Gene: vmacro04406

General Information

Structural Information

  • Species Vaccinium macrocarpon
  • Gene Identifier vmacro04406
  • Transcript Identifier vmacro04406-RA
  • Gene Type Coding gene
  • Location chr12_Vaccinium_macrocarpon_Stevens_v1 : 785802-789482 : positive

Gene Family Information

  • ID HOM05D003070
  • #Genes/#Species 223/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id vmacro04406_Vaccinium_macrocarpon_Stevens_v1

Descriptions

  • Description Similar to SMD3B: Small nuclear ribonucleoprotein SmD3b (Arabidopsis thaliana OX=3702)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
InterProRNA processing
GO:0000387
IEA
InterProspliceosomal snRNP assembly
GO:0048589
ISO
PLAZA Integrative Orthologydevelopmental growth AT1G20580
GO:0000398
ISO
PLAZA Integrative OrthologymRNA splicing, via spliceosome AT1G20580

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
InterProspliceosomal complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G76300
GO:0016604
ISO
PLAZA Integrative Orthologynuclear body AT1G76300
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G20580
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G20580

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027141 Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
IPR010920 LSM domain superfamily
IPR001163 LSM domain, eukaryotic/archaea-type
IPR034099 Small nuclear ribonucleoprotein Sm D3
Mapman id Description
16.2.2.4 RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-D3