Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g21100 Coffea canephora HOM05D003070 ORTHO05D003567 2.8e-25 117.9 61 100.0
Cc07_g21150 Coffea canephora HOM05D003070 ORTHO05D003567 7.6e-23 109.8 61 93.4
Cc07_g21140 Coffea canephora HOM05D003070 ORTHO05D003567 1.9e-21 105.1 61 88.5
Actinidia28603 Actinidia chinensis HOM05D003070 ORTHO05D003567 7.2e-21 103.2 60 85.0
Potri.005G251100 Populus trichocarpa HOM05D003070 ORTHO05D003567 2.7e-20 101.3 61 82.0
PGR031G0751 Punica granatum HOM05D003070 ORTHO05D003567 3.6e-20 100.9 61 85.2
Sabra05G0194200 Salix brachista HOM05D003070 ORTHO05D003567 3.6e-20 100.9 61 82.0
Sabra05G0194500 Salix brachista HOM05D003070 ORTHO05D003567 3.6e-20 100.9 61 82.0
Potri.002G010200 Populus trichocarpa HOM05D003070 ORTHO05D003567 6.1e-20 100.1 61 82.0
Sabra02G0007600 Salix brachista HOM05D003070 ORTHO05D003567 6.1e-20 100.1 61 82.0
TWI12G0703 Tripterygium wilfordii HOM05D003070 ORTHO05D003567 1.0e-19 99.4 61 80.3
Actinidia17044 Actinidia chinensis HOM05D003070 ORTHO05D003567 1.3e-19 99.0 61 83.6
CSS0043026 Camellia sinensis var. sinensis HOM05D003070 ORTHO05D003567 3.9e-19 97.4 61 80.3
DCAR_009533 Daucus carota HOM05D003070 ORTHO05D003567 3.9e-19 97.4 61 80.3
Manes.05G133600 Manihot esculenta HOM05D003070 ORTHO05D003567 1.5e-18 95.5 61 82.0
Manes.05G133700 Manihot esculenta HOM05D003070 ORTHO05D003567 1.5e-18 95.5 61 82.0
TWI56G1280 Tripterygium wilfordii HOM05D003070 ORTHO05D003567 1.5e-18 95.5 61 78.7
AUR62012923 Chenopodium quinoa HOM05D003070 ORTHO05D003567 1.9e-18 95.1 61 80.3
PSO675G2974 Papaver somniferum HOM05D003070 ORTHO05D003567 2.5e-18 94.7 62 82.3
SEGI_35595 Sequoiadendron giganteum HOM05D003070 ORTHO05D003567 3.3e-18 94.4 62 80.6
Manes.18G004900 Manihot esculenta HOM05D003070 ORTHO05D003567 4.3e-18 94.0 61 80.3
PSO541G6151 Papaver somniferum HOM05D003070 ORTHO05D003567 7.4e-18 93.2 62 80.6
AUR62011707 Chenopodium quinoa HOM05D003070 ORTHO05D003567 1.6e-17 92.0 61 78.7
MD08G1002200 Malus domestica HOM05D003070 ORTHO05D003567 3.7e-17 90.9 61 78.7
ClCG11G018690 Citrullus lanatus HOM05D003070 ORTHO05D003567 5.3e-16 87.0 61 72.1
THA.LOC104811465 Tarenaya hassleriana HOM05D003070 ORTHO05D003567 5.3e-16 87.0 61 77.0
Hund00358 Selenicereus undatus HOM05D003070 ORTHO05D003567 2.6e-15 84.7 61 75.4
CANSAT64G1298 Cannabis sativa HOM05D003070 ORTHO05D003567 3.4e-15 84.3 61 73.8
AUR62023608 Chenopodium quinoa HOM05D003070 ORTHO05D003567 3.4e-15 84.3 61 75.4
Os02g0102700 Oryza sativa ssp. japonica HOM05D003070 ORTHO05D003567 4.5e-15 84.0 61 72.1
Os03g0240800 Oryza sativa ssp. japonica HOM05D003070 ORTHO05D003567 4.5e-15 84.0 61 72.1
MD15G1001300 Malus domestica HOM05D003070 ORTHO05D003567 7.7e-15 83.2 61 73.8
TWI36G0363 Tripterygium wilfordii HOM05D003070 ORTHO05D003567 7.7e-15 83.2 61 70.5
unitig_22.g6031 Utricularia gibba HOM05D001030 ORTHO05D002278 1.0e-14 82.8 61 72.1
Eucgr.C04084 Eucalyptus grandis HOM05D003070 ORTHO05D003567 1.3e-14 82.4 61 70.5
Medtr8g092200 Medicago truncatula HOM05D003070 ORTHO05D003567 2.2e-14 81.6 61 72.1
Psat7g049720 Pisum sativum HOM05D003070 ORTHO05D003567 2.2e-14 81.6 61 72.1
SGA_v2.0_scaffold69G23095 Striga asiatica HOM05D003070 ORTHO05D003567 2.2e-14 81.6 62 71.0
TPR.G2168 Trifolium pratense HOM05D003070 ORTHO05D003567 2.2e-14 81.6 61 72.1
Oeu008125.2 Olea europaea HOM05D003070 ORTHO05D003567 2.9e-14 81.3 114 48.2
BolC7t42834H Brassica oleracea HOM05D003070 ORTHO05D003567 5.0e-14 80.5 61 73.8
BcaB03g12863 Brassica carinata HOM05D003070 ORTHO05D003567 2.5e-13 78.2 61 72.1
BcaB07g32057 Brassica carinata HOM05D003070 ORTHO05D003567 2.5e-13 78.2 61 72.1
A06p16580 Brassica napus HOM05D003070 ORTHO05D003567 2.5e-13 78.2 61 72.1
BraA06t24765Z Brassica rapa HOM05D003070 ORTHO05D003567 2.5e-13 78.2 61 72.1
Sp1g18290 Schrenkiella parvula HOM05D003070 ORTHO05D003567 2.5e-13 78.2 61 72.1
Sc14g0002430 Simmondsia chinensis HOM05D003070 ORTHO05D003567 2.5e-13 78.2 61 72.1
BcaC07g39041 Brassica carinata HOM05D003070 ORTHO05D003567 3.2e-13 77.8 61 72.1
BcaC05g25964 Brassica carinata HOM05D003070 ORTHO05D003567 4.2e-13 77.4 61 72.1
C05p19150 Brassica napus HOM05D003070 ORTHO05D003567 4.2e-13 77.4 61 72.1
BolC5t30615H Brassica oleracea HOM05D003070 ORTHO05D003567 4.2e-13 77.4 61 72.1
unitig_8.g3513 Utricularia gibba HOM05D001030 ORTHO05D003567 5.5e-13 77.0 61 67.2
Aqoxy5G01037 Aquilegia oxysepala HOM05D003070 ORTHO05D003567 1.2e-12 75.9 61 65.6
C08p20220 Brassica napus HOM05D003070 ORTHO05D003567 1.2e-12 75.9 61 70.5
BolC8t49651H Brassica oleracea HOM05D003070 ORTHO05D028052 1.2e-12 75.9 61 70.5
Cfa014085 Carpinus fangiana HOM05D003070 ORTHO05D003567 1.2e-12 75.9 61 65.6
CiPaw.08G073600 Carya illinoinensis HOM05D003070 ORTHO05D003567 1.2e-12 75.9 61 65.6
Haze_22786 Corylus avellana HOM05D003070 ORTHO05D003567 1.2e-12 75.9 61 65.6
Zm00001eb229320 Zea mays HOM05D003070 ORTHO05D003567 1.6e-12 75.5 40 92.5
Actinidia37920 Actinidia chinensis HOM05D003070 ORTHO05D003567 2.1e-12 75.1 61 63.9
Lj3g0021732 Lotus japonicus HOM05D003070 ORTHO05D003567 2.1e-12 75.1 61 65.6
CAN.G1671.3 Capsicum annuum HOM05D003070 ORTHO05D003567 2.7e-12 74.7 61 63.9
Cc02_g33860 Coffea canephora HOM05D003070 ORTHO05D003567 2.7e-12 74.7 61 65.6
Dinv31947 Davidia involucrata HOM05D003070 ORTHO05D003567 2.7e-12 74.7 61 65.6
QL02p014285 Quercus lobata HOM05D003070 ORTHO05D003567 3.6e-12 74.3 60 65.0
AL1G33520 Arabidopsis lyrata HOM05D003070 ORTHO05D003567 4.6e-12 73.9 61 67.2
Lalb_Chr23g0265771 Lupinus albus HOM05D003070 ORTHO05D003567 6.1e-12 73.6 61 65.6
Peaxi162Scf00083g00716 Petunia axillaris HOM05D003070 ORTHO05D003567 7.9e-12 73.2 61 62.3
Thhalv10009078m.g Eutrema salsugineum HOM05D003070 ORTHO05D003567 1.0e-11 72.8 65 66.2
Solyc02g084020.3 Solanum lycopersicum HOM05D003070 ORTHO05D003567 1.0e-11 72.8 61 62.3
Sopen02g028820 Solanum pennellii HOM05D003070 ORTHO05D003567 1.0e-11 72.8 61 62.3
PGSC0003DMG400003559 Solanum tuberosum HOM05D003070 ORTHO05D003567 1.0e-11 72.8 61 62.3
AT1G20580 Arabidopsis thaliana HOM05D003070 ORTHO05D003567 1.4e-11 72.4 61 65.6
CiPaw.07G138300 Carya illinoinensis HOM05D003070 ORTHO05D003567 1.4e-11 72.4 61 62.3
Migut.K00070 Erythranthe guttata HOM05D003070 ORTHO05D003567 1.4e-11 72.4 62 66.1
TAR628G0460 Trochodendron aralioides HOM05D003070 ORTHO05D003567 1.4e-11 72.4 61 63.9
HPP92_022158 Vanilla planifolia HOM05D003070 ORTHO05D003567 1.4e-11 72.4 61 67.2
GSVIVG01013364001 Vitis vinifera HOM05D003070 ORTHO05D003567 1.4e-11 72.4 61 63.9
ATR0661G400 Amborella trichopoda HOM05D003070 ORTHO05D003567 1.8e-11 72.0 62 64.5
BNapus_Darmor_BZH_scaffold_170p00090 Brassica napus HOM05D003070 ORTHO05D028052 1.8e-11 72.0 59 69.5
Carub.0001s2007 Capsella rubella HOM05D003070 ORTHO05D003567 2.3e-11 71.6 61 70.5
Cc02_g33830 Coffea canephora HOM05D003070 ORTHO05D003567 3.0e-11 71.2 61 63.9
Cc07_g21080 Coffea canephora HOM05D003070 ORTHO05D003567 3.0e-11 71.2 61 63.9
Lj4A805T23 Lonicera japonica HOM05D003070 ORTHO05D003567 3.0e-11 71.2 61 62.3
SGA_v2.0_scaffold105G30448 Striga asiatica HOM05D003070 ORTHO05D003567 3.0e-11 71.2 63 63.5
arahy.Tifrunner.gnm1.ann1.NVS6IC Arachis hypogaea HOM05D003070 ORTHO05D003567 3.9e-11 70.9 60 65.0
arahy.Tifrunner.gnm1.ann1.SVUP05 Arachis hypogaea HOM05D003070 ORTHO05D003567 3.9e-11 70.9 60 65.0
MBI05_g07853_MAGBIO Magnolia biondii HOM05D003070 ORTHO05D003567 5.1e-11 70.5 62 64.5
Actinidia15494 Actinidia chinensis HOM05D003070 ORTHO05D003567 6.7e-11 70.1 61 62.3
CARHR021050 Cardamine hirsuta HOM05D003070 ORTHO05D003567 6.7e-11 70.1 61 68.9
Peaxi162Scf00010g00029 Petunia axillaris HOM05D003070 ORTHO05D003567 6.7e-11 70.1 61 60.7
Dinv05529 Davidia involucrata HOM05D003070 ORTHO05D003567 8.8e-11 69.7 61 62.3
Oeu033775.1 Olea europaea HOM05D003070 ORTHO05D003567 8.8e-11 69.7 61 62.3
Zm00001eb010240 Zea mays HOM05D003070 ORTHO05D003567 8.8e-11 69.7 61 62.3
Lalb_Chr08g0246401 Lupinus albus HOM05D003070 ORTHO05D003567 1.1e-10 69.3 61 62.3
Nitab4.5_0012215g0010 Nicotiana tabacum HOM05D003070 ORTHO05D003567 1.1e-10 69.3 61 60.7
Ciclev10002830m.g Citrus clementina HOM05D003070 ORTHO05D003567 1.5e-10 68.9 61 60.7
TAR381G1070 Trochodendron aralioides HOM05D003070 ORTHO05D003567 1.5e-10 68.9 61 62.3
Nn5g30951 Nelumbo nucifera HOM05D003070 ORTHO05D003567 2.0e-10 68.6 61 60.7
Peaxi162Scf00439g01010 Petunia axillaris HOM05D003070 ORTHO05D003567 2.0e-10 68.6 61 59.0
SalBow6G1017 Salvia bowleyana HOM05D003070 ORTHO05D003567 2.0e-10 68.6 61 60.7
MSTRG.6449 Avicennia marina HOM05D003070 ORTHO05D003567 2.6e-10 68.2 61 60.7
SalBow1G1789 Salvia bowleyana HOM05D003070 ORTHO05D003567 2.6e-10 68.2 61 60.7
SalBow1G7550 Salvia bowleyana HOM05D003070 ORTHO05D003567 2.6e-10 68.2 61 60.7
MSTRG.26110 Avicennia marina HOM05D003070 ORTHO05D003567 3.3e-10 67.8 61 60.7
Sed0009612 Sechium edule HOM05D003070 ORTHO05D003567 3.3e-10 67.8 61 59.0
PGSC0003DMG400019936 Solanum tuberosum HOM05D003070 ORTHO05D003567 3.3e-10 67.8 61 60.7
Ca_17677_v3 Cicer arietinum L. HOM05D003070 ORTHO05D003567 5.7e-10 67.0 61 62.3
Ca_29603_v3 Cicer arietinum L. HOM05D003070 ORTHO05D003567 5.7e-10 67.0 61 62.3
Glyma.05G185800 Glycine max HOM05D003070 ORTHO05D003567 5.7e-10 67.0 61 62.3
Glyma.08G143900 Glycine max HOM05D003070 ORTHO05D003567 5.7e-10 67.0 61 62.3
Phvul.002G266900 Phaseolus vulgaris HOM05D003070 ORTHO05D003567 5.7e-10 67.0 61 62.3
VMungo0251G1496 Vigna mungo HOM05D003070 ORTHO05D003567 5.7e-10 67.0 61 62.3
EL10Ac9g21252 Beta vulgaris HOM05D003070 ORTHO05D003567 7.4e-10 66.6 61 60.7
Hma1.2p1_1100F.1_g256990 Hydrangea macrophylla HOM05D003070 ORTHO05D003567 7.4e-10 66.6 61 59.0
Nitab4.5_0004254g0060 Nicotiana tabacum HOM05D003070 ORTHO05D003567 7.4e-10 66.6 62 61.3
Solyc03g033600.3 Solanum lycopersicum HOM05D003070 ORTHO05D003567 7.4e-10 66.6 61 59.0
Sopen03g006380 Solanum pennellii HOM05D003070 ORTHO05D003567 7.4e-10 66.6 61 59.0
CDE05G1714 Ceratophyllum demersum HOM05D003070 ORTHO05D003567 9.7e-10 66.2 61 57.4
CDE05G3019 Ceratophyllum demersum HOM05D003070 ORTHO05D003567 9.7e-10 66.2 61 57.4
Cc07_g21070 Coffea canephora HOM05D003070 ORTHO05D003567 9.7e-10 66.2 61 60.7
Migut.J01784 Erythranthe guttata HOM05D003070 ORTHO05D003567 9.7e-10 66.2 62 62.9
vmacro21807 Vaccinium macrocarpon HOM05D003070 ORTHO05D003567 9.7e-10 66.2 61 59.0
CANSAT25G0152 Cannabis sativa HOM05D003070 ORTHO05D003567 1.3e-09 65.9 61 60.7
CAN.G1365.2 Capsicum annuum HOM05D003070 ORTHO05D003567 1.3e-09 65.9 61 59.0
Sopen02g013210 Solanum pennellii HOM05D003070 ORTHO05D003567 1.3e-09 65.9 61 59.0
GSVIVG01023894001 Vitis vinifera HOM05D003070 ORTHO05D003567 1.7e-09 65.5 61 57.4
CSS0005946 Camellia sinensis var. sinensis HOM05D003070 ORTHO05D003567 2.2e-09 65.1 61 57.4
CSS0015226 Camellia sinensis var. sinensis HOM05D003070 ORTHO05D003567 2.2e-09 65.1 61 57.4
Rhsim06G0006800 Rhododendron simsii HOM05D003070 ORTHO05D003567 2.2e-09 65.1 59 57.6
Dinv41881 Davidia involucrata HOM05D003070 ORTHO05D003567 2.8e-09 64.7 61 59.0
Rhsim07G0255000 Rhododendron simsii HOM05D003070 ORTHO05D003567 2.8e-09 64.7 61 57.4
PGSC0003DMG400022564 Solanum tuberosum HOM05D003070 ORTHO05D003567 2.8e-09 64.7 61 55.7
vmacro04406 Vaccinium macrocarpon HOM05D003070 ORTHO05D003567 2.8e-09 64.7 61 57.4
Lj4A10T83 Lonicera japonica HOM05D003070 ORTHO05D003567 3.7e-09 64.3 62 61.3
Oeu058344.1 Olea europaea HOM05D003070 ORTHO05D003567 3.7e-09 64.3 61 60.7
Solyc02g062240.3 Solanum lycopersicum HOM05D003070 ORTHO05D003567 3.7e-09 64.3 61 57.4
Lalb_Chr11g0061601 Lupinus albus HOM05D003070 ORTHO05D003567 4.8e-09 63.9 61 59.0
Cpa.g.sc801.3 Carica papaya HOM05D003070 ORTHO05D003567 8.2e-09 63.2 61 57.4
Nitab4.5_0005721g0120 Nicotiana tabacum HOM05D003070 ORTHO05D003567 8.2e-09 63.2 58 60.3
Atru.chr13.140 Acer truncatum HOM05D003070 ORTHO05D003567 1.1e-08 62.8 61 57.4
RcHm_v2.0_Chr6g0304391 Rosa chinensis HOM05D003070 ORTHO05D003567 1.1e-08 62.8 61 59.0
MELO3C017020.2 Cucumis melo HOM05D003070 ORTHO05D003567 1.4e-08 62.4 61 55.7
CsaV3_4G037220 Cucumis sativus L. HOM05D003070 ORTHO05D003567 1.4e-08 62.4 61 55.7
Cc07_g21090 Coffea canephora HOM05D003070 ORTHO05D003567 1.8e-08 62.0 61 59.0
Prupe.1G353900 Prunus persica HOM05D003070 ORTHO05D003567 2.4e-08 61.6 61 57.4
Gohir.D02G100500 Gossypium hirsutum HOM05D003070 ORTHO05D003567 3.1e-08 61.2 61 57.4
Nn6g31729 Nelumbo nucifera HOM05D003070 ORTHO05D003567 3.1e-08 61.2 61 55.7
Zm00001eb399040 Zea mays HOM05D003070 ORTHO05D003567 3.1e-08 61.2 61 55.7
Duzib041G0259 Durio zibethinus HOM05D003070 ORTHO05D003567 5.3e-08 60.5 61 55.7
Hma1.2p1_0507F.1_g168560 Hydrangea macrophylla HOM05D003070 ORTHO05D003567 5.3e-08 60.5 61 54.1
Duzib116G0833 Durio zibethinus HOM05D003070 ORTHO05D003567 6.9e-08 60.1 61 55.7
Gohir.A01G105400 Gossypium hirsutum HOM05D003070 ORTHO05D003567 6.9e-08 60.1 61 54.1
Gohir.A02G084600 Gossypium hirsutum HOM05D003070 ORTHO05D003567 6.9e-08 60.1 61 55.7
Gohir.A10G117532 Gossypium hirsutum HOM05D003070 ORTHO05D003567 6.9e-08 60.1 61 55.7
Gohir.D01G091700 Gossypium hirsutum HOM05D003070 ORTHO05D003567 6.9e-08 60.1 61 54.1
Gorai.002G116800 Gossypium raimondii HOM05D003070 ORTHO05D003567 6.9e-08 60.1 61 54.1
Gorai.005G113900 Gossypium raimondii HOM05D003070 ORTHO05D003567 6.9e-08 60.1 61 55.7
AUR62004691 Chenopodium quinoa HOM05D003070 ORTHO05D003567 9.1e-08 59.7 59 55.9
Lj4g0014875 Lotus japonicus HOM05D003070 ORTHO05D003567 9.1e-08 59.7 62 56.5
C07p22950 Brassica napus HOM05D003070 ORTHO05D003567 1.2e-07 59.3 39 79.5
COL.COLO4_28635 Corchorus olitorius HOM05D003070 ORTHO05D003567 1.2e-07 59.3 61 54.1
Duzib093G1878 Durio zibethinus HOM05D003070 ORTHO05D003567 2.0e-07 58.5 61 54.1
Ah.01g023690 Amaranthus hybridus HOM05D003070 ORTHO05D003567 4.5e-07 57.4 61 54.1
Nitab4.5_0001133g0080 Nicotiana tabacum HOM05D003070 ORTHO05D003567 5.9e-07 57.0 58 51.7
Thecc.08G059700 Theobroma cacao HOM05D003070 ORTHO05D003567 1.3e-06 55.8 61 52.5
Lsat_1_v5_gn_2_4001 Lactuca sativa HOM05D003070 ORTHO05D003567 2.9e-06 54.7 29 86.2
COL.COLO4_05221 Corchorus olitorius HOM05D003070 ORTHO05D003567 3.8e-06 54.3 61 54.1
Sp5g31440 Schrenkiella parvula HOM05D003070 ORTHO05D003567 5.0e-06 53.9 61 52.5
THA.LOC104809773 Tarenaya hassleriana HOM05D003070 ORTHO05D003567 8.5e-06 53.1 61 54.1


User provided reference genes

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