Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012029 Carpinus fangiana HOM05D007086 ORTHO05D008927 1.1e-43 179.5 89 100.0
Actinidia05249 Actinidia chinensis HOM05D001611 ORTHO05D001464 3.6e-29 131.3 80 81.2
CiPaw.11G146300 Carya illinoinensis HOM05D007086 ORTHO05D008927 1.0e-28 129.8 72 88.9
GSVIVG01019940001 Vitis vinifera HOM05D007086 ORTHO05D008927 1.8e-28 129.0 71 88.7
Sed0003691 Sechium edule HOM05D007086 ORTHO05D008927 3.0e-28 128.3 71 85.9
CSS0011774 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 6.7e-28 127.1 71 87.3
CSS0048716 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 6.7e-28 127.1 71 87.3
CANSAT21G1174 Cannabis sativa HOM05D007086 ORTHO05D008927 2.0e-27 125.6 69 87.0
Cpa.g.sc29.74 Carica papaya HOM05D007086 ORTHO05D008927 2.0e-27 125.6 71 84.5
Manes.02G032611 Manihot esculenta HOM05D007086 ORTHO05D008927 2.6e-27 125.2 69 85.5
Thecc.03G263200 Theobroma cacao HOM05D007086 ORTHO05D008927 2.6e-27 125.2 71 83.1
Atru.chr9.1458 Acer truncatum HOM05D007086 ORTHO05D008927 3.3e-27 124.8 71 85.9
Potri.001G116000 Populus trichocarpa HOM05D007086 ORTHO05D008927 4.4e-27 124.4 71 81.7
QL12p015352 Quercus lobata HOM05D007086 ORTHO05D008927 4.4e-27 124.4 69 88.4
TWI60G0887 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 5.7e-27 124.0 71 85.9
Thhalv10009271m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 7.5e-27 123.6 71 81.7
Eucgr.E00483 Eucalyptus grandis HOM05D007086 ORTHO05D008927 1.3e-26 122.9 71 81.7
BolC5t29822H Brassica oleracea HOM05D007086 ORTHO05D008927 1.7e-26 122.5 71 80.3
BraA06t24109Z Brassica rapa HOM05D007086 ORTHO05D008927 1.7e-26 122.5 71 80.3
Hma1.2p1_0367F.1_g137100 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 1.7e-26 122.5 71 81.7
Hma1.2p1_3825F.1_g337656 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 1.7e-26 122.5 71 81.7
Aa31LG1G2230 Aethionema arabicum HOM05D007086 ORTHO05D008927 2.2e-26 122.1 71 81.7
Sp1g11000 Schrenkiella parvula HOM05D007086 ORTHO05D008927 2.2e-26 122.1 71 80.3
Nn1g01223 Nelumbo nucifera HOM05D007086 ORTHO05D008927 2.8e-26 121.7 72 83.3
THA.LOC104809439 Tarenaya hassleriana HOM05D007086 ORTHO05D008927 2.8e-26 121.7 71 80.3
CARHR012690 Cardamine hirsuta HOM05D007086 ORTHO05D008927 3.7e-26 121.3 70 81.4
Os07g0573600 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 3.7e-26 121.3 71 78.9
MD04G1245800 Malus domestica HOM05D007086 ORTHO05D008927 4.8e-26 120.9 71 81.7
MD12G1192500 Malus domestica HOM05D007086 ORTHO05D008927 4.8e-26 120.9 71 81.7
Duzib084G0284 Durio zibethinus HOM05D007086 ORTHO05D008927 6.3e-26 120.6 71 83.1
AL1G23730 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 8.3e-26 120.2 69 81.2
AT1G12400 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 1.1e-25 119.8 69 79.7
Os05g0198700 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 1.1e-25 119.8 71 77.5
Rhsim07G0100800 Rhododendron simsii HOM05D007086 ORTHO05D008927 1.1e-25 119.8 77 79.2
Sc01g0009150 Simmondsia chinensis HOM05D007086 ORTHO05D008927 1.1e-25 119.8 69 82.6
ClCG00G001010 Citrullus lanatus HOM05D007086 ORTHO05D008927 1.4e-25 119.4 71 78.9
PSO478G4385 Papaver somniferum HOM05D007086 ORTHO05D008927 1.4e-25 119.4 71 80.3
Sabra01G0089100 Salix brachista HOM05D007086 ORTHO05D008927 1.4e-25 119.4 71 78.9
CsaV3_3G003270 Cucumis sativus L. HOM05D007086 ORTHO05D008927 1.8e-25 119.0 71 78.9
FAN08G0246 Fragaria x ananassa HOM05D007086 ORTHO05D008927 1.8e-25 119.0 71 81.7
Dinv00491 Davidia involucrata HOM05D007086 ORTHO05D008927 2.4e-25 118.6 81 77.8
Prupe.5G081100 Prunus persica HOM05D007086 ORTHO05D008927 2.4e-25 118.6 71 80.3
EL10Ac7g17105 Beta vulgaris HOM05D007086 ORTHO05D008927 3.1e-25 118.2 69 82.6
RcHm_v2.0_Chr7g0201071 Rosa chinensis HOM05D007086 ORTHO05D008927 3.1e-25 118.2 71 83.1
Carub.0001s1205 Capsella rubella HOM05D007086 ORTHO05D008927 5.3e-25 117.5 69 76.8
Gohir.A12G221900 Gossypium hirsutum HOM05D007086 ORTHO05D008927 7.0e-25 117.1 71 78.9
Gohir.D12G224400 Gossypium hirsutum HOM05D007086 ORTHO05D008927 7.0e-25 117.1 71 78.9
Gorai.008G240500 Gossypium raimondii HOM05D007086 ORTHO05D008927 7.0e-25 117.1 71 78.9
BcaB03g13189 Brassica carinata HOM05D007086 ORTHO05D008927 9.1e-25 116.7 71 76.1
SalBow6G6939 Salvia bowleyana HOM05D007086 ORTHO05D008927 2.0e-24 115.5 72 76.4
PSO782G0332 Papaver somniferum HOM05D007086 ORTHO05D008927 2.7e-24 115.2 71 77.5
CDE11G0364 Ceratophyllum demersum HOM05D007086 ORTHO05D008927 3.5e-24 114.8 69 75.4
PGR031G3010 Punica granatum HOM05D007086 ORTHO05D008927 3.5e-24 114.8 71 74.6
Solyc08g079610.3 Solanum lycopersicum HOM05D007086 ORTHO05D008927 4.5e-24 114.4 71 77.5
Sopen08g027960 Solanum pennellii HOM05D007086 ORTHO05D008927 4.5e-24 114.4 71 77.5
PGSC0003DMG400019087 Solanum tuberosum HOM05D007086 ORTHO05D008927 4.5e-24 114.4 71 77.5
Potri.009G138800 Populus trichocarpa HOM05D007086 ORTHO05D008927 5.9e-24 114.0 69 76.8
Glyma.05G239900 Glycine max HOM05D007086 ORTHO05D008927 1.0e-23 113.2 71 73.2
BolC8t49170H Brassica oleracea HOM05D007086 ORTHO05D008927 1.3e-23 112.8 71 74.6
Lj4g0021147 Lotus japonicus HOM05D007086 ORTHO05D008927 1.3e-23 112.8 69 73.9
PGSC0003DMG400003953 Solanum tuberosum HOM05D007086 ORTHO05D008927 1.3e-23 112.8 71 76.1
Glyma.08G047000 Glycine max HOM05D007086 ORTHO05D008927 2.2e-23 112.1 69 73.9
SGA_v2.0_scaffold37G14847 Striga asiatica HOM05D007086 ORTHO05D008927 2.2e-23 112.1 71 73.2
Cc08_g13390 Coffea canephora HOM05D007086 ORTHO05D008927 2.9e-23 111.7 71 76.1
Medtr5g055890 Medicago truncatula HOM05D007086 ORTHO05D008927 5.0e-23 110.9 71 70.4
Peaxi162Scf00051g00316 Petunia axillaris HOM05D007086 ORTHO05D008927 5.0e-23 110.9 71 74.6
Peaxi162Scf00078g00627 Petunia axillaris HOM05D007086 ORTHO05D008927 5.0e-23 110.9 71 74.6
Lalb_Chr05g0222151 Lupinus albus HOM05D007086 ORTHO05D008927 8.5e-23 110.2 69 72.5
Phvul.009G128900 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 1.9e-22 109.0 71 71.8
MBI12_g10752_MAGBIO Magnolia biondii HOM05D007086 ORTHO05D008927 2.5e-22 108.6 71 76.1
Aqoxy7G00621 Aquilegia oxysepala HOM05D007086 ORTHO05D008927 4.2e-22 107.8 63 85.7
Phvul.002G322200 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 4.2e-22 107.8 69 71.0
TPR.G38364 Trifolium pratense HOM05D007086 ORTHO05D008927 4.2e-22 107.8 71 70.4
HanXRQChr02g0046221 Helianthus annuus HOM05D007086 ORTHO05D008927 7.2e-22 107.1 71 73.2
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 6.1e-21 104.0 66 71.2
AagrBONN_evm.TU.Sc2ySwM_362.2353 Anthoceros agrestis HOM05D002603 ORTHO05D008927 1.4e-20 102.8 69 63.8
FAN12G2970 Fragaria x ananassa HOM05D007086 ORTHO05D008927 1.8e-20 102.4 71 74.6
FAN12G3233 Fragaria x ananassa HOM05D007086 ORTHO05D008927 1.8e-20 102.4 71 74.6
Ciclev10024015m.g Citrus clementina HOM05D007086 ORTHO05D008927 2.3e-20 102.1 59 81.4
Migut.A00849 Erythranthe guttata HOM05D007086 ORTHO05D008927 3.0e-20 101.7 69 69.6
Migut.I00707 Erythranthe guttata HOM05D007086 ORTHO05D008927 3.0e-20 101.7 69 69.6
SGA_v2.0_scaffold511G52628 Striga asiatica HOM05D007086 ORTHO05D008927 4.0e-20 101.3 72 68.1
Pp3c1_34050 Physcomitrium patens HOM05D007086 ORTHO05D008927 6.8e-20 100.5 69 62.3
Rhsim02G0194900 Rhododendron simsii HOM05D007086 ORTHO05D008927 1.2e-19 99.8 117 50.4
Rhsim02G0196200 Rhododendron simsii HOM05D007086 ORTHO05D008927 1.2e-19 99.8 75 65.3
Mapoly0088s0021 Marchantia polymorpha HOM05D007086 ORTHO05D008927 1.5e-19 99.4 69 63.8
FAN18G4230 Fragaria x ananassa HOM05D001611 ORTHO05D001464 2.0e-19 99.0 59 81.4
MELO3C013994.2 Cucumis melo HOM05D000693 ORTHO05D001102 3.4e-19 98.2 67 71.6
BraA08t35207Z Brassica rapa HOM05D001611 ORTHO05D001464 4.4e-19 97.8 76 63.2
Prupe.5G081200 Prunus persica HOM05D007086 ORTHO05D008927 4.4e-19 97.8 59 79.7
C08p15410 Brassica napus HOM05D001611 ORTHO05D001464 5.7e-19 97.4 76 63.2
AL2G12840 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 7.5e-19 97.1 70 71.4
ClCG00G001020 Citrullus lanatus HOM05D000693 ORTHO05D001102 1.3e-18 96.3 59 74.6
Lj4g0007995 Lotus japonicus HOM05D007086 ORTHO05D008927 1.7e-18 95.9 87 55.2
TWI77G0094 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 1.7e-18 95.9 56 82.1
CAN.G630.56 Capsicum annuum HOM05D007086 ORTHO05D008927 3.7e-18 94.7 63 74.6
AT1G62886 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 6.3e-18 94.0 70 67.1
MD06G1064000 Malus domestica HOM05D007086 ORTHO05D008927 8.3e-18 93.6 60 76.7
arahy.Tifrunner.gnm1.ann1.NIEM70 Arachis hypogaea HOM05D007086 ORTHO05D008927 1.8e-17 92.4 71 63.4
Carub.0002s0211 Capsella rubella HOM05D007086 ORTHO05D008927 1.8e-17 92.4 72 65.3
Nitab4.5_0005241g0010 Nicotiana tabacum HOM05D007086 ORTHO05D008927 3.1e-17 91.7 63 68.3
SEGI_31798 Sequoiadendron giganteum HOM05D007086 ORTHO05D008927 3.1e-17 91.7 71 57.7
Nitab4.5_0000633g0050 Nicotiana tabacum HOM05D007086 ORTHO05D008927 5.4e-17 90.9 68 67.6
Nitab4.5_0007130g0020 Nicotiana tabacum HOM05D007086 ORTHO05D008927 7.0e-17 90.5 59 74.6
CARHR048860 Cardamine hirsuta HOM05D007086 ORTHO05D008927 9.1e-17 90.1 74 64.9
Thhalv10029420m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 1.2e-16 89.7 73 63.0
Zm00001eb267070 Zea mays HOM05D007086 ORTHO05D008927 1.2e-16 89.7 57 66.7
arahy.Tifrunner.gnm1.ann1.T092PF Arachis hypogaea HOM05D007086 ORTHO05D008927 2.7e-16 88.6 71 56.3
Lsat_1_v5_gn_6_9641 Lactuca sativa HOM05D007086 ORTHO05D008927 1.0e-15 86.7 61 70.5
A08p32850 Brassica napus HOM05D001611 ORTHO05D001464 3.8e-15 84.7 76 55.3
Os05g0108500 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 6.6e-15 84.0 61 67.2
CBR_g51826 Chara braunii HOM05D007086 ORTHO05D008927 1.9e-14 82.4 68 51.5
Thhalv10023898m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 2.6e-11 72.0 83 50.6
Lalb_Chr18g0049811 Lupinus albus HOM05D007086 ORTHO05D008927 2.6e-11 72.0 54 61.1
Dinv08998 Davidia involucrata HOM05D007086 ORTHO05D008927 3.4e-11 71.6 59 66.1
HPP92_014763 Vanilla planifolia HOM05D007086 ORTHO05D008927 9.8e-11 70.1 40 75.0
MCO09G617 Micromonas commoda HOM05D007086 ORTHO05D008927 7.8e-08 60.5 69 37.7


User provided reference genes

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