Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 0.0e+00 1182.2 602 100.0
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 0.0e+00 1130.5 605 96.2
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 4.0e-233 811.6 637 70.3
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 4.5e-224 781.6 622 68.3
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 8.4e-223 777.3 634 67.4
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 9.3e-222 773.9 637 67.3
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 3.9e-220 768.5 633 67.0
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 5.6e-219 764.6 633 67.0
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 9.6e-219 763.8 633 67.0
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 1.1e-217 760.4 532 76.9
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 9.0e-217 757.3 623 65.7
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 1.2e-216 756.9 623 65.7
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 1.7e-215 753.1 621 64.6
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 8.7e-212 740.7 637 64.1
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 5.7e-211 738.0 630 63.0
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 3.7e-210 735.3 627 62.7
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 4.1e-209 731.9 624 64.1
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 9.0e-209 730.7 640 63.3
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 9.0e-209 730.7 619 64.1
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 2.6e-208 729.2 629 64.5
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 5.8e-208 728.0 638 62.2
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 2.9e-207 725.7 641 64.4
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 2.9e-207 725.7 626 63.3
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 6.5e-207 724.5 622 63.0
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 1.2e-205 720.3 640 63.8
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 2.7e-205 719.2 622 63.2
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 6.1e-205 718.0 625 62.9
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 4.3e-203 711.8 607 64.1
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.6e-202 709.9 633 62.1
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 2.8e-202 709.1 635 61.7
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 2.0e-200 703.0 617 61.8
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.5e-198 696.0 621 62.0
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.2e-198 695.7 621 62.0
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 3.2e-198 695.7 627 61.9
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 5.5e-198 694.9 598 62.2
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 1.2e-197 693.7 621 62.0
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-197 693.7 621 61.2
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.1e-197 693.0 621 61.5
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 2.1e-197 693.0 626 62.1
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 1.4e-196 690.3 607 60.5
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 1.8e-196 689.9 643 59.3
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 3.9e-196 688.7 642 59.0
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 1.5e-195 686.8 615 61.6
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 3.3e-195 685.6 640 60.5
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 9.7e-195 684.1 609 61.9
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 3.7e-194 682.2 614 62.5
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 4.8e-194 681.8 626 61.2
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 6.3e-194 681.4 632 60.6
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 1.8e-193 679.9 623 59.2
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 3.1e-193 679.1 603 61.2
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 3.1e-193 679.1 600 61.2
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 6.9e-193 677.9 633 60.0
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 2.0e-192 676.4 629 59.8
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 3.4e-192 675.6 645 58.6
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 5.9e-192 674.9 629 58.5
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.3e-191 673.7 633 58.5
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 3.8e-191 672.2 609 61.2
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 5.0e-191 671.8 630 61.4
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 6.5e-191 671.4 626 61.0
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 2.5e-190 669.5 603 59.5
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 9.4e-190 667.5 630 59.7
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 1.2e-189 667.2 624 59.5
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 2.1e-189 666.4 617 61.8
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 2.7e-189 666.0 600 60.3
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 2.7e-189 666.0 600 60.5
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 4.7e-189 665.2 635 58.1
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 4.7e-189 665.2 610 60.3
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 7.9e-189 664.5 619 58.3
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 1.8e-188 663.3 635 57.3
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 2.3e-188 662.9 635 60.9
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 3.0e-188 662.5 635 60.9
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 3.9e-188 662.1 597 60.3
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 6.7e-188 661.4 620 59.4
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.1e-187 660.6 616 58.0
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 2.0e-187 659.8 641 58.2
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 2.6e-187 659.4 621 57.8
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 4.4e-187 658.7 606 60.9
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 4.4e-187 658.7 598 60.0
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 4.4e-187 658.7 598 60.0
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 1.1e-185 654.1 612 58.5
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 2.4e-185 652.9 619 57.8
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 2.4e-185 652.9 626 59.1
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 4.1e-185 652.1 609 58.8
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 2.6e-184 649.4 596 61.1
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 3.5e-184 649.0 606 60.4
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 4.5e-184 648.7 613 59.5
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 7.7e-184 647.9 631 58.2
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 2.9e-183 646.0 638 57.8
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 6.5e-183 644.8 605 61.0
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 1.1e-182 644.0 596 58.2
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 4.2e-182 642.1 618 59.4
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 3.6e-181 639.0 627 58.2
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 1.4e-180 637.1 602 58.3
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 3.0e-180 636.0 602 58.3
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 3.0e-180 636.0 602 58.3
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 2.2e-178 629.8 605 58.2
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 2.2e-178 629.8 602 58.0
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 2.2e-178 629.8 610 57.0
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 8.2e-178 627.9 602 57.8
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 9.1e-177 624.4 604 57.6
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.0e-172 610.9 553 60.9
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 1.8e-172 610.1 511 65.4
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 8.8e-172 607.8 625 56.0
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 7.2e-166 588.2 597 55.4
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 5.7e-163 578.6 594 54.7
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 1.1e-158 564.3 633 52.1
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 7.8e-152 541.6 557 55.3
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 1.4e-148 530.8 599 51.6
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 6.8e-148 528.5 582 52.1
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 9.8e-147 524.6 621 51.4
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.4e-145 520.8 601 49.9
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 6.6e-143 511.9 618 50.2
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 3.6e-141 506.1 658 45.7
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 3.6e-141 506.1 577 49.9
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 4.0e-140 502.7 507 55.8
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 3.8e-130 469.5 643 48.7
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 8.6e-127 458.4 488 54.3
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 6.4e-122 442.2 504 50.6
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 1.7e-119 434.1 501 48.9
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 1.2e-112 411.4 520 48.7
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 1.3e-109 401.4 401 58.4
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 1.8e-108 397.5 653 42.3
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 4.0e-108 396.4 421 56.3
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 7.1e-105 385.6 406 55.2
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 1.1e-100 371.7 645 37.7
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 4.8e-93 346.3 336 59.5
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 2.1e-88 330.9 597 38.4
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 9.7e-86 322.0 276 60.9
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.2e-82 310.8 379 50.4
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.2e-82 310.8 379 50.4
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 5.5e-81 306.2 425 45.2
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 3.3e-78 297.0 248 64.1
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 5.2e-71 273.1 563 37.3
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 1.1e-70 271.9 240 62.1
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 1.5e-65 255.0 359 46.0
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 2.1e-64 251.1 359 45.4
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 5.2e-63 246.5 358 45.0
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 5.7e-62 243.0 146 74.0
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 5.3e-60 236.5 769 29.0
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 7.0e-60 236.1 198 60.1
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 1.6e-56 224.9 385 42.9
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 3.5e-43 180.6 567 28.7
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 1.5e-41 175.3 157 59.9
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 3.6e-40 170.6 560 27.3
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 4.4e-38 163.7 591 29.9
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 3.7e-37 160.6 245 47.3
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 2.5e-33 147.9 179 44.1
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 4.9e-21 107.1 60 80.0
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 4.1e-20 104.0 83 63.9
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 1.4e-15 89.0 80 62.5
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 2.4e-15 88.2 284 32.0
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 9.2e-12 76.3 91 57.1
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 3.6e-08 64.3 51 64.7
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 1.4e-07 62.4 83 49.4
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 5.8e-06 57.0 37 67.6


User provided reference genes

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