4
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 8.8e-67 258.5 287 52.3
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 2.0e-66 257.3 514 38.5
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 3.4e-66 256.5 441 42.0
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 9.8e-66 255.0 408 47.1
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 4.8e-65 252.7 406 43.1
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 3.1e-64 250.0 424 39.9
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 3.1e-64 250.0 424 42.9
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 1.6e-63 247.7 429 43.6
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 2.0e-63 247.3 406 42.6
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.5e-61 241.1 312 48.4
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 1.9e-61 240.7 397 44.3
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 3.3e-61 240.0 422 44.5
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 5.5e-61 239.2 412 40.8
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 1.6e-60 237.7 460 40.7
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 3.6e-60 236.5 474 37.3
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 1.0e-59 235.0 451 39.9
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 6.8e-59 232.3 476 38.9
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 2.6e-58 230.3 429 39.4
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 4.4e-58 229.6 411 44.0
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 7.5e-58 228.8 407 42.3
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 4.9e-57 226.1 438 37.4
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 1.8e-56 224.2 556 32.9
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 2.0e-55 220.7 438 39.3
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 2.7e-55 220.3 463 38.7
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 1.0e-54 218.4 442 38.9
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 5.0e-54 216.1 460 38.3
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 1.1e-53 214.9 282 51.1
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 1.5e-53 214.5 439 39.2
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 2.8e-52 210.3 348 40.5
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 2.8e-52 210.3 435 36.8
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 2.8e-52 210.3 410 40.5
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 3.6e-52 209.9 258 51.9
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 2.2e-49 200.7 437 37.3
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 8.3e-49 198.7 444 38.1
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 1.1e-48 198.4 415 38.6
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 5.4e-48 196.1 454 37.4
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 9.2e-48 195.3 307 40.4
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 2.3e-46 190.7 365 39.5
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 6.4e-41 172.6 223 50.2
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 7.8e-39 165.6 418 35.6
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 1.9e-37 161.0 392 36.7
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 9.5e-37 158.7 254 40.9
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 1.2e-34 151.8 439 30.8
Gohir.A05G407400 Gossypium hirsutum HOM05D007201 ORTHO05D009122 1.3e-33 148.3 243 43.2
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 8.3e-33 145.6 318 34.3
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 3.6e-28 130.2 90 66.7
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 1.9e-24 117.9 448 28.8
AagrBONN_evm.TU.Sc2ySwM_117.2509 Anthoceros agrestis HOM05D007201 ORTHO05D009122 3.3e-21 107.1 203 36.5
CBR_g15955 Chara braunii HOM05D007201 ORTHO05D009122 4.3e-13 80.1 274 32.5
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.8e-11 74.7 58 56.9
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.8e-11 74.7 58 56.9
Ah.11g043520 Amaranthus hybridus HOM05D000145 ORTHO05D000115 3.1e-11 73.9 310 28.7
arahy.Tifrunner.gnm1.ann1.IV261E Arachis hypogaea HOM05D000013 ORTHO05D000506 1.2e-10 72.0 98 44.9
FAN17G2523 Fragaria x ananassa HOM05D007201 ORTHO05D009122 4.6e-07 60.1 90 41.1
Sed0005629 Sechium edule HOM05D007201 ORTHO05D009122 7.9e-07 59.3 104 41.3
CSS0038290 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.0e-06 58.9 95 49.5
CSS0018491 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 5.1e-06 56.6 90 52.2
CSS0012149 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 6.7e-06 56.2 87 40.2
CSS0032596 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 6.7e-06 56.2 87 40.2


User provided reference genes

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