Gene: Sopen03g025650

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g025650
  • Transcript Identifier Sopen03g025650.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 59109556-59113426 : negative

Gene Family Information

  • ID HOM05D002276
  • #Genes/#Species 296/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g025650.1

Descriptions

  • Description Encodes RNA polymerase II transcript elongation factor TFIIS. Complements yeast TFIIS mutation. Mutant plants display essentially normal development, but they flower slightly earlier than the wild type and show clearly reduced seed dormancy. | transcript elongation factor IIS (TFIIS) | CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type , Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type , Transcription elongation factor S-II, central domain , Transcription factor IIS, N-terminal , Transcription elongation factor S-IIM , Transcription elongation factor, IIS , Transcription elongation factor, TFIIS , Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal | BEST Arabidopsis thaliana protein match is: F-box family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0010162
ISO
PLAZA Integrative Orthologyseed dormancy process AT2G38560
GO:0009739
ISO
PLAZA Integrative Orthologyresponse to gibberellin AT2G38560
GO:0034243
ISO
PLAZA Integrative Orthologyregulation of transcription elongation from RNA polymerase II promoter AT2G38560
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT2G38560
GO:0009910
ISO
PLAZA Integrative Orthologynegative regulation of flower development AT2G38560

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
InterProzinc ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035100 Transcription elongation factor, IIS-type
IPR006289 Transcription elongation factor, TFIIS
IPR001222 Zinc finger, TFIIS-type
IPR035441 TFIIS/LEDGF domain superfamily
IPR003617 Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
IPR003618 Transcription elongation factor S-II, central domain
IPR017923 Transcription factor IIS, N-terminal
IPR036575 Transcription elongation factor S-II, central domain superfamily
Mapman id Description
15.3.5.6 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription elongation.TFIIs transcription elongation factor