Gene: Nitab4.5_0004254g0060

General Information

Structural Information

  • Species Nicotiana tabacum
  • Gene Identifier Nitab4.5_0004254g0060
  • Transcript Identifier Nitab4.5_0004254g0060.1
  • Gene Type Coding gene
  • Location Nitab4.5_0004254 : 165567-168850 : positive

Gene Family Information

  • ID HOM05D003070
  • #Genes/#Species 223/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Nitab4.5_0004254g0060.1
  • SR1-identifier Nta03g18860.1

Descriptions

  • Description U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3, Like-Sm (LSM) domain, Ribonucleoprotein LSM domain, Ribonucleoprotein LSM domain, eukaryotic/archaea-type
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000387
IEA
InterProspliceosomal snRNP assembly
GO:0006396
IEA
InterProRNA processing
GO:0048589
ISO
PLAZA Integrative Orthologydevelopmental growth AT1G20580
GO:0000398
ISO
PLAZA Integrative OrthologymRNA splicing, via spliceosome AT1G20580

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
InterProspliceosomal complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G76300
GO:0016604
ISO
PLAZA Integrative Orthologynuclear body AT1G76300
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G20580
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G20580

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001163 LSM domain, eukaryotic/archaea-type
IPR010920 LSM domain superfamily
IPR034099 Small nuclear ribonucleoprotein Sm D3
IPR027141 Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
Mapman id Description
16.2.2.4 RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-D3