Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 0.0e+00 1245.0 630 100.0
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 3.7e-229 798.5 636 66.0
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 5.2e-223 778.1 633 66.0
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 4.1e-220 768.5 655 64.9
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 8.5e-218 760.8 595 66.7
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 3.0e-215 752.3 614 64.3
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 7.5e-214 747.7 635 64.4
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.8e-212 743.0 604 65.4
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 7.0e-212 741.1 630 64.6
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 1.2e-211 740.3 632 63.6
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.2e-211 740.3 598 65.7
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 1.6e-211 740.0 643 64.1
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 1.3e-210 736.9 617 63.2
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 7.2e-209 731.1 632 62.2
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 9.4e-209 730.7 630 61.9
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 6.1e-208 728.0 642 61.7
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 8.0e-208 727.6 628 61.9
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 1.0e-207 727.2 638 61.6
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 6.8e-207 724.5 634 62.1
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 1.2e-206 723.8 612 62.4
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.5e-206 723.4 634 62.0
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.3e-205 720.3 627 62.0
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 1.7e-205 719.9 611 62.2
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 2.2e-205 719.5 631 61.0
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 3.7e-205 718.8 641 59.8
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 4.9e-205 718.4 604 62.7
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 6.3e-205 718.0 630 60.5
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 8.3e-205 717.6 630 61.1
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 1.4e-204 716.8 638 59.6
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 1.6e-203 713.4 631 60.2
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 1.3e-202 710.3 635 60.0
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 2.3e-202 709.5 633 60.7
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 5.0e-202 708.4 639 62.0
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 4.2e-201 705.3 639 59.5
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 9.5e-201 704.1 638 59.9
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 2.1e-200 703.0 630 60.2
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 8.0e-200 701.0 635 60.6
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 8.0e-200 701.0 634 59.9
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 8.0e-200 701.0 630 60.5
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 9.8e-198 694.1 625 62.2
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 3.7e-197 692.2 626 59.3
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 1.8e-196 689.9 634 58.4
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 4.1e-196 688.7 632 59.7
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 4.6e-195 685.3 628 57.3
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.3e-194 683.7 631 59.1
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 1.7e-194 683.3 627 59.0
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 2.9e-194 682.6 638 58.3
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 3.9e-194 682.2 660 58.9
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 6.6e-194 681.4 622 59.5
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 1.9e-193 679.9 654 59.0
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 1.9e-193 679.9 647 58.4
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 4.3e-193 678.7 632 58.7
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 7.3e-193 677.9 631 60.2
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 2.8e-192 676.0 635 59.2
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 6.2e-192 674.9 630 59.7
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 1.4e-191 673.7 632 59.7
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.8e-191 673.3 631 58.6
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 3.1e-191 672.5 621 58.8
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.2e-190 670.6 624 58.7
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.2e-190 670.6 639 58.7
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 7.5e-190 667.9 631 58.3
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 9.8e-190 667.5 630 58.1
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.7e-189 666.8 630 57.3
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.7e-189 665.6 631 57.8
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 4.9e-189 665.2 635 57.6
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 4.9e-189 665.2 628 57.0
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 9.2e-188 661.0 628 55.7
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 1.0e-186 657.5 632 59.0
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 1.7e-186 656.8 628 59.2
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 1.7e-186 656.8 638 58.6
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 3.9e-186 655.6 644 55.1
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 5.0e-186 655.2 634 56.3
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 6.6e-186 654.8 630 55.2
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 7.3e-185 651.4 624 56.6
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 7.3e-185 651.4 635 57.8
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 9.5e-185 651.0 644 57.8
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 3.6e-184 649.0 626 56.5
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 3.6e-184 649.0 626 56.5
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 1.8e-183 646.7 642 57.6
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.2e-182 644.0 633 56.4
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 1.5e-182 643.7 631 55.0
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 1.3e-181 640.6 630 57.5
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 2.2e-181 639.8 602 56.0
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 6.4e-181 638.3 635 55.3
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 1.2e-179 634.0 633 55.3
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 1.2e-179 634.0 586 57.2
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 4.6e-179 632.1 636 54.1
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 7.8e-179 631.3 630 55.4
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 5.6e-177 625.2 633 54.5
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 5.6e-177 625.2 631 54.5
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 1.2e-176 624.0 633 55.3
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 2.8e-176 622.9 634 54.1
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 4.7e-176 622.1 637 54.9
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 8.1e-176 621.3 633 55.0
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 8.1e-176 621.3 633 55.0
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 1.8e-175 620.2 614 56.7
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 3.1e-175 619.4 584 56.8
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 8.9e-175 617.8 629 54.1
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 2.0e-174 616.7 629 53.9
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 8.4e-173 611.3 630 54.6
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 7.3e-169 598.2 560 58.2
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 4.2e-164 582.4 641 53.0
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 1.7e-162 577.0 523 59.3
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 7.3e-161 571.6 644 51.1
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 2.1e-160 570.1 625 51.8
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 4.8e-160 568.9 626 50.8
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 2.4e-156 556.6 605 53.7
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 8.1e-152 541.6 547 56.3
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 2.6e-150 536.6 597 52.1
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 2.1e-147 526.9 642 47.0
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 3.1e-143 513.1 493 58.4
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 4.0e-143 512.7 552 52.9
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 4.5e-142 509.2 538 52.0
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 8.4e-141 505.0 595 48.2
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 1.1e-140 504.6 628 46.8
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 7.4e-137 491.9 640 45.9
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 2.1e-123 447.2 493 54.2
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 6.7e-122 442.2 521 50.3
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 5.1e-114 416.0 530 45.8
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 1.4e-111 407.9 444 53.4
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 2.4e-111 407.1 340 63.5
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 8.5e-109 398.7 625 39.8
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 3.0e-106 390.2 407 54.5
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 2.2e-101 374.0 671 38.3
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 4.2e-100 369.8 434 49.3
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 5.9e-94 349.4 535 41.5
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 1.7e-85 321.2 243 64.6
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 2.5e-84 317.4 611 36.7
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.8e-79 301.2 454 41.6
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 9.2e-79 298.9 249 65.1
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 8.6e-77 292.4 360 48.6
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 8.6e-77 292.4 360 48.6
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 4.4e-73 280.0 566 37.6
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 1.2e-70 271.9 242 60.3
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 4.6e-70 270.0 769 29.4
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 3.9e-61 240.4 148 72.3
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 7.3e-60 236.1 336 43.5
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 4.7e-59 233.4 444 37.2
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 2.9e-56 224.2 444 36.7
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 5.4e-55 219.9 201 55.2
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 2.5e-44 184.5 585 30.1
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 2.4e-42 177.9 587 28.3
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 6.9e-42 176.4 159 59.7
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 1.1e-39 169.1 350 38.9
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.8e-37 161.8 533 28.7
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 5.3e-34 150.2 191 45.0
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 4.3e-28 130.6 253 37.5
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 3.2e-23 114.4 96 58.3
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 7.9e-22 109.8 240 36.7
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 3.0e-21 107.8 60 83.3
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 3.9e-13 80.9 89 50.6
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 4.1e-10 70.9 40 80.0
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 1.5e-09 68.9 63 57.1
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 2.6e-09 68.2 105 44.8
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 4.5e-09 67.4 43 81.4


User provided reference genes

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