Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001024 Carpinus fangiana HOM05D007300 ORTHO05D009301 0.0e+00 1326.2 672 100.0
Haze_05485 Corylus avellana HOM05D007300 ORTHO05D009301 0.0e+00 1203.3 778 83.2
CiPaw.10G096200 Carya illinoinensis HOM05D007300 ORTHO05D009301 5.6e-308 1060.4 672 80.2
QL05p060322 Quercus lobata HOM05D007300 ORTHO05D009301 2.4e-295 1018.5 672 78.7
Prupe.4G073700 Prunus persica HOM05D007300 ORTHO05D009301 3.9e-245 851.7 675 66.8
RcHm_v2.0_Chr5g0012901 Rosa chinensis HOM05D007300 ORTHO05D009301 2.4e-242 842.4 672 66.8
MD05G1291800 Malus domestica HOM05D007300 ORTHO05D009301 1.2e-241 840.1 697 64.7
FAN21G2574 Fragaria x ananassa HOM05D007300 ORTHO05D009301 2.5e-239 832.4 672 66.4
FvH4_3g06410 Fragaria vesca HOM05D007300 ORTHO05D009301 6.1e-238 827.8 672 65.9
Dinv32299 Davidia involucrata HOM05D007300 ORTHO05D009301 9.0e-234 813.9 665 66.0
Thecc.06G157700 Theobroma cacao HOM05D007300 ORTHO05D009301 9.0e-234 813.9 671 64.4
GSVIVG01021378001 Vitis vinifera HOM05D007300 ORTHO05D009301 7.7e-233 810.8 672 65.0
TWI73G0852 Tripterygium wilfordii HOM05D007300 ORTHO05D009301 5.0e-232 808.1 673 63.2
FAN11G2841 Fragaria x ananassa HOM05D007300 ORTHO05D009301 8.8e-229 797.3 733 60.3
CANSAT35G1474 Cannabis sativa HOM05D007300 ORTHO05D009301 2.8e-227 792.3 678 64.0
Potri.001G353800 Populus trichocarpa HOM05D007300 ORTHO05D009301 3.1e-226 788.9 685 63.2
Gorai.011G040700 Gossypium raimondii HOM05D007300 ORTHO05D009301 4.1e-226 788.5 672 62.6
Gohir.D10G038600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 7.7e-225 784.3 672 62.5
TAR627G1006 Trochodendron aralioides HOM05D007300 ORTHO05D009301 1.0e-224 783.9 673 62.4
ClCG03G007190 Citrullus lanatus HOM05D007300 ORTHO05D009301 4.7e-222 775.0 672 60.4
Ciclev10014510m.g Citrus clementina HOM05D007300 ORTHO05D009301 1.4e-221 773.5 679 62.4
Gohir.A10G037600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 5.2e-221 771.5 672 61.8
CSS0020184 Camellia sinensis var. sinensis HOM05D007300 ORTHO05D009301 1.1e-220 770.4 671 61.8
Glyma.08G121900 Glycine max HOM05D007300 ORTHO05D009301 7.7e-217 757.7 668 60.6
Atru.chr10.1398 Acer truncatum HOM05D007300 ORTHO05D009301 6.5e-216 754.6 570 69.1
Actinidia19486 Actinidia chinensis HOM05D007300 ORTHO05D009301 6.5e-216 754.6 670 61.3
COL.COLO4_22798 Corchorus olitorius HOM05D007300 ORTHO05D009301 9.4e-215 750.7 673 61.5
Glyma.05G164500 Glycine max HOM05D007300 ORTHO05D009301 2.7e-214 749.2 683 59.6
Atru.chr10.1407 Acer truncatum HOM05D007300 ORTHO05D009301 1.4e-213 746.9 570 68.6
Sabra16G0232700 Salix brachista HOM05D007300 ORTHO05D009301 3.0e-213 745.7 628 64.0
Medtr8g088030 Medicago truncatula HOM05D007300 ORTHO05D009301 1.1e-210 737.3 592 63.2
CsaV3_1G032780 Cucumis sativus L. HOM05D007300 ORTHO05D009301 3.1e-210 735.7 669 58.4
Ca_17871_v3 Cicer arietinum L. HOM05D007300 ORTHO05D009301 1.1e-207 727.2 592 62.8
Manes.17G064900 Manihot esculenta HOM05D007300 ORTHO05D009301 1.9e-207 726.5 665 59.8
Lj4g0024386 Lotus japonicus HOM05D007300 ORTHO05D009301 1.6e-206 723.4 612 61.8
Lalb_Chr13g0295471 Lupinus albus HOM05D007300 ORTHO05D009301 2.7e-206 722.6 590 63.4
Phvul.002G244500 Phaseolus vulgaris HOM05D007300 ORTHO05D009301 4.7e-206 721.8 592 63.3
Cpa.g.sc17.110 Carica papaya HOM05D007300 ORTHO05D009301 1.0e-205 720.7 616 60.9
TPR.G6793 Trifolium pratense HOM05D007300 ORTHO05D009301 4.0e-205 718.8 595 61.7
Eucgr.D00343 Eucalyptus grandis HOM05D007300 ORTHO05D009301 5.2e-205 718.4 590 62.5
Nitab4.5_0003714g0040 Nicotiana tabacum HOM05D007300 ORTHO05D009301 6.8e-205 718.0 663 58.8
Duzib235G1110 Durio zibethinus HOM05D007300 ORTHO05D009301 2.6e-204 716.1 671 58.3
arahy.Tifrunner.gnm1.ann1.D64P8M Arachis hypogaea HOM05D007300 ORTHO05D009301 3.4e-204 715.7 626 61.8
Nitab4.5_0001283g0060 Nicotiana tabacum HOM05D007300 ORTHO05D009301 9.8e-204 714.1 662 59.1
arahy.Tifrunner.gnm1.ann1.FQ35JE Arachis hypogaea HOM05D007300 ORTHO05D009301 1.7e-203 713.4 638 60.7
Peaxi162Scf00649g00027 Petunia axillaris HOM05D007300 ORTHO05D009301 3.5e-201 705.7 605 61.0
Oeu021524.1 Olea europaea HOM05D007300 ORTHO05D009301 9.5e-199 697.6 618 60.2
VMungo0251G3397 Vigna mungo HOM05D007300 ORTHO05D009301 5.7e-196 688.3 580 63.4
Psat7g066760 Pisum sativum HOM05D007300 ORTHO05D009301 8.3e-195 684.5 625 56.0
THA.LOC104827733 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 1.8e-194 683.3 678 54.3
MBI10_g02388_MAGBIO Magnolia biondii HOM05D007300 ORTHO05D009301 1.2e-193 680.6 614 59.0
PGSC0003DMG400003073 Solanum tuberosum HOM05D007300 ORTHO05D009301 4.5e-193 678.7 669 56.2
CAN.G257.51 Capsicum annuum HOM05D007300 ORTHO05D009301 1.1e-191 674.1 669 55.5
Lj1C1181T32 Lonicera japonica HOM05D007300 ORTHO05D009301 2.8e-190 669.5 675 57.6
Solyc02g071280.3 Solanum lycopersicum HOM05D007300 ORTHO05D009301 2.8e-190 669.5 670 55.1
Aqoxy1G01857 Aquilegia oxysepala HOM05D007300 ORTHO05D009301 4.7e-190 668.7 665 54.7
Nn3g20905 Nelumbo nucifera HOM05D007300 ORTHO05D009301 2.0e-188 663.3 629 58.2
Sopen02g020340 Solanum pennellii HOM05D007300 ORTHO05D009301 3.4e-188 662.5 670 55.1
Lsat_1_v5_gn_7_31040 Lactuca sativa HOM05D007300 ORTHO05D009301 9.8e-188 661.0 668 54.5
Thhalv10000812m.g Eutrema salsugineum HOM05D007300 ORTHO05D009301 4.9e-187 658.7 613 56.4
DCAR_027959 Daucus carota HOM05D007300 ORTHO05D009301 6.4e-187 658.3 606 58.3
AT5G46420 Arabidopsis thaliana HOM05D007300 ORTHO05D009301 1.8e-186 656.8 678 53.1
Aa31LG9G6430 Aethionema arabicum HOM05D007300 ORTHO05D009301 7.0e-186 654.8 620 56.0
Carub.0008s0147 Capsella rubella HOM05D007300 ORTHO05D009301 9.2e-186 654.4 676 52.2
Sp2g11270 Schrenkiella parvula HOM05D007300 ORTHO05D009301 1.0e-184 651.0 678 52.2
BolC7t43517H Brassica oleracea HOM05D007300 ORTHO05D009301 3.0e-184 649.4 674 52.7
C07p29650 Brassica napus HOM05D007300 ORTHO05D009301 3.9e-184 649.0 674 52.5
A06p45940 Brassica napus HOM05D007300 ORTHO05D009301 1.2e-182 644.0 679 52.7
AL8G11990 Arabidopsis lyrata HOM05D007300 ORTHO05D009301 2.1e-182 643.3 679 51.8
PGR044G1273 Punica granatum HOM05D007300 ORTHO05D009301 3.6e-182 642.5 571 58.3
CARHR175340 Cardamine hirsuta HOM05D007300 ORTHO05D009301 2.3e-181 639.8 677 52.6
ECA236G2360 Erigeron canadensis HOM05D007300 ORTHO05D009301 2.0e-180 636.7 675 51.7
PSO541G4163 Papaver somniferum HOM05D007300 ORTHO05D009301 2.0e-180 636.7 616 55.4
HanXRQChr04g0119571 Helianthus annuus HOM05D007300 ORTHO05D009301 4.4e-180 635.6 662 53.8
BraA06t27457Z Brassica rapa HOM05D007300 ORTHO05D009301 9.8e-180 634.4 666 52.7
Migut.M00959 Erythranthe guttata HOM05D007300 ORTHO05D009301 8.6e-176 621.3 686 52.0
Sc05g0006590 Simmondsia chinensis HOM05D007300 ORTHO05D009301 5.6e-175 618.6 678 51.3
SalBow8G1735 Salvia bowleyana HOM05D007300 ORTHO05D009301 9.5e-175 617.8 607 56.0
SGA_v2.0_scaffold1G00132 Striga asiatica HOM05D007300 ORTHO05D009301 1.2e-174 617.5 677 51.3
AUR62027555 Chenopodium quinoa HOM05D007300 ORTHO05D009301 3.5e-169 599.4 611 53.8
FAN16G1565 Fragaria x ananassa HOM05D007300 ORTHO05D009301 4.6e-169 599.0 485 66.4
AUR62035801 Chenopodium quinoa HOM05D007300 ORTHO05D009301 1.2e-164 584.3 611 52.5
ATR1153G036 Amborella trichopoda HOM05D007300 ORTHO05D009301 2.9e-147 526.6 627 46.1
HPP92_023296 Vanilla planifolia HOM05D007300 ORTHO05D009301 2.5e-143 513.5 599 47.9
EL10Ac8g19794 Beta vulgaris HOM05D007300 ORTHO05D009301 3.4e-140 503.1 609 47.5
Sed0024786 Sechium edule HOM05D007300 ORTHO05D009301 3.4e-132 476.5 459 57.3
unitig_92.g28150 Utricularia gibba HOM05D007300 ORTHO05D009301 1.1e-111 408.3 534 45.7
PSO675G3105 Papaver somniferum HOM05D007300 ORTHO05D009301 1.7e-107 394.4 359 59.1
MELO3C002704.2 Cucumis melo HOM05D007300 ORTHO05D009301 5.5e-106 389.4 360 56.4
HPP92_023271 Vanilla planifolia HOM05D007300 ORTHO05D009301 4.4e-103 379.8 597 38.9
SEGI_38698 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 5.5e-98 362.8 535 37.8
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 4.1e-85 320.1 670 30.3
CDE06G2820 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 2.8e-78 297.4 349 49.0
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 3.7e-78 297.0 538 34.6
Zm00001eb296050 Zea mays HOM05D007300 ORTHO05D009301 2.8e-73 280.8 335 44.8
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 1.4e-72 278.5 531 33.9
Os05g0566300 Oryza sativa ssp. japonica HOM05D007300 ORTHO05D009301 8.9e-56 222.6 208 50.0
Gorai.004G093400 Gossypium raimondii HOM05D007300 ORTHO05D009301 4.6e-44 183.7 168 58.3
Gohir.D08G088700 Gossypium hirsutum HOM05D007300 ORTHO05D009301 1.7e-43 181.8 168 58.3
Zm00001eb349440 Zea mays HOM05D007300 ORTHO05D009301 1.4e-40 172.2 176 50.0
SEGI_17563 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 7.8e-36 156.4 116 58.6
MCO05G669 Micromonas commoda HOM05D007300 ORTHO05D009301 4.3e-26 124.0 228 32.9
Pp3c4_17200 Physcomitrium patens HOM05D003927 ORTHO05D004905 6.9e-24 116.7 437 23.6
CDE06G1765 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 2.0e-23 115.2 153 41.8
Cre03.g191950 Chlamydomonas reinhardtii HOM05D007300 ORTHO05D009301 2.1e-20 105.1 212 32.1
Zm00001eb184690 Zea mays HOM05D007300 ORTHO05D009301 5.6e-18 97.1 81 50.6
THA.LOC104798460 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 6.9e-16 90.1 127 41.7
Cfa023099 Carpinus fangiana HOM05D003927 ORTHO05D004905 2.2e-09 68.6 342 20.8
MCO02G083 Micromonas commoda HOM05D003927 ORTHO05D004905 2.4e-08 65.1 302 23.2
DCAR_003771 Daucus carota HOM05D003927 ORTHO05D004905 5.3e-08 63.9 241 22.8
CDE12G0287 Ceratophyllum demersum HOM05D003927 ORTHO05D004905 3.4e-07 61.2 205 23.9
Cc00_g22880 Coffea canephora HOM05D003927 ORTHO05D004905 3.4e-07 61.2 272 22.8
CANSAT64G2986 Cannabis sativa HOM05D003927 ORTHO05D004905 4.5e-07 60.8 245 22.0
Oeu058944.1 Olea europaea HOM05D003927 ORTHO05D004905 4.5e-07 60.8 242 21.5
TAR625G0767 Trochodendron aralioides HOM05D003927 ORTHO05D004905 4.5e-07 60.8 269 21.6
Atru.chr10.419 Acer truncatum HOM05D003927 ORTHO05D004905 5.9e-07 60.5 278 20.1
Duzib248G0257 Durio zibethinus HOM05D003927 ORTHO05D004905 5.9e-07 60.5 238 22.3
Sed0013384 Sechium edule HOM05D003927 ORTHO05D004905 7.7e-07 60.1 266 20.7
CDE01G0678 Ceratophyllum demersum HOM05D000154 ORTHO05D004905 1.0e-06 59.7 205 23.4
arahy.Tifrunner.gnm1.ann1.YAS9I4 Arachis hypogaea HOM05D003927 ORTHO05D004905 2.9e-06 58.2 202 23.3
COL.COLO4_17634 Corchorus olitorius HOM05D003927 ORTHO05D004905 2.9e-06 58.2 269 20.4
RcHm_v2.0_Chr5g0020631 Rosa chinensis HOM05D003927 ORTHO05D004905 3.8e-06 57.8 241 21.6
SGA_v2.0_scaffold298G47698 Striga asiatica HOM05D003927 ORTHO05D004905 5.0e-06 57.4 218 21.6
Thecc.02G005900 Theobroma cacao HOM05D003927 ORTHO05D004905 6.5e-06 57.0 244 22.1


User provided reference genes

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