Gene: AT1G20580

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G20580
  • Transcript Identifier AT1G20580.1
  • Gene Type Coding gene
  • Location Chr1 : 7128979-7130371 : positive

Gene Family Information

  • ID HOM05D003070
  • #Genes/#Species 223/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G20580.1
  • uniprot Q9LM92

Descriptions

  • Description Small nuclear ribonucleoprotein family protein
  • Computational description Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: snRNP core protein SMD3 (TAIR:AT1G76300.1); Has 1253 Blast hits to 1253 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 480; Fungi - 336; Plants - 223; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0000387
IEA
GOA Databasespliceosomal snRNP assembly
GO:0000387
IBA
Gene Ontologyspliceosomal snRNP assembly1
GO:0000387
IEA
InterProspliceosomal snRNP assembly
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0048589
IMP
Gene Ontologydevelopmental growth2
GO:0000398
IMP
Gene OntologymRNA splicing, via spliceosome2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071013
IBA
Gene Ontologycatalytic step 2 spliceosome1
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005681
IEA
InterProspliceosomal complex
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005829
IDA
IEA
GOA Databasecytosol
GO:0005730
IDA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus3
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005685
IBA
Gene OntologyU1 snRNP1
GO:0005689
IBA
Gene OntologyU12-type spliceosomal complex1
GO:0034715
IBA
Gene OntologypICln-Sm protein complex1
GO:0071011
IBA
Gene Ontologyprecatalytic spliceosome1
GO:0005687
IBA
Gene OntologyU4 snRNP1
GO:0034719
IBA
Gene OntologySMN-Sm protein complex1
GO:0005686
IBA
Gene OntologyU2 snRNP1
GO:0000243
IBA
Gene Ontologycommitment complex1
GO:0097526
IBA
Gene Ontologyspliceosomal tri-snRNP complex1
GO:0005682
IBA
Gene OntologyU5 snRNP1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR010920 LSM domain superfamily
IPR034099 Small nuclear ribonucleoprotein Sm D3
IPR027141 Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
IPR001163 LSM domain, eukaryotic/archaea-type
Mapman id Description
16.2.2.4 RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-D3