Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1896.3 937 100.0
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1585.9 947 82.2
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1557.3 950 81.3
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1555.4 952 80.7
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1551.6 950 80.6
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1550.4 951 80.7
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1550.0 939 80.7
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1543.5 944 80.7
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1542.7 944 80.7
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1542.7 946 80.3
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1541.9 948 80.6
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1540.8 947 80.1
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1540.8 942 81.0
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1540.4 952 79.7
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1533.9 937 81.0
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1533.5 944 80.2
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1533.5 942 80.4
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1531.5 951 79.5
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1531.5 940 80.5
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1530.8 947 80.5
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1530.4 943 80.7
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1530.0 942 79.9
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1529.6 953 78.6
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1528.5 945 80.7
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1526.9 952 78.4
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1526.1 943 80.0
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1522.7 954 79.0
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1522.7 948 79.9
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1521.5 952 79.1
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1519.2 937 80.7
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1517.3 951 79.3
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1515.4 952 78.9
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1515.4 952 78.9
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1513.0 954 79.0
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1512.7 943 78.8
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1512.3 954 78.6
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1510.7 953 78.8
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1510.0 946 78.3
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1508.8 948 80.2
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1508.0 951 78.3
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1507.7 954 78.1
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1507.3 945 78.8
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1507.3 944 78.8
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1507.3 944 78.4
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1507.3 954 78.6
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1506.9 952 78.8
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1505.7 952 78.7
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1503.4 950 79.2
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1502.6 951 78.3
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1501.9 949 78.8
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1501.9 951 78.3
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1501.5 952 78.6
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1501.1 950 78.3
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1497.3 952 78.2
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1496.9 945 77.8
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1493.4 950 78.4
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1491.9 952 77.9
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1490.3 946 77.4
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1489.6 954 78.4
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1489.2 955 78.4
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1488.4 946 77.8
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1487.2 950 78.3
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1486.9 956 77.7
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1485.3 950 78.5
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1484.2 957 78.0
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1479.9 953 77.6
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1479.9 958 76.7
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1479.2 950 76.8
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1476.1 937 78.0
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1473.0 952 77.1
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1473.0 938 76.8
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1470.7 956 76.9
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1470.7 949 75.2
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1468.8 952 76.9
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1468.8 948 77.0
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1468.8 948 77.0
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1468.4 940 77.0
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1468.0 961 76.2
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1466.8 943 77.0
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1461.4 951 74.9
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1460.7 950 77.3
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1460.7 984 75.6
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1459.5 952 76.5
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1459.1 948 76.5
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1458.7 948 76.5
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1458.4 952 76.4
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1458.0 957 76.7
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1455.7 948 76.4
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1455.3 942 76.6
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1455.3 950 76.3
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1454.5 948 76.5
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1454.1 948 76.2
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1454.1 948 76.2
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1453.0 948 76.2
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1449.5 939 76.0
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1444.5 943 76.1
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1443.3 954 75.7
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1432.5 961 74.4
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1425.2 946 75.3
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1405.6 937 73.9
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1399.0 955 74.3
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1387.1 956 71.0
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1384.4 945 71.3
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1342.8 938 70.6
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1328.5 836 79.3
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1323.5 939 72.5
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1309.3 853 76.6
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1307.4 942 68.8
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1262.7 849 75.5
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1193.3 732 80.3
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1173.7 952 64.8
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1173.7 982 59.9
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1172.1 960 60.7
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1140.2 707 79.3
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1092.8 939 59.5
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1091.6 1018 55.3
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 1.0e-307 1060.1 666 78.5
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 2.2e-302 1042.3 635 80.5
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 6.2e-273 944.5 695 67.3
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 8.2e-225 784.6 753 52.7
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 3.1e-208 729.6 463 76.7
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 4.0e-179 632.9 438 71.0
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 5.0e-121 439.9 307 67.4
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 7.9e-119 432.6 1306 26.6
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 4.8e-108 396.7 639 38.7
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 1.9e-72 278.5 206 68.4
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 9.8e-69 266.2 207 67.1
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 9.2e-59 233.0 178 66.3
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 5.8e-53 213.8 298 43.3
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.1e-48 199.5 106 87.7
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 1.2e-45 189.5 121 75.2
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 5.4e-35 154.1 139 57.6
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.6e-34 152.5 103 68.9
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 7.6e-29 133.7 64 93.8
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 4.8e-15 87.8 80 58.8
Actinidia07884 Actinidia chinensis HOM05D005707 ORTHO05D057301 7.4e-08 63.9 92 44.6
MD09G1123100 Malus domestica HOM05D005707 ORTHO05D048631 6.9e-06 57.4 45 64.4


User provided reference genes

Program Settings