Gene: Pp3c4_25990
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c4_25990
- Transcript Identifier Pp3c4_25990V3.2
- Gene Type Coding gene
- Location Chr04 : 17377995-17380148 : positive
Gene Family Information
- ID HOM05D002276
- #Genes/#Species 296/95
- Phylogenetic origin
- ID ORTHO05D002381
- #Genes/#Species 293/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- name Pp3c4_25990V3.2
- pacid 32922499
- alias Pp1s110_49V6
- alias Phypa_134298
- alias Phpat.004G099200
- uniprot A0A2K1KQ43
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | GOA Database | transcription, DNA-templated | |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated | |
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0010162 | ISO | PLAZA Integrative Orthology | seed dormancy process | AT2G38560 |
| GO:0009739 | ISO | PLAZA Integrative Orthology | response to gibberellin | AT2G38560 |
| GO:0034243 | ISO | PLAZA Integrative Orthology | regulation of transcription elongation from RNA polymerase II promoter | AT2G38560 |
| GO:0009845 | ISO | PLAZA Integrative Orthology | seed germination | AT2G38560 |
| GO:0009910 | ISO | PLAZA Integrative Orthology | negative regulation of flower development | AT2G38560 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008270 | IEA | GOA Database | zinc ion binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001222 | Zinc finger, TFIIS-type |
| IPR003618 | Transcription elongation factor S-II, central domain |
| IPR035100 | Transcription elongation factor, IIS-type |
| IPR006289 | Transcription elongation factor, TFIIS |
| IPR035441 | TFIIS/LEDGF domain superfamily |
| IPR017923 | Transcription factor IIS, N-terminal |
| IPR036575 | Transcription elongation factor S-II, central domain superfamily |
| IPR003617 | Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type |
| Mapman id | Description |
|---|---|
| 15.3.5.6 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.TFIIs transcription elongation factor |