Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa002049 Carpinus fangiana HOM05D007289 ORTHO05D009215 6.2e-200 700.7 372 100.0
Haze_16457 Corylus avellana HOM05D007289 ORTHO05D009215 3.4e-150 535.4 564 59.2
CiPaw.02G152300 Carya illinoinensis HOM05D007289 ORTHO05D009215 2.3e-130 469.5 359 69.9
QL05p025382 Quercus lobata HOM05D007289 ORTHO05D009215 2.0e-126 456.4 391 69.8
Dinv30529 Davidia involucrata HOM05D007289 ORTHO05D009215 3.0e-122 442.6 401 64.1
Prupe.3G073900 Prunus persica HOM05D007289 ORTHO05D009215 1.3e-120 437.2 377 63.9
TAR383G0594 Trochodendron aralioides HOM05D007289 ORTHO05D009215 1.1e-116 424.1 401 57.9
RcHm_v2.0_Chr2g0137421 Rosa chinensis HOM05D007289 ORTHO05D009215 2.1e-115 419.9 382 64.1
FvH4_6g30910 Fragaria vesca HOM05D007289 ORTHO05D009215 6.1e-115 418.3 375 64.5
FAN02G0535 Fragaria x ananassa HOM05D007289 ORTHO05D009215 4.0e-114 415.6 376 63.8
CSS0039074 Camellia sinensis var. sinensis HOM05D007289 ORTHO05D009215 5.2e-114 415.2 396 57.1
MD17G1197800 Malus domestica HOM05D007289 ORTHO05D009215 3.4e-113 412.5 391 58.6
Potri.001G178100 Populus trichocarpa HOM05D007289 ORTHO05D009215 7.5e-113 411.4 375 59.5
Ciclev10025766m.g Citrus clementina HOM05D007289 ORTHO05D009215 1.1e-111 407.5 382 59.7
Ca_01106_v3 Cicer arietinum L. HOM05D007289 ORTHO05D009215 2.3e-109 399.8 383 56.4
Manes.04G121300 Manihot esculenta HOM05D007289 ORTHO05D009215 2.9e-109 399.4 383 57.2
Atru.chr1.3224 Acer truncatum HOM05D007289 ORTHO05D009215 5.0e-109 398.7 394 59.1
Glyma.13G360800 Glycine max HOM05D007289 ORTHO05D009215 2.5e-108 396.4 383 55.6
Lalb_Chr14g0373531 Lupinus albus HOM05D007289 ORTHO05D009215 7.3e-108 394.8 370 59.2
Lj9C506T12 Lonicera japonica HOM05D007289 ORTHO05D009215 1.2e-107 394.0 388 55.2
Lj3g0010801 Lotus japonicus HOM05D007289 ORTHO05D009215 1.6e-107 393.7 388 57.0
vmacro18934 Vaccinium macrocarpon HOM05D007289 ORTHO05D009215 1.6e-107 393.7 395 56.7
Phvul.005G172600 Phaseolus vulgaris HOM05D007289 ORTHO05D009215 6.1e-107 391.7 380 55.0
Sabra01G0148500 Salix brachista HOM05D007289 ORTHO05D009215 8.0e-107 391.3 374 57.8
Psat5g299280 Pisum sativum HOM05D007289 ORTHO05D009215 1.0e-106 391.0 385 55.8
Sed0021795 Sechium edule HOM05D007289 ORTHO05D009215 1.0e-106 391.0 380 55.8
VMungo1080G1522 Vigna mungo HOM05D007289 ORTHO05D009215 1.8e-106 390.2 386 55.2
CANSAT56G1700 Cannabis sativa HOM05D007289 ORTHO05D009215 5.2e-106 388.7 395 56.2
CsaV3_7G033000 Cucumis sativus L. HOM05D007289 ORTHO05D009215 6.8e-106 388.3 375 56.0
Gohir.A02G122500 Gossypium hirsutum HOM05D007289 ORTHO05D009215 6.8e-106 388.3 383 57.2
Gorai.002G058300 Gossypium raimondii HOM05D007289 ORTHO05D009215 2.0e-105 386.7 383 56.9
Lalb_Chr22g0351171 Lupinus albus HOM05D007289 ORTHO05D009215 2.9e-104 382.9 377 56.5
TPR.G37243 Trifolium pratense HOM05D007289 ORTHO05D009215 4.9e-104 382.1 383 54.3
Rhsim08G0218600 Rhododendron simsii HOM05D007289 ORTHO05D009215 6.4e-104 381.7 404 56.7
MELO3C023367.2 Cucumis melo HOM05D007289 ORTHO05D009215 8.3e-104 381.3 373 55.2
COL.COLO4_30328 Corchorus olitorius HOM05D007289 ORTHO05D009215 1.8e-103 380.2 380 55.3
Thecc.06G082700 Theobroma cacao HOM05D007289 ORTHO05D009215 5.4e-103 378.6 378 58.5
MBI04_g26647_MAGBIO Magnolia biondii HOM05D007289 ORTHO05D009215 2.7e-102 376.3 373 56.8
TWI75G1369 Tripterygium wilfordii HOM05D007289 ORTHO05D009215 1.3e-101 374.0 372 56.5
Medtr2g102430 Medicago truncatula HOM05D007289 ORTHO05D009215 1.1e-100 370.9 376 54.5
Cc04_g03590 Coffea canephora HOM05D007289 ORTHO05D009215 9.5e-100 367.9 381 53.8
Aqoxy7G01850 Aquilegia oxysepala HOM05D007289 ORTHO05D009215 1.2e-99 367.5 391 51.7
GSVIVG01017153001 Vitis vinifera HOM05D007289 ORTHO05D009215 1.6e-99 367.1 334 59.0
DCAR_016227 Daucus carota HOM05D007289 ORTHO05D009215 1.4e-98 364.0 374 54.8
arahy.Tifrunner.gnm1.ann1.UJ7D22 Arachis hypogaea HOM05D007289 ORTHO05D009215 1.8e-98 363.6 383 52.5
FAN09G0173 Fragaria x ananassa HOM05D007289 ORTHO05D009215 2.3e-98 363.2 357 61.9
PGSC0003DMG400016511 Solanum tuberosum HOM05D007289 ORTHO05D009215 2.3e-98 363.2 378 51.6
arahy.Tifrunner.gnm1.ann1.HRS6MU Arachis hypogaea HOM05D007289 ORTHO05D009215 6.8e-98 361.7 381 52.2
Peaxi162Scf00207g00834 Petunia axillaris HOM05D007289 ORTHO05D009215 7.5e-97 358.2 306 60.1
PGR102G0666 Punica granatum HOM05D007289 ORTHO05D009215 2.2e-96 356.7 373 55.0
PSO782G0119 Papaver somniferum HOM05D007289 ORTHO05D009215 6.4e-96 355.1 373 52.5
AUR62011614 Chenopodium quinoa HOM05D007289 ORTHO05D009215 8.3e-96 354.8 395 50.1
Sc12g0009160 Simmondsia chinensis HOM05D007289 ORTHO05D009215 8.3e-96 354.8 384 52.3
Nitab4.5_0002327g0060 Nicotiana tabacum HOM05D007289 ORTHO05D009215 1.1e-95 354.4 368 53.0
Oeu033497.1 Olea europaea HOM05D007289 ORTHO05D009215 1.4e-95 354.0 311 59.5
CAN.G395.19 Capsicum annuum HOM05D007289 ORTHO05D009215 1.9e-95 353.6 372 53.5
AUR62016430 Chenopodium quinoa HOM05D007289 ORTHO05D009215 1.9e-95 353.6 395 50.4
Aa31LG4G690 Aethionema arabicum HOM05D007289 ORTHO05D009215 4.1e-95 352.4 386 52.8
Sopen06g025060 Solanum pennellii HOM05D007289 ORTHO05D009215 5.4e-95 352.1 378 50.3
Solyc06g066780.3 Solanum lycopersicum HOM05D007289 ORTHO05D009215 9.2e-95 351.3 380 50.0
THA.LOC104808206 Tarenaya hassleriana HOM05D007289 ORTHO05D009215 1.2e-94 350.9 386 53.9
Thhalv10018735m.g Eutrema salsugineum HOM05D007289 ORTHO05D009215 4.6e-94 349.0 375 52.8
Actinidia15825 Actinidia chinensis HOM05D002927 ORTHO05D003841 1.0e-93 347.8 316 60.1
Hund06601 Selenicereus undatus HOM05D007289 ORTHO05D009215 1.3e-93 347.4 391 49.9
CARHR074820 Cardamine hirsuta HOM05D007289 ORTHO05D009215 1.7e-93 347.1 361 53.5
AL2G41080 Arabidopsis lyrata HOM05D007289 ORTHO05D009215 4.3e-92 342.4 361 53.5
AT1G80420 Arabidopsis thaliana HOM05D007289 ORTHO05D009215 5.6e-92 342.0 361 54.0
ECA232G0523 Erigeron canadensis HOM05D007289 ORTHO05D009215 2.1e-91 340.1 358 51.1
Sp5g35390 Schrenkiella parvula HOM05D007289 ORTHO05D009215 4.7e-91 339.0 367 52.9
Os06g0144000 Oryza sativa ssp. japonica HOM05D007289 ORTHO05D009215 6.2e-91 338.6 361 49.0
Lsat_1_v5_gn_4_103480 Lactuca sativa HOM05D007289 ORTHO05D009215 1.8e-90 337.0 378 50.0
C02p37330 Brassica napus HOM05D007289 ORTHO05D009215 2.6e-89 333.2 360 52.2
BcaC03g15968 Brassica carinata HOM05D007289 ORTHO05D009215 4.4e-89 332.4 360 51.9
MSTRG.11091 Avicennia marina HOM05D007289 ORTHO05D009215 7.5e-89 331.6 372 50.5
BolC2t09743H Brassica oleracea HOM05D007289 ORTHO05D009215 7.5e-89 331.6 360 51.7
HanXRQChr16g0501051 Helianthus annuus HOM05D007289 ORTHO05D009215 3.7e-88 329.3 359 50.7
A02p23560 Brassica napus HOM05D007289 ORTHO05D009215 1.1e-87 327.8 362 51.7
BraA02t07349Z Brassica rapa HOM05D007289 ORTHO05D009215 1.1e-87 327.8 362 51.7
Nn8g39279 Nelumbo nucifera HOM05D007289 ORTHO05D009215 1.9e-87 327.0 317 56.2
Migut.I00845 Erythranthe guttata HOM05D007289 ORTHO05D009215 4.1e-87 325.9 365 50.7
BcaB05g25270 Brassica carinata HOM05D002927 ORTHO05D003841 2.1e-86 323.6 361 55.7
Carub.0002s2715 Capsella rubella HOM05D007289 ORTHO05D009215 1.3e-85 320.9 372 50.3
Duzib235G0864 Durio zibethinus HOM05D007289 ORTHO05D009215 2.1e-83 313.5 375 50.9
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 9.9e-81 304.7 307 53.7
ATR0037G063 Amborella trichopoda HOM05D007289 ORTHO05D009215 9.2e-79 298.1 320 51.6
EL10Ac9g21988 Beta vulgaris HOM05D007289 ORTHO05D009215 1.6e-78 297.4 460 40.7
Cpa.g.sc10.164 Carica papaya HOM05D007289 ORTHO05D009215 3.0e-77 293.1 288 55.2
PSO339G0085 Papaver somniferum HOM05D007289 ORTHO05D009215 1.5e-76 290.8 274 55.1
SalBow2G1977 Salvia bowleyana HOM05D007289 ORTHO05D009215 4.9e-72 275.8 377 44.8
HPP92_000676 Vanilla planifolia HOM05D007289 ORTHO05D009215 3.4e-65 253.1 275 50.2
SEGI_14605 Sequoiadendron giganteum HOM05D007289 ORTHO05D009215 9.9e-65 251.5 314 44.6
Glyma.15G013100 Glycine max HOM05D007289 ORTHO05D009215 4.3e-60 236.1 243 50.6
Eucgr.F03006 Eucalyptus grandis HOM05D007289 ORTHO05D009215 4.2e-55 219.5 226 53.1
Gohir.D03G073900 Gossypium hirsutum HOM05D007289 ORTHO05D009215 2.1e-54 217.2 195 61.0
FAN05G4017 Fragaria x ananassa HOM05D007289 ORTHO05D009215 7.4e-52 208.8 185 62.2
Pp3c15_20480 Physcomitrium patens HOM05D007289 ORTHO05D009215 1.6e-51 207.6 307 38.1
ClCG09G002310 Citrullus lanatus HOM05D007289 ORTHO05D009215 2.8e-51 206.8 171 60.2
FAN05G4871 Fragaria x ananassa HOM05D007289 ORTHO05D009215 6.2e-51 205.7 154 76.6
Mapoly0044s0047 Marchantia polymorpha HOM05D007289 ORTHO05D009215 6.5e-48 195.7 317 36.3
TWI12G0812 Tripterygium wilfordii HOM05D007289 ORTHO05D009215 1.1e-47 194.9 197 55.8
Nitab4.5_0021849g0010 Nicotiana tabacum HOM05D007289 ORTHO05D009215 3.9e-45 186.4 203 50.7
Zm00001eb377280 Zea mays HOM05D007289 ORTHO05D009215 2.1e-38 164.1 187 46.0
unitig_21.g20513 Utricularia gibba HOM05D007289 ORTHO05D009215 3.6e-38 163.3 375 34.7
SEGI_13111 Sequoiadendron giganteum HOM05D007289 ORTHO05D009215 2.3e-37 160.6 185 48.6
ClCG09G002320 Citrullus lanatus HOM05D007289 ORTHO05D009215 1.7e-35 154.5 246 41.5
CBR_g23739 Chara braunii HOM05D007289 ORTHO05D009215 3.6e-30 136.7 109 55.0
Lj2P1136T43 Lonicera japonica HOM05D007289 ORTHO05D009215 3.1e-26 123.6 113 54.0
Hma1.2p1_0845F.1_g227540 Hydrangea macrophylla HOM05D007289 ORTHO05D009215 5.3e-26 122.9 73 74.0
Ah.01g011120 Amaranthus hybridus HOM05D007289 ORTHO05D009215 6.1e-22 109.4 143 44.1
Pp3c21_18730 Physcomitrium patens HOM05D007289 ORTHO05D009215 2.8e-11 73.9 110 38.2
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 6.1e-06 56.2 81 34.6


User provided reference genes

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