Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 2.2e-246 855.5 534 100.0
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 7.1e-173 611.3 537 68.2
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 2.5e-170 602.8 403 80.6
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 9.6e-170 600.9 406 78.8
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 1.6e-169 600.1 404 80.9
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 3.4e-167 592.4 400 80.2
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 5.8e-167 591.7 538 66.0
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 3.8e-166 589.0 404 77.7
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 4.9e-166 588.6 537 69.5
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 6.4e-166 588.2 401 78.3
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 1.9e-165 586.6 404 77.7
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 2.4e-165 586.3 539 70.1
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 3.2e-165 585.9 537 66.1
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 7.1e-165 584.7 411 77.4
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 9.3e-165 584.3 403 77.7
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 2.1e-164 583.2 405 78.3
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 2.7e-164 582.8 407 76.9
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 1.7e-163 580.1 413 76.3
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 3.0e-163 579.3 397 78.6
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 3.9e-163 578.9 397 78.3
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 7.3e-162 574.7 403 77.9
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 7.3e-162 574.7 519 65.3
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 3.6e-161 572.4 445 70.1
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 4.5e-159 565.5 404 76.7
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 4.5e-159 565.5 403 75.9
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 7.6e-159 564.7 399 75.9
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 3.8e-158 562.4 411 74.0
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 3.8e-158 562.4 443 70.7
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 1.4e-157 560.5 536 62.7
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 4.2e-157 558.9 542 62.5
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 5.4e-157 558.5 445 71.7
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 1.6e-156 557.0 537 62.2
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 2.7e-156 556.2 536 61.2
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 3.5e-156 555.8 410 71.7
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 3.9e-155 552.4 445 71.7
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 3.9e-155 552.4 411 73.5
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 1.5e-154 550.4 445 71.7
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 1.9e-154 550.1 420 72.1
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 5.6e-154 548.5 410 72.0
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 9.6e-154 547.7 445 71.2
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 4.8e-153 545.4 404 72.5
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 6.2e-153 545.0 402 72.4
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 4.0e-152 542.3 406 72.9
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 4.0e-152 542.3 539 61.0
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 5.3e-152 542.0 454 64.1
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 9.0e-152 541.2 450 68.4
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 2.6e-151 539.7 398 73.1
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 9.9e-151 537.7 404 73.3
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 2.2e-150 536.6 530 64.5
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 2.9e-150 536.2 452 70.1
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 5.5e-149 531.9 401 72.1
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 7.1e-149 531.6 535 58.9
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 1.2e-148 530.8 445 65.6
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 1.8e-147 526.9 443 65.5
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 3.9e-147 525.8 379 74.7
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 6.7e-147 525.0 500 58.4
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 6.7e-147 525.0 442 67.2
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 1.5e-146 523.9 443 66.8
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 2.5e-146 523.1 498 56.8
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 6.9e-144 515.0 395 70.4
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 3.4e-143 512.7 452 63.5
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 4.5e-143 512.3 443 68.8
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 5.8e-143 511.9 390 74.4
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 1.0e-142 511.1 399 71.2
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 1.0e-142 511.1 402 71.1
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 1.7e-142 510.4 400 70.8
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 2.2e-142 510.0 534 56.9
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 3.8e-142 509.2 450 66.7
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 3.8e-142 509.2 446 64.6
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 3.8e-142 509.2 401 69.3
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 5.5e-141 505.4 536 57.1
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 7.1e-141 505.0 536 57.1
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 1.6e-140 503.8 395 69.6
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 2.1e-140 503.4 536 56.7
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 4.6e-140 502.3 401 67.6
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 4.6e-140 502.3 400 70.0
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 6.0e-140 501.9 445 64.9
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 8.7e-139 498.0 402 68.4
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 2.4e-136 490.0 490 61.2
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 3.1e-136 489.6 403 66.3
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 3.1e-136 489.6 398 68.1
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.5e-135 487.3 407 62.4
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 4.5e-135 485.7 403 66.7
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 3.7e-129 466.1 409 61.6
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 8.2e-129 464.9 373 70.2
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 4.1e-128 462.6 443 60.0
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 9.1e-128 461.5 444 54.7
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 1.2e-127 461.1 419 63.7
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 3.4e-127 459.5 443 58.0
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.0e-126 458.0 433 58.2
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 1.4e-125 454.1 392 62.8
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 1.9e-125 453.8 441 59.0
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 4.2e-125 452.6 383 64.2
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 5.5e-125 452.2 381 62.7
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 6.1e-124 448.7 382 64.9
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 7.9e-124 448.4 382 65.2
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 1.0e-123 448.0 444 53.2
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 1.0e-123 448.0 382 63.1
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 2.3e-123 446.8 384 64.6
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 8.8e-123 444.9 382 64.7
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 1.1e-122 444.5 382 64.7
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 1.1e-122 444.5 401 62.1
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 1.3e-121 441.0 396 62.6
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 2.4e-120 436.8 382 62.6
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 5.3e-120 435.6 448 59.4
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 7.0e-120 435.3 388 61.6
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 9.1e-120 434.9 383 62.7
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 1.5e-119 434.1 383 62.4
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 2.0e-119 433.7 444 56.8
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 4.5e-119 432.6 415 54.7
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 2.1e-116 423.7 411 58.2
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 1.2e-111 407.9 412 58.0
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 4.0e-107 392.9 429 57.1
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 3.1e-104 383.3 353 64.9
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 1.7e-102 377.5 463 51.4
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 2.1e-100 370.5 468 50.2
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 1.4e-83 314.7 255 60.8
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 1.2e-82 311.6 409 50.6
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 1.3e-81 308.1 467 45.8
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 9.5e-77 292.0 185 75.7
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 1.1e-67 261.9 301 54.5
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 5.6e-61 239.6 480 33.3
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 1.5e-58 231.5 471 39.9
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 6.2e-52 209.5 464 31.7
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 4.0e-51 206.8 223 50.2
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 9.9e-50 202.2 275 40.4
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 4.5e-42 176.8 248 39.9
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 4.6e-23 113.6 359 27.6
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 6.1e-23 113.2 133 46.6
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 1.2e-18 99.0 85 57.6
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 5.9e-18 96.7 84 57.1
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 1.0e-17 95.9 93 52.7
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 2.7e-15 87.8 162 35.8
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 1.0e-14 85.9 170 37.1
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 2.2e-12 78.2 133 36.8
vmacro19271 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 8.5e-09 66.2 263 23.2
vmacro23261 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 8.5e-09 66.2 263 23.2
Nitab4.5_0002059g0020 Nicotiana tabacum HOM05D000453 ORTHO05D000387 3.2e-08 64.3 118 35.6
Ah.08g218380 Amaranthus hybridus HOM05D000464 ORTHO05D006292 9.4e-08 62.8 305 30.2
AUR62022080 Chenopodium quinoa HOM05D000464 ORTHO05D006292 1.6e-07 62.0 308 28.2
Rhsim12G0161600 Rhododendron simsii HOM05D000453 ORTHO05D000387 1.6e-07 62.0 118 37.3
AUR62001250 Chenopodium quinoa HOM05D000464 ORTHO05D006292 2.7e-07 61.2 308 28.6
Hund05615 Selenicereus undatus HOM05D000464 ORTHO05D006292 2.7e-07 61.2 306 29.7
Lsat_1_v5_gn_6_115620 Lactuca sativa HOM05D002332 ORTHO05D002509 7.9e-07 59.7 117 29.9
EL10Ac7g18034 Beta vulgaris HOM05D000464 ORTHO05D006292 1.4e-06 58.9 308 29.5
Lj6g0019602 Lotus japonicus HOM05D000526 ORTHO05D000956 1.8e-06 58.5 127 33.9
Cfa023113 Carpinus fangiana HOM05D005323 ORTHO05D017328 2.3e-06 58.2 120 25.8
Cc04_g13580 Coffea canephora HOM05D000453 ORTHO05D000387 6.7e-06 56.6 123 35.0
Cpa.g.sc77.59 Carica papaya HOM05D002332 ORTHO05D002509 8.8e-06 56.2 83 36.1


User provided reference genes

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