Gene: AT4G07950

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G07950
  • Transcript Identifier AT4G07950.1
  • Gene Type Coding gene
  • Location Chr4 : 4798910-4799510 : positive

Gene Family Information

  • ID HOM05D006029
  • #Genes/#Species 131/87
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G07950.1
  • uniprot Q9ZQC0

Descriptions

  • Description DNA-directed RNA polymerase, subunit M, archaeal
  • Computational description DNA-directed RNA polymerase, subunit M, archaeal; FUNCTIONS IN: in 6 functions; INVOLVED IN: RNA elongation, regulation of transcription, DNA-dependent, transcription, regulation of transcription; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), DNA-directed RNA polymerase, M/15kDa subunit (InterPro:IPR001529), DNA-directed RNA polymerase, subunit M, archaeal (InterPro:IPR006288), DNA-directed RNA polymerase M, 15kDa subunit, conserved site (InterPro:IPR019761); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase, subunit M, archaeal (TAIR:AT1G01210.1); Has 1132 Blast hits to 1132 proteins in 328 species: Archae - 242; Bacteria - 0; Metazoa - 282; Fungi - 291; Plants - 114; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042779
IEA
Gene OntologytRNA 3'-trailer cleavage
GO:0042779
IEA
InterProtRNA 3'-trailer cleavage
GO:0006355
IEA
Gene Ontologyregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0006351
IEA
GOA Databasetranscription, DNA-templated
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0006386
IBA
Gene Ontologytermination of RNA polymerase III transcription1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003899
IEA
GOA DatabaseDNA-directed 5'-3' RNA polymerase activity
GO:0003899
IBA
Gene OntologyDNA-directed 5'-3' RNA polymerase activity1
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IDA
GOA Databasecytoplasm
GO:0005737
HDA
Gene Ontologycytoplasm2
GO:0005634
IDA
IEA
GOA Databasenucleus
GO:0005634
HDA
ISM
Gene Ontologynucleus2
GO:0005730
IEA
GOA Databasenucleolus
GO:0005666
IBA
Gene OntologyRNA polymerase III complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001222 Zinc finger, TFIIS-type
IPR012164 DNA-directed RNA polymerase subunit/transcription factor S
IPR001529 DNA-directed RNA polymerase, M/15kDa subunit
IPR006288 Transcription factor S
IPR034014 Pol III subunit C11, C-terminal zinc ribbon
Mapman id Description
35.1 not assigned.annotated