Gene: Cc02_g33830
General Information
Structural Information
- Species Coffea canephora
- Gene Identifier Cc02_g33830
- Transcript Identifier Cc02_g33830.1
- Gene Type Coding gene
- Location chr2 : 46770137-46770733 : positive
Gene Family Information
- ID HOM05D003070
- #Genes/#Species 223/98
- Phylogenetic origin
- ID ORTHO05D003567
- #Genes/#Species 215/99
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- UniProtKB B9H5H6
- UniProtKB G7LBD3
- UniProtKB B9GQ12
- id GSCOCG00008627001
Descriptions
- Description Small nuclear ribonucleoprotein family protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0048589 | ISO | PLAZA Integrative Orthology | developmental growth | AT1G20580 |
| GO:0000398 | ISO | PLAZA Integrative Orthology | mRNA splicing, via spliceosome | AT1G20580 |
| GO:0000387 | ISO | PLAZA Homology (enrichment) | spliceosomal snRNP assembly | HOM05D003070 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G76300 |
| GO:0016604 | ISO | PLAZA Integrative Orthology | nuclear body | AT1G76300 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G20580 |
| GO:0005681 | ISO | PLAZA Homology (enrichment) | spliceosomal complex | HOM05D003070 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT1G20580 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027141 | Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3 |
| Mapman id | Description |
|---|---|
| 35.2 | not assigned.not annotate |