Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g20080 Coffea canephora HOM05D004823 ORTHO05D005814 1.0e-108 396.7 194 100.0
Cc00_g16960 Coffea canephora HOM05D004823 ORTHO05D005814 3.0e-81 305.4 196 80.1
Oeu034864.1 Olea europaea HOM05D004823 ORTHO05D005814 8.0e-42 174.5 198 51.0
CSS0005414 Camellia sinensis var. sinensis HOM05D004823 ORTHO05D005814 4.4e-40 168.7 198 50.5
Hma1.2p1_0601F.1_g187160 Hydrangea macrophylla HOM05D004823 ORTHO05D005814 2.3e-36 156.4 207 46.9
Dinv31197 Davidia involucrata HOM05D004823 ORTHO05D005814 1.9e-35 153.3 206 47.6
Hma1.2p1_0601F.1_g187170 Hydrangea macrophylla HOM05D004823 ORTHO05D005814 4.0e-33 145.6 207 45.4
vmacro21094 Vaccinium macrocarpon HOM05D004823 ORTHO05D005814 1.5e-32 143.7 206 41.7
Migut.B01471 Erythranthe guttata HOM05D004823 ORTHO05D005814 4.4e-32 142.1 217 40.1
SGA_v2.0_scaffold578G53026 Striga asiatica HOM05D004823 ORTHO05D005814 6.4e-31 138.3 206 42.7
Cfa011006 Carpinus fangiana HOM05D004823 ORTHO05D005814 5.4e-30 135.2 198 40.9
QL04p025376 Quercus lobata HOM05D004823 ORTHO05D005814 2.7e-29 132.9 198 41.9
Peaxi162Scf00417g00039 Petunia axillaris HOM05D004823 ORTHO05D005814 7.8e-29 131.3 196 43.4
Peaxi162Scf01124g00124 Petunia axillaris HOM05D004823 ORTHO05D005814 7.8e-29 131.3 196 43.4
CAN.G1480.3 Capsicum annuum HOM05D004823 ORTHO05D005814 1.7e-28 130.2 204 40.2
Cpa.g.sc10.21 Carica papaya HOM05D004823 ORTHO05D005814 3.0e-28 129.4 197 40.6
Solyc01g088380.3 Solanum lycopersicum HOM05D004823 ORTHO05D005814 2.5e-27 126.3 194 39.2
Sopen01g035210 Solanum pennellii HOM05D004823 ORTHO05D005814 3.3e-27 125.9 194 39.2
CiPaw.14G012800 Carya illinoinensis HOM05D004823 ORTHO05D005814 4.3e-27 125.6 199 39.7
TWI23G0233 Tripterygium wilfordii HOM05D004823 ORTHO05D005814 5.6e-27 125.2 204 36.3
GSVIVG01018404001 Vitis vinifera HOM05D004823 ORTHO05D005814 5.6e-27 125.2 202 42.1
Actinidia33293 Actinidia chinensis HOM05D004823 ORTHO05D005814 2.1e-26 123.2 194 40.2
Potri.014G180200 Populus trichocarpa HOM05D004823 ORTHO05D005814 1.1e-25 120.9 192 41.1
DCAR_029534 Daucus carota HOM05D004823 ORTHO05D005814 1.8e-25 120.2 194 41.8
Rhsim01G0145100 Rhododendron simsii HOM05D004823 ORTHO05D005814 1.8e-25 120.2 205 40.5
Manes.05G060200 Manihot esculenta HOM05D004823 ORTHO05D005814 1.2e-24 117.5 198 37.9
FAN06G0930 Fragaria x ananassa HOM05D004823 ORTHO05D005814 2.0e-24 116.7 203 41.4
RcHm_v2.0_Chr1g0343241 Rosa chinensis HOM05D004823 ORTHO05D005814 2.6e-24 116.3 158 46.2
Nn1g00608 Nelumbo nucifera HOM05D004823 ORTHO05D005814 4.4e-24 115.5 197 40.1
FAN03G0722 Fragaria x ananassa HOM05D004823 ORTHO05D005814 5.8e-24 115.2 203 40.4
Lsat_1_v5_gn_4_44681 Lactuca sativa HOM05D004823 ORTHO05D005814 5.8e-24 115.2 199 40.7
TAR375G0889 Trochodendron aralioides HOM05D004823 ORTHO05D005814 9.9e-24 114.4 200 40.5
Lalb_Chr03g0040701 Lupinus albus HOM05D004823 ORTHO05D005814 2.9e-23 112.8 195 37.4
Atru.chr5.51 Acer truncatum HOM05D004823 ORTHO05D005814 3.8e-23 112.5 201 37.3
Duzib106G1753 Durio zibethinus HOM05D004823 ORTHO05D005814 8.4e-23 111.3 195 37.9
AUR62013806 Chenopodium quinoa HOM05D004823 ORTHO05D005814 1.9e-22 110.2 165 41.8
FvH4_7g08480 Fragaria vesca HOM05D004823 ORTHO05D005814 1.9e-22 110.2 193 41.5
Nitab4.5_0006227g0020 Nicotiana tabacum HOM05D004823 ORTHO05D005814 2.4e-22 109.8 251 32.7
PSO782G4318 Papaver somniferum HOM05D004823 ORTHO05D005814 4.1e-22 109.0 197 39.1
Atru.chr5.23 Acer truncatum HOM05D004823 ORTHO05D005814 5.4e-22 108.6 214 35.0
AUR62023352 Chenopodium quinoa HOM05D004823 ORTHO05D005814 7.1e-22 108.2 160 41.9
Gohir.D04G072675 Gossypium hirsutum HOM05D004823 ORTHO05D005814 7.1e-22 108.2 196 36.2
Gorai.012G081700 Gossypium raimondii HOM05D004823 ORTHO05D005814 7.1e-22 108.2 196 36.2
Gohir.A05G333800 Gossypium hirsutum HOM05D004823 ORTHO05D005814 1.2e-21 107.5 198 37.4
CANSAT21G1834 Cannabis sativa HOM05D004823 ORTHO05D005814 1.6e-21 107.1 221 38.9
MD07G1085900 Malus domestica HOM05D004823 ORTHO05D005814 1.6e-21 107.1 197 38.6
Psat3g163800 Pisum sativum HOM05D004823 ORTHO05D005814 1.6e-21 107.1 198 37.9
Nitab4.5_0013532g0020 Nicotiana tabacum HOM05D004823 ORTHO05D005814 2.1e-21 106.7 253 31.6
Ciclev10018521m.g Citrus clementina HOM05D004823 ORTHO05D005814 2.7e-21 106.3 179 37.4
MELO3C006248.2 Cucumis melo HOM05D004823 ORTHO05D005814 1.3e-20 104.0 198 37.9
PSO063G2621 Papaver somniferum HOM05D004823 ORTHO05D005814 1.3e-20 104.0 197 38.1
Aa31sc17G210 Aethionema arabicum HOM05D004823 ORTHO05D005814 5.1e-20 102.1 205 34.6
C08p49810 Brassica napus HOM05D004823 ORTHO05D005814 5.1e-20 102.1 204 36.3
Thecc.10G001100 Theobroma cacao HOM05D004823 ORTHO05D005814 5.1e-20 102.1 157 38.9
BolC8t52508H Brassica oleracea HOM05D004823 ORTHO05D005814 6.6e-20 101.7 204 36.3
Aqoxy5G01066 Aquilegia oxysepala HOM05D004823 ORTHO05D005814 8.6e-20 101.3 195 36.9
Ca_04616_v3 Cicer arietinum L. HOM05D004823 ORTHO05D005814 8.6e-20 101.3 197 37.1
CARHR008760 Cardamine hirsuta HOM05D004823 ORTHO05D005814 1.5e-19 100.5 203 33.0
MD02G1227500 Malus domestica HOM05D004823 ORTHO05D005814 2.5e-19 99.8 146 45.2
A09p65740 Brassica napus HOM05D004823 ORTHO05D005814 3.3e-19 99.4 199 35.2
ECA234G1924 Erigeron canadensis HOM05D004823 ORTHO05D005814 5.6e-19 98.6 194 38.7
AT1G08840 Arabidopsis thaliana HOM05D004823 ORTHO05D005814 7.3e-19 98.2 199 34.2
BraA09t41917Z Brassica rapa HOM05D004823 ORTHO05D005814 9.6e-19 97.8 198 33.8
Carub.0001s0819 Capsella rubella HOM05D004823 ORTHO05D005814 9.6e-19 97.8 197 34.5
COL.COLO4_19317 Corchorus olitorius HOM05D004823 ORTHO05D005814 9.6e-19 97.8 193 35.2
Thhalv10006571m.g Eutrema salsugineum HOM05D004823 ORTHO05D005814 1.2e-18 97.4 197 33.5
ClCG05G002760 Citrullus lanatus HOM05D004823 ORTHO05D005814 1.6e-18 97.1 199 34.7
Eucgr.D01139 Eucalyptus grandis HOM05D004823 ORTHO05D005814 1.6e-18 97.1 145 42.1
Sp1g07480 Schrenkiella parvula HOM05D004823 ORTHO05D005814 2.1e-18 96.7 203 33.5
AL1G19270 Arabidopsis lyrata HOM05D004823 ORTHO05D005814 4.7e-18 95.5 199 34.2
CsaV3_3G010270 Cucumis sativus L. HOM05D004823 ORTHO05D005814 4.7e-18 95.5 209 34.4
EL10Ac8g19253 Beta vulgaris HOM05D004823 ORTHO05D005814 6.2e-18 95.1 150 41.3
Lj7P553T26 Lonicera japonica HOM05D004823 ORTHO05D005814 6.2e-18 95.1 170 41.2
Sc08g0006560 Simmondsia chinensis HOM05D004823 ORTHO05D005814 6.2e-18 95.1 141 44.0
Aqoxy7G00645 Aquilegia oxysepala HOM05D004823 ORTHO05D005814 1.4e-17 94.0 195 35.4
Sed0025177 Sechium edule HOM05D004823 ORTHO05D005814 1.4e-17 94.0 205 36.1
HanXRQChr08g0226321 Helianthus annuus HOM05D004823 ORTHO05D005814 1.8e-17 93.6 147 42.2
Prupe.2G112200 Prunus persica HOM05D004823 ORTHO05D005814 1.8e-17 93.6 193 35.8
Sabra14G0140400 Salix brachista HOM05D004823 ORTHO05D005814 1.8e-17 93.6 190 37.9
THA.LOC104808236 Tarenaya hassleriana HOM05D004823 ORTHO05D005814 1.8e-17 93.6 203 32.5
Phvul.005G016100 Phaseolus vulgaris HOM05D004823 ORTHO05D005814 2.4e-17 93.2 151 40.4
Lj1g0025017 Lotus japonicus HOM05D004823 ORTHO05D005814 3.1e-17 92.8 165 37.0
CDE11G0754 Ceratophyllum demersum HOM05D004823 ORTHO05D005814 4.0e-17 92.4 140 42.1
Haze_02925 Corylus avellana HOM05D004823 ORTHO05D005814 8.9e-17 91.3 157 36.9
Medtr7g034575 Medicago truncatula HOM05D004823 ORTHO05D005814 2.0e-16 90.1 201 33.8
TPR.G14862 Trifolium pratense HOM05D004823 ORTHO05D005814 7.6e-16 88.2 200 36.0
BcaC07g41923 Brassica carinata HOM05D004823 ORTHO05D005814 1.7e-15 87.0 152 37.5
VMungo1080G1086 Vigna mungo HOM05D004823 ORTHO05D005814 6.4e-15 85.1 156 37.2
arahy.Tifrunner.gnm1.ann1.61K3Y7 Arachis hypogaea HOM05D004823 ORTHO05D005814 8.4e-15 84.7 202 33.7
arahy.Tifrunner.gnm1.ann1.GG1KFP Arachis hypogaea HOM05D004823 ORTHO05D005814 5.4e-14 82.0 200 33.5
Glyma.06G310500 Glycine max HOM05D004823 ORTHO05D005814 5.4e-14 82.0 195 33.8
Zm00001eb072560 Zea mays HOM05D004823 ORTHO05D005814 9.3e-14 81.3 145 40.7
PGR083G0266 Punica granatum HOM05D004823 ORTHO05D005814 3.5e-13 79.3 204 31.9
Ah.15g091500 Amaranthus hybridus HOM05D004823 ORTHO05D005814 1.0e-12 77.8 156 36.5
ATR0705G062 Amborella trichopoda HOM05D004823 ORTHO05D005814 1.3e-12 77.4 195 32.8
FAN10G1986 Fragaria x ananassa HOM05D004823 ORTHO05D005814 2.3e-12 76.6 309 27.8
Os04g0588200 Oryza sativa ssp. japonica HOM05D004823 ORTHO05D005814 2.8e-10 69.7 155 34.8
SHI13672 Sapria himalayana HOM05D004823 ORTHO05D005814 1.1e-09 67.8 121 34.7
Hund17140 Selenicereus undatus HOM05D004823 ORTHO05D005814 2.0e-08 63.5 64 46.9
SEGI_24819 Sequoiadendron giganteum HOM05D066805 ORTHO05D005814 5.4e-06 55.5 47 51.1


User provided reference genes

Program Settings