Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003282 Carpinus fangiana HOM05D003101 ORTHO05D003550 0.0e+00 1172.1 648 100.0
Haze_25690 Corylus avellana HOM05D003101 ORTHO05D003550 8.7e-258 893.6 649 79.4
QL02p085909 Quercus lobata HOM05D003101 ORTHO05D003550 2.7e-134 483.4 639 52.4
TAR383G0973 Trochodendron aralioides HOM05D003101 ORTHO05D003550 3.6e-78 297.0 587 38.8
GSVIVG01017130001 Vitis vinifera HOM05D003101 ORTHO05D003550 4.5e-73 280.0 624 34.8
TAR626G0726 Trochodendron aralioides HOM05D003101 ORTHO05D003550 5.5e-71 273.1 609 36.3
Nn2g11806 Nelumbo nucifera HOM05D003101 ORTHO05D003550 8.0e-70 269.2 587 35.1
Cfa002053 Carpinus fangiana HOM05D003101 ORTHO05D003550 4.1e-66 256.9 615 33.3
Prupe.3G073300 Prunus persica HOM05D003101 ORTHO05D003550 9.2e-66 255.8 594 33.5
MBI01_g16637_MAGBIO Magnolia biondii HOM05D003101 ORTHO05D003550 2.7e-65 254.2 670 33.9
Manes.04G121800 Manihot esculenta HOM05D003101 ORTHO05D003550 5.9e-65 253.1 629 33.1
Potri.003G056500 Populus trichocarpa HOM05D003101 ORTHO05D003550 7.8e-65 252.7 570 35.4
Dinv38057 Davidia involucrata HOM05D003101 ORTHO05D003550 1.3e-64 251.9 597 35.2
Actinidia01797 Actinidia chinensis HOM05D003101 ORTHO05D003550 3.3e-63 247.3 607 32.8
Nn8g39252 Nelumbo nucifera HOM05D003101 ORTHO05D003550 5.6e-63 246.5 598 34.6
TAR624G0149 Trochodendron aralioides HOM05D003101 ORTHO05D003550 5.6e-63 246.5 715 33.0
Thecc.06G084100 Theobroma cacao HOM05D003101 ORTHO05D003550 9.5e-63 245.7 571 33.5
MD09G1214900 Malus domestica HOM05D003101 ORTHO05D003550 1.2e-62 245.4 612 33.8
Manes.11G048500 Manihot esculenta HOM05D003101 ORTHO05D003550 4.0e-61 240.4 623 33.7
QL05p025236 Quercus lobata HOM05D003101 ORTHO05D003550 8.9e-61 239.2 566 32.3
CiPaw.01G240300 Carya illinoinensis HOM05D003101 ORTHO05D003550 5.8e-60 236.5 603 33.0
COL.COLO4_30344 Corchorus olitorius HOM05D003101 ORTHO05D003550 2.2e-59 234.6 560 32.7
Gorai.009G132700 Gossypium raimondii HOM05D003101 ORTHO05D003550 2.9e-59 234.2 598 33.4
Potri.001G178900 Populus trichocarpa HOM05D003101 ORTHO05D003550 4.9e-59 233.4 574 34.1
Cc04_g03550 Coffea canephora HOM05D003101 ORTHO05D003550 1.4e-58 231.9 580 33.4
Gohir.D05G128500 Gossypium hirsutum HOM05D003101 ORTHO05D003550 2.4e-58 231.1 598 33.3
ClCG09G002280 Citrullus lanatus HOM05D003101 ORTHO05D003550 5.4e-58 229.9 594 33.3
Eucgr.F03010 Eucalyptus grandis HOM05D003101 ORTHO05D003550 5.4e-58 229.9 613 33.8
CsaV3_7G033030 Cucumis sativus L. HOM05D003101 ORTHO05D003550 1.7e-56 224.9 739 32.2
Sabra03G0031900 Salix brachista HOM05D003101 ORTHO05D003550 6.6e-56 223.0 585 33.2
Gohir.A10G079500 Gossypium hirsutum HOM05D003101 ORTHO05D003550 1.9e-55 221.5 602 32.4
Gohir.D10G072000 Gossypium hirsutum HOM05D003101 ORTHO05D003550 1.9e-55 221.5 591 32.3
Gorai.011G077400 Gossypium raimondii HOM05D003101 ORTHO05D003550 1.9e-55 221.5 591 32.3
Atru.chr1.3230 Acer truncatum HOM05D003101 ORTHO05D003550 4.3e-55 220.3 588 32.3
Duzib160G0782 Durio zibethinus HOM05D003101 ORTHO05D003550 5.6e-55 219.9 569 32.3
Aqoxy7G01818 Aquilegia oxysepala HOM05D003101 ORTHO05D003550 7.3e-55 219.5 616 32.6
Duzib235G1478 Durio zibethinus HOM05D003101 ORTHO05D003550 2.1e-54 218.0 565 33.6
CAN.G438.56 Capsicum annuum HOM05D003101 ORTHO05D003550 1.1e-53 215.7 609 31.0
Gohir.A05G127600 Gossypium hirsutum HOM05D003101 ORTHO05D003550 1.8e-53 214.9 598 32.1
CANSAT56G0412 Cannabis sativa HOM05D003101 ORTHO05D003550 4.0e-53 213.8 607 31.1
MELO3C023364.2 Cucumis melo HOM05D000041 ORTHO05D000061 5.2e-53 213.4 568 32.7
RcHm_v2.0_Chr2g0137581 Rosa chinensis HOM05D003101 ORTHO05D003550 5.2e-53 213.4 632 31.8
Phvul.005G172200 Phaseolus vulgaris HOM05D003101 ORTHO05D003550 6.8e-53 213.0 609 32.2
Sed0012835 Sechium edule HOM05D003101 ORTHO05D003550 6.8e-53 213.0 631 33.9
MSTRG.11085 Avicennia marina HOM05D003101 ORTHO05D003550 8.9e-53 212.6 643 29.9
Solyc03g120300.3 Solanum lycopersicum HOM05D003101 ORTHO05D003550 2.6e-52 211.1 606 30.9
Dinv30524 Davidia involucrata HOM05D003101 ORTHO05D003550 5.8e-52 209.9 486 34.8
Rhsim08G0219800 Rhododendron simsii HOM05D003101 ORTHO05D003550 5.8e-52 209.9 602 31.2
FvH4_6g30960 Fragaria vesca HOM05D003101 ORTHO05D003550 7.5e-52 209.5 574 31.7
Lj3g0021137 Lotus japonicus HOM05D003101 ORTHO05D003550 9.8e-52 209.1 604 31.3
MD00G1201000 Malus domestica HOM05D003101 ORTHO05D003550 9.8e-52 209.1 563 31.6
Lalb_Chr22g0351191 Lupinus albus HOM05D003101 ORTHO05D003550 1.3e-51 208.8 561 33.0
Sopen03g039190 Solanum pennellii HOM05D003101 ORTHO05D003550 1.3e-51 208.8 606 31.2
Gohir.A09G084000 Gossypium hirsutum HOM05D003101 ORTHO05D003550 4.9e-51 206.8 570 30.4
Gohir.D03G074200 Gossypium hirsutum HOM05D003101 ORTHO05D003550 4.9e-51 206.8 598 31.4
VMungo1080G1584 Vigna mungo HOM05D003101 ORTHO05D003550 8.3e-51 206.1 596 32.0
PGR102G1309 Punica granatum HOM05D003101 ORTHO05D003550 1.4e-50 205.3 649 30.7
Haze_16450 Corylus avellana HOM05D003101 ORTHO05D003550 1.9e-50 204.9 559 32.6
Gorai.002G058500 Gossypium raimondii HOM05D003101 ORTHO05D003550 1.9e-50 204.9 597 30.8
vmacro18925 Vaccinium macrocarpon HOM05D003101 ORTHO05D003550 1.9e-50 204.9 619 31.0
TWI18G0488 Tripterygium wilfordii HOM05D003101 ORTHO05D003550 2.4e-50 204.5 619 30.7
Ciclev10024985m.g Citrus clementina HOM05D003101 ORTHO05D003550 4.1e-50 203.8 602 31.1
Sed0009602 Sechium edule HOM05D003101 ORTHO05D003550 5.4e-50 203.4 608 31.7
Glyma.15G013500 Glycine max HOM05D003101 ORTHO05D003550 1.6e-49 201.8 644 32.0
Oeu033489.1 Olea europaea HOM05D003101 ORTHO05D003550 2.1e-49 201.4 572 30.1
Actinidia14364 Actinidia chinensis HOM05D003101 ORTHO05D003550 6.0e-49 199.9 607 30.8
PGSC0003DMG402002640 Solanum tuberosum HOM05D003101 ORTHO05D003550 1.0e-48 199.1 605 30.1
FAN14G4821 Fragaria x ananassa HOM05D003101 ORTHO05D003550 1.7e-48 198.4 564 31.0
Gohir.D09G083800 Gossypium hirsutum HOM05D003101 ORTHO05D003550 2.3e-48 198.0 569 36.0
FAN05G5709 Fragaria x ananassa HOM05D003101 ORTHO05D003550 3.9e-48 197.2 590 30.8
Oeu063973.3 Olea europaea HOM05D003101 ORTHO05D003550 5.1e-48 196.8 574 30.0
FAN09G0931 Fragaria x ananassa HOM05D003101 ORTHO05D003550 8.6e-48 196.1 565 30.8
EL10Ac9g21983 Beta vulgaris HOM05D003101 ORTHO05D003550 1.1e-47 195.7 565 30.6
TWI75G0984 Tripterygium wilfordii HOM05D003101 ORTHO05D003550 1.1e-47 195.7 613 30.5
Glyma.13G360400 Glycine max HOM05D003101 ORTHO05D003550 4.3e-47 193.7 610 31.1
Gorai.006G099800 Gossypium raimondii HOM05D003101 ORTHO05D003550 4.3e-47 193.7 570 36.1
TWI12G0521 Tripterygium wilfordii HOM05D003101 ORTHO05D003550 7.3e-47 193.0 592 33.1
Sc12g0009260 Simmondsia chinensis HOM05D003101 ORTHO05D003550 9.5e-47 192.6 602 30.2
Migut.I00851 Erythranthe guttata HOM05D003101 ORTHO05D003550 2.1e-46 191.4 617 28.8
Lj9A506T42 Lonicera japonica HOM05D003101 ORTHO05D003550 4.7e-46 190.3 499 32.3
Gohir.A02G122300 Gossypium hirsutum HOM05D003101 ORTHO05D003550 8.1e-46 189.5 594 30.5
arahy.Tifrunner.gnm1.ann1.QF777V Arachis hypogaea HOM05D003101 ORTHO05D003550 1.1e-45 189.1 559 30.2
arahy.Tifrunner.gnm1.ann1.V93J5T Arachis hypogaea HOM05D003101 ORTHO05D003550 1.1e-45 189.1 559 30.2
Lalb_Chr14g0373491 Lupinus albus HOM05D003101 ORTHO05D003550 1.4e-45 188.7 590 31.7
CDE04G0005 Ceratophyllum demersum HOM05D003101 ORTHO05D003550 2.3e-45 188.0 607 29.7
ATR0037G010 Amborella trichopoda HOM05D003101 ORTHO05D003550 3.1e-45 187.6 668 29.3
HPP92_009103 Vanilla planifolia HOM05D003101 ORTHO05D003550 3.1e-45 187.6 599 31.4
Hma1.2p1_0682F.1_g202700 Hydrangea macrophylla HOM05D003101 ORTHO05D003550 5.2e-45 186.8 581 30.1
Lalb_Chr24g0395781 Lupinus albus HOM05D003101 ORTHO05D003550 5.2e-45 186.8 589 30.4
FAN02G4233 Fragaria x ananassa HOM05D003101 ORTHO05D003550 8.9e-45 186.0 575 30.6
PSO063G5160 Papaver somniferum HOM05D003101 ORTHO05D003550 1.2e-44 185.7 595 29.2
CSS0010012 Camellia sinensis var. sinensis HOM05D003101 ORTHO05D003550 2.0e-44 184.9 530 30.8
MSTRG.4727 Avicennia marina HOM05D003101 ORTHO05D003550 3.4e-44 184.1 673 28.8
Rhsim12G0197000 Rhododendron simsii HOM05D003101 ORTHO05D003550 5.8e-44 183.3 554 30.5
AUR62011620 Chenopodium quinoa HOM05D003101 ORTHO05D003550 7.5e-44 183.0 609 30.2
Psat7g253080 Pisum sativum HOM05D003101 ORTHO05D003550 2.9e-43 181.0 620 29.5
AUR62016435 Chenopodium quinoa HOM05D003101 ORTHO05D003550 4.9e-43 180.3 609 29.9
Oeu024064.1 Olea europaea HOM05D003101 ORTHO05D003550 4.9e-43 180.3 608 30.1
HanXRQChr10g0314941 Helianthus annuus HOM05D003101 ORTHO05D003550 4.1e-42 177.2 558 29.0
Sopen12g022220 Solanum pennellii HOM05D003101 ORTHO05D003550 4.1e-42 177.2 598 29.6
PGSC0003DMG401028616 Solanum tuberosum HOM05D003101 ORTHO05D003550 5.4e-42 176.8 596 28.9
PSO782G5747 Papaver somniferum HOM05D003101 ORTHO05D003550 7.1e-42 176.4 597 29.6
Duzib187G0750 Durio zibethinus HOM05D003101 ORTHO05D026231 2.1e-41 174.9 674 31.3
Hund06603 Selenicereus undatus HOM05D003101 ORTHO05D003550 2.1e-41 174.9 590 28.8
VMungo0331G1559 Vigna mungo HOM05D003101 ORTHO05D003550 1.0e-40 172.6 620 29.2
unitig_8.g3892 Utricularia gibba HOM05D003101 ORTHO05D003550 3.0e-40 171.0 571 27.8
Glyma.07G034600 Glycine max HOM05D003101 ORTHO05D003550 3.9e-40 170.6 608 29.3
Solyc12g042990.3 Solanum lycopersicum HOM05D003101 ORTHO05D003550 5.1e-40 170.2 599 29.7
Ca_20400_v3 Cicer arietinum L. HOM05D003101 ORTHO05D003550 6.6e-40 169.9 587 30.5
Glyma.08G207400 Glycine max HOM05D003101 ORTHO05D003550 6.6e-40 169.9 579 30.2
Medtr4g011920 Medicago truncatula HOM05D003101 ORTHO05D003550 6.6e-40 169.9 608 29.3
TPR.G24188 Trifolium pratense HOM05D003101 ORTHO05D003550 8.6e-40 169.5 612 29.9
Lj3g0018219 Lotus japonicus HOM05D003101 ORTHO05D003550 9.5e-39 166.0 600 28.0
vmacro16945 Vaccinium macrocarpon HOM05D003101 ORTHO05D003550 3.6e-38 164.1 571 29.1
Ciclev10010311m.g Citrus clementina HOM05D003101 ORTHO05D003550 6.2e-38 163.3 589 31.1
Nitab4.5_0003885g0080 Nicotiana tabacum HOM05D003101 ORTHO05D003550 6.2e-38 163.3 545 29.0
CDE02G4492 Ceratophyllum demersum HOM05D003101 ORTHO05D003550 2.4e-37 161.4 609 28.1
unitig_22.g5467 Utricularia gibba HOM05D003101 ORTHO05D003550 5.2e-37 160.2 573 27.2
Phvul.010G151300 Phaseolus vulgaris HOM05D003101 ORTHO05D003550 5.8e-36 156.8 602 30.6
Nitab4.5_0002327g0040 Nicotiana tabacum HOM05D003101 ORTHO05D003550 2.2e-35 154.8 572 29.9
ECA234G1424 Erigeron canadensis HOM05D003101 ORTHO05D003550 4.9e-35 153.7 603 29.2
Nitab4.5_0000351g0170 Nicotiana tabacum HOM05D003101 ORTHO05D003550 1.1e-34 152.5 630 27.9
DCAR_021316 Daucus carota HOM05D003101 ORTHO05D003550 3.2e-34 151.0 648 27.6
Os01g0595100 Oryza sativa ssp. japonica HOM05D003101 ORTHO05D003550 4.2e-34 150.6 719 27.5
Oeu000441.3 Olea europaea HOM05D003101 ORTHO05D003550 1.6e-33 148.7 543 29.1
Ah.01g021210 Amaranthus hybridus HOM05D003101 ORTHO05D003550 1.3e-32 145.6 585 28.4
Lj5C62G3 Lonicera japonica HOM05D003101 ORTHO05D003550 3.9e-32 144.1 594 27.3
Duzib192G0892 Durio zibethinus HOM05D003101 ORTHO05D003550 5.1e-32 143.7 426 29.1
CiPaw.02G152100 Carya illinoinensis HOM05D003101 ORTHO05D003550 2.5e-31 141.4 458 29.9
Nitab4.5_0006801g0040 Nicotiana tabacum HOM05D003101 ORTHO05D003550 9.6e-31 139.4 573 27.9
Zm00001eb357620 Zea mays HOM05D003101 ORTHO05D003550 9.6e-31 139.4 699 27.0
Ah.01g006020 Amaranthus hybridus HOM05D003101 ORTHO05D003550 1.2e-30 139.0 557 26.4
SGA_v2.0_scaffold279G46820 Striga asiatica HOM05D003101 ORTHO05D003550 1.6e-30 138.7 593 28.2
SGA_v2.0_scaffold117G32385 Striga asiatica HOM05D003101 ORTHO05D003550 3.6e-30 137.5 721 27.3
Atru.chr7.1311 Acer truncatum HOM05D003101 ORTHO05D026231 4.7e-30 137.1 484 29.5
Hund00605 Selenicereus undatus HOM05D003101 ORTHO05D003550 4.7e-30 137.1 602 28.2
DCAR_016225 Daucus carota HOM05D003101 ORTHO05D003550 5.3e-29 133.7 687 31.4
Lsat_1_v5_gn_5_129921 Lactuca sativa HOM05D003101 ORTHO05D003550 3.4e-28 131.0 550 29.6
MD17G1197400 Malus domestica HOM05D003101 ORTHO05D003550 3.4e-28 131.0 316 33.5
SEGI_16629 Sequoiadendron giganteum HOM05D003101 ORTHO05D003550 3.4e-28 131.0 598 26.8
ECA247G3305 Erigeron canadensis HOM05D003101 ORTHO05D003550 4.4e-28 130.6 670 28.4
Peaxi162Scf00207g00946 Petunia axillaris HOM05D003101 ORTHO05D003550 4.9e-27 127.1 575 27.5
HanXRQChr14g0455931 Helianthus annuus HOM05D003101 ORTHO05D003550 5.4e-26 123.6 690 26.1
Peaxi162Scf00015g00341 Petunia axillaris HOM05D003101 ORTHO05D003550 4.3e-23 114.0 522 26.1
Os05g0534600 Oryza sativa ssp. japonica HOM05D003101 ORTHO05D003550 2.1e-22 111.7 631 24.6
THA.LOC104813563 Tarenaya hassleriana HOM05D003101 ORTHO05D003550 6.2e-22 110.2 607 25.7
DCAR_000323 Daucus carota HOM05D003101 ORTHO05D003550 1.4e-21 109.0 564 26.6
AL2G41540 Arabidopsis lyrata HOM05D003101 ORTHO05D003550 2.4e-21 108.2 563 24.9
Zm00001eb161170 Zea mays HOM05D003101 ORTHO05D003550 1.2e-20 105.9 405 27.9
Thecc.09G113600 Theobroma cacao HOM05D003101 ORTHO05D026231 2.6e-20 104.8 538 26.6
SHI24317 Sapria himalayana HOM05D003101 ORTHO05D003550 4.5e-20 104.0 597 25.5
AT1G80000 Arabidopsis thaliana HOM05D003101 ORTHO05D003550 1.3e-19 102.4 582 26.1
Thhalv10018298m.g Eutrema salsugineum HOM05D003101 ORTHO05D003550 4.9e-19 100.5 616 23.2
Carub.0002s2751 Capsella rubella HOM05D003101 ORTHO05D003550 1.4e-18 99.0 666 25.2
THA.LOC104800435 Tarenaya hassleriana HOM05D003101 ORTHO05D003550 2.1e-17 95.1 581 24.1
Cpa.g.sc67.14 Carica papaya HOM05D003101 ORTHO05D003550 1.3e-16 92.4 113 46.0
Zm00001eb293900 Zea mays HOM05D003101 ORTHO05D003550 8.7e-16 89.7 646 25.5
THA.LOC104812516 Tarenaya hassleriana HOM05D003101 ORTHO05D003550 5.6e-15 87.0 609 23.8
Hma1.2p1_0323F.1_g125250 Hydrangea macrophylla HOM05D003101 ORTHO05D003550 7.4e-15 86.7 249 30.1
Actinidia08970 Actinidia chinensis HOM05D003101 ORTHO05D003550 1.6e-14 85.5 155 36.8
MD17G1197300 Malus domestica HOM05D003101 ORTHO05D003550 6.2e-14 83.6 151 35.8
CSS0018769 Camellia sinensis var. sinensis HOM05D003101 ORTHO05D003550 8.1e-14 83.2 76 53.9
BcaC07g38777 Brassica carinata HOM05D003101 ORTHO05D003550 9.0e-13 79.7 270 29.6
AT1G15280 Arabidopsis thaliana HOM05D003101 ORTHO05D003550 1.2e-12 79.3 607 22.9
A08p31660 Brassica napus HOM05D003101 ORTHO05D003550 2.6e-12 78.2 268 29.9
BraA08t35088Z Brassica rapa HOM05D003101 ORTHO05D003550 2.6e-12 78.2 268 29.9
BolC8t49334H Brassica oleracea HOM05D003101 ORTHO05D003550 5.8e-12 77.0 270 29.3
Hma1.2p1_0323F.1_g125260 Hydrangea macrophylla HOM05D003101 ORTHO05D003550 1.3e-11 75.9 173 37.0
BcaB03g13068 Brassica carinata HOM05D003101 ORTHO05D003550 1.7e-11 75.5 271 29.5
arahy.Tifrunner.gnm1.ann1.Q6LVZW Arachis hypogaea HOM05D041787 ORTHO05D031481 2.5e-10 71.6 242 31.4
COL.COLO4_34886 Corchorus olitorius HOM05D003101 ORTHO05D026231 2.5e-10 71.6 515 24.1
Pp3c17_2630 Physcomitrium patens HOM05D003101 ORTHO05D003550 2.5e-10 71.6 131 40.5
arahy.Tifrunner.gnm1.ann1.L766U6 Arachis hypogaea HOM05D041787 ORTHO05D031481 2.7e-09 68.2 242 29.8
C08p17080 Brassica napus HOM05D003101 ORTHO05D003550 6.0e-09 67.0 262 28.6
Mapoly0012s0166 Marchantia polymorpha HOM05D003101 ORTHO05D003550 1.5e-07 62.4 612 25.2
BcaB02g07299 Brassica carinata HOM05D003101 ORTHO05D003550 2.5e-07 61.6 705 21.7
Lsat_1_v5_gn_3_22201 Lactuca sativa HOM05D003101 ORTHO05D003550 9.6e-07 59.7 62 54.8
Lsat_1_v5_gn_6_22701 Lactuca sativa HOM05D003101 ORTHO05D003550 9.6e-07 59.7 62 54.8
Lalb_Chr05g0222681 Lupinus albus HOM05D041787 ORTHO05D031481 1.6e-06 58.9 194 28.4


User provided reference genes

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