Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 1.6e-63 245.7 112 100.0
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 3.9e-57 224.6 112 88.4
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 6.9e-54 213.8 98 100.0
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 4.8e-47 191.0 112 72.3
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 2.4e-46 188.7 112 69.6
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 3.1e-46 188.3 112 71.4
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 3.1e-46 188.3 112 71.4
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 1.5e-45 186.0 110 70.9
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 2.0e-45 185.7 110 70.0
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 1.0e-44 183.3 112 67.9
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 1.0e-44 183.3 112 67.9
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 1.0e-44 183.3 112 69.6
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 2.9e-44 181.8 110 69.1
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 6.5e-44 180.6 112 68.8
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 8.5e-44 180.3 112 69.6
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 1.1e-43 179.9 112 67.9
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 1.4e-43 179.5 81 100.0
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 3.2e-43 178.3 112 65.2
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 1.2e-42 176.4 112 67.9
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.2e-42 176.4 113 70.8
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 2.1e-42 175.6 113 69.0
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 2.1e-42 175.6 113 70.8
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 2.7e-42 175.3 113 69.9
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 3.6e-42 174.9 113 69.9
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 3.6e-42 174.9 113 69.9
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 4.6e-42 174.5 113 69.0
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 4.6e-42 174.5 112 64.3
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 3.9e-41 171.4 112 62.5
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 6.7e-41 170.6 113 69.0
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 1.1e-40 169.9 113 67.3
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 1.5e-40 169.5 110 63.6
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.9e-40 169.1 113 65.5
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.9e-40 169.1 113 65.5
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.9e-40 169.1 113 65.5
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 1.9e-40 169.1 113 65.5
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 2.5e-40 168.7 113 69.0
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 3.3e-40 168.3 112 63.4
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 3.3e-40 168.3 112 63.4
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 7.4e-40 167.2 112 63.4
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 7.4e-40 167.2 115 68.7
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 9.7e-40 166.8 112 62.5
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 4.8e-39 164.5 112 62.5
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 4.8e-39 164.5 112 62.5
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 8.2e-39 163.7 112 62.5
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 8.2e-39 163.7 113 65.5
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 1.1e-38 163.3 112 63.4
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 4.1e-38 161.4 113 61.1
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 5.3e-38 161.0 113 63.7
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 9.1e-38 160.2 113 61.1
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 4.5e-37 157.9 112 58.9
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 5.9e-37 157.5 110 61.8
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 1.0e-36 156.8 102 63.7
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 1.3e-36 156.4 112 58.9
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 1.3e-36 156.4 112 58.9
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 2.9e-36 155.2 113 60.2
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 3.2e-35 151.8 113 58.4
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 4.2e-35 151.4 110 59.1
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 1.2e-34 149.8 113 58.4
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 7.9e-34 147.1 110 60.0
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 1.8e-33 146.0 110 58.2
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 1.1e-32 143.3 104 63.5
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 2.0e-32 142.5 95 64.2
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 3.3e-32 141.7 113 55.8
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 4.4e-32 141.4 110 55.5
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 7.4e-32 140.6 110 53.6
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 7.4e-32 140.6 110 53.6
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 7.4e-32 140.6 110 53.6
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 7.4e-32 140.6 110 53.6
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 7.4e-32 140.6 110 53.6
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 7.4e-32 140.6 110 53.6
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 7.4e-32 140.6 110 53.6
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 7.4e-32 140.6 113 54.9
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 2.2e-31 139.0 114 55.3
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 2.2e-31 139.0 110 56.4
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 6.3e-31 137.5 113 55.8
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 8.2e-31 137.1 112 54.5
QL08p046069 Quercus lobata HOM05D006029 ORTHO05D007439 1.4e-30 136.3 68 88.2
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 2.4e-30 135.6 113 57.5
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 4.1e-30 134.8 112 56.2
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 5.3e-30 134.4 112 56.2
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 6.9e-30 134.0 112 56.2
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 1.2e-29 133.3 112 55.4
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 1.2e-29 133.3 113 58.4
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 2.0e-29 132.5 112 56.2
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 3.4e-29 131.7 112 55.4
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 1.3e-28 129.8 115 49.6
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 2.2e-28 129.0 116 47.4
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 5.0e-28 127.9 85 61.2
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 1.4e-27 126.3 113 52.2
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 1.4e-27 126.3 112 51.8
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 1.9e-27 125.9 113 53.1
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 4.2e-27 124.8 139 47.5
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 9.4e-27 123.6 113 51.3
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 9.4e-27 123.6 113 51.3
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 9.4e-27 123.6 113 51.3
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 9.4e-27 123.6 113 50.4
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 1.2e-26 123.2 112 51.8
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 3.6e-26 121.7 112 49.1
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 3.6e-26 121.7 112 49.1
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 3.6e-26 121.7 112 49.1
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 3.6e-26 121.7 112 49.1
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 3.6e-26 121.7 112 49.1
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 3.6e-26 121.7 112 49.1
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 3.6e-26 121.7 112 49.1
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 3.6e-26 121.7 112 49.1
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 3.6e-26 121.7 113 51.3
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 3.6e-26 121.7 112 50.9
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 4.7e-26 121.3 112 49.1
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 6.1e-26 120.9 113 51.3
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 3.0e-25 118.6 112 48.2
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 7.4e-24 114.0 113 51.3
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 1.3e-23 113.2 112 47.3
ATR0751G147 Amborella trichopoda HOM05D006029 ORTHO05D007439 2.2e-23 112.5 113 48.7
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 1.1e-22 110.2 111 45.0
Nitab4.5_0009816g0020 Nicotiana tabacum HOM05D006029 ORTHO05D007439 4.1e-22 108.2 83 54.2
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 2.0e-21 105.9 109 45.9
Mapoly0101s0063 Marchantia polymorpha HOM05D006029 ORTHO05D007439 5.9e-21 104.4 111 45.9
SMO159G0009 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 1.1e-19 100.1 113 46.0
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 2.5e-19 99.0 70 60.0
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 2.5e-19 99.0 75 57.3
CBR_g49523 Chara braunii HOM05D006029 ORTHO05D007439 7.2e-19 97.4 98 48.0
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 2.7e-18 95.5 87 51.7
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 4.0e-17 91.7 73 50.7
Lsat_1_v5_gn_6_81300 Lactuca sativa HOM05D006029 ORTHO05D007439 4.0e-17 91.7 70 57.1
Cc08_g08090 Coffea canephora HOM05D006029 ORTHO05D007439 1.5e-16 89.7 55 65.5
MCO11G240 Micromonas commoda HOM05D006029 ORTHO05D007439 7.5e-16 87.4 111 38.7
Ca_09543_v3 Cicer arietinum L. HOM05D006029 ORTHO05D007439 6.3e-15 84.3 79 51.9
SMO347G0197 Selaginella moellendorffii HOM05D006029 ORTHO05D007439 5.3e-14 81.3 113 38.1
CBR_g31408 Chara braunii HOM05D006029 ORTHO05D007439 3.5e-13 78.6 71 49.3
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 5.0e-12 74.7 71 47.9
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 1.4e-09 66.6 115 34.8
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 1.8e-09 66.2 115 33.9
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 5.2e-09 64.7 115 33.9
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 1.2e-08 63.5 102 34.3
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 1.2e-08 63.5 95 38.9
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 3.4e-08 62.0 102 33.3
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 3.4e-08 62.0 116 32.8
MCO13G374 Micromonas commoda HOM05D002276 ORTHO05D002381 3.7e-07 58.5 49 57.1
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 3.7e-07 58.5 118 31.4
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 4.8e-07 58.2 115 31.3
Pp3c26_5120 Physcomitrium patens HOM05D002276 ORTHO05D002381 6.3e-07 57.8 69 44.9
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 8.3e-07 57.4 117 33.3
Medtr3g093800 Medicago truncatula HOM05D002276 ORTHO05D002381 1.4e-06 56.6 61 44.3
Prupe.2G265300 Prunus persica HOM05D002276 ORTHO05D002381 1.4e-06 56.6 74 41.9
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 1.8e-06 56.2 106 35.8
SMO364G0116 Selaginella moellendorffii HOM05D002276 ORTHO05D002381 1.8e-06 56.2 61 49.2
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 1.8e-06 56.2 114 34.2
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 1.8e-06 56.2 114 34.2
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 2.4e-06 55.8 124 30.6
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 2.4e-06 55.8 114 29.8
Actinidia20794 Actinidia chinensis HOM05D002276 ORTHO05D002381 3.1e-06 55.5 46 52.2
RcHm_v2.0_Chr1g0372471 Rosa chinensis HOM05D002276 ORTHO05D002381 3.1e-06 55.5 48 50.0
CANSAT56G0568 Cannabis sativa HOM05D002276 ORTHO05D002381 5.4e-06 54.7 48 47.9
ECA238G3222 Erigeron canadensis HOM05D002276 ORTHO05D002381 5.4e-06 54.7 71 43.7
Mapoly0003s0175 Marchantia polymorpha HOM05D002276 ORTHO05D002381 5.4e-06 54.7 61 47.5
CAN.G1229.11 Capsicum annuum HOM05D002276 ORTHO05D002381 7.0e-06 54.3 46 52.2
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 7.0e-06 54.3 106 33.0
Hma1.2p1_0174F.1_g076750 Hydrangea macrophylla HOM05D002276 ORTHO05D002381 7.0e-06 54.3 46 50.0
MD01G1169100 Malus domestica HOM05D002276 ORTHO05D002381 7.0e-06 54.3 46 50.0
MD07G1235000 Malus domestica HOM05D002276 ORTHO05D002381 7.0e-06 54.3 46 50.0
Manes.09G123400 Manihot esculenta HOM05D002276 ORTHO05D002381 7.0e-06 54.3 46 50.0
Nitab4.5_0000171g0260 Nicotiana tabacum HOM05D002276 ORTHO05D002381 7.0e-06 54.3 46 52.2
Nitab4.5_0006356g0040 Nicotiana tabacum HOM05D002276 ORTHO05D002381 7.0e-06 54.3 46 52.2
Rhsim05G0231600 Rhododendron simsii HOM05D002276 ORTHO05D002381 7.0e-06 54.3 46 52.2
Solyc03g095720.3 Solanum lycopersicum HOM05D002276 ORTHO05D002381 7.0e-06 54.3 46 52.2
Sopen03g025650 Solanum pennellii HOM05D002276 ORTHO05D002381 7.0e-06 54.3 46 52.2
PGSC0003DMG400020602 Solanum tuberosum HOM05D002276 ORTHO05D002381 7.0e-06 54.3 46 52.2
Thecc.04G150200 Theobroma cacao HOM05D002276 ORTHO05D002381 7.0e-06 54.3 46 50.0
Thecc.10G184700 Theobroma cacao HOM05D002276 ORTHO05D002381 7.0e-06 54.3 50 48.0
Aqoxy4G03275 Aquilegia oxysepala HOM05D002276 ORTHO05D002381 9.1e-06 53.9 48 47.9
EL10Ac3g06123 Beta vulgaris HOM05D002276 ORTHO05D002381 9.1e-06 53.9 82 35.4
Haze_09331 Corylus avellana HOM05D002276 ORTHO05D002381 9.1e-06 53.9 61 42.6
Gohir.D02G003200 Gossypium hirsutum HOM05D002276 ORTHO05D002381 9.1e-06 53.9 73 39.7
Lsat_1_v5_gn_2_126800 Lactuca sativa HOM05D002276 ORTHO05D002381 9.1e-06 53.9 76 42.1
Lj8C53T13 Lonicera japonica HOM05D002276 ORTHO05D002381 9.1e-06 53.9 46 52.2
Os03g0815900 Oryza sativa ssp. japonica HOM05D002276 ORTHO05D002381 9.1e-06 53.9 76 43.4
Os07g0229700 Oryza sativa ssp. japonica HOM05D002276 ORTHO05D002381 9.1e-06 53.9 75 41.3
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 9.1e-06 53.9 113 32.7
Pp3c4_25990 Physcomitrium patens HOM05D002276 ORTHO05D002381 9.1e-06 53.9 53 49.1
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 9.1e-06 53.9 115 29.6
vmacro20377 Vaccinium macrocarpon HOM05D002276 ORTHO05D002381 9.1e-06 53.9 46 52.2


User provided reference genes

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