Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 3446.0 1790 100.0
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 2420.2 1723 72.7
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2397.1 1799 71.1
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 2362.0 1789 68.5
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 2338.5 1796 67.8
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 2319.3 1799 68.7
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 2312.0 1801 68.6
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2311.2 1817 67.0
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 2308.1 1803 67.1
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2291.9 1810 67.2
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2290.0 1827 67.1
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2288.5 1823 66.5
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2266.9 1823 67.0
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2258.8 1812 66.6
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 2251.5 1880 64.1
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2251.5 1796 68.0
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2238.0 1823 66.2
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 2231.4 1794 66.7
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2231.1 1820 64.5
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 2228.8 1816 64.9
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 2226.4 1772 65.6
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 2225.3 1812 65.2
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 2224.9 1812 65.5
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 2217.6 1720 68.4
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2206.4 1801 65.4
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 2199.5 1889 63.9
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2197.5 1820 64.9
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2193.3 1826 64.7
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 2187.9 1828 63.6
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 2180.2 1820 64.3
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2162.5 1817 64.6
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 2161.7 1717 67.8
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2160.6 1824 64.3
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 2156.7 1810 64.3
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 2150.6 1833 64.5
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 2149.8 1812 63.0
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 2138.6 1837 62.5
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2134.4 1714 66.8
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 2134.0 1821 63.3
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2134.0 1829 63.4
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2127.8 1828 63.1
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2127.1 1814 62.9
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 2125.5 1880 61.5
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2122.1 1821 63.2
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2119.7 1773 63.7
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 2116.3 1820 62.4
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2097.4 1829 62.1
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2094.7 1830 61.7
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2093.5 1795 62.3
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 2090.5 1838 62.0
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 2084.7 1867 60.7
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 2083.1 1820 61.5
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2082.4 1746 63.6
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2070.8 1828 62.0
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 2069.7 1769 62.7
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2068.9 1513 72.0
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 2063.9 1628 68.5
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 2060.4 1744 62.6
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 2035.8 1703 64.9
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 2018.8 1827 60.0
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 2015.7 1792 60.1
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 2009.6 1709 63.1
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 2004.9 1820 59.5
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 2000.3 1807 58.8
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 1999.2 1819 60.6
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 1995.7 1810 59.1
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1995.7 1700 64.9
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 1994.9 1809 59.3
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1983.4 1817 58.4
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1983.4 1817 58.4
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 1980.7 1747 60.9
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1972.2 1667 63.7
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1970.7 1802 60.4
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1967.2 1812 57.7
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1964.9 1816 57.7
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1964.1 1805 57.8
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 1964.1 1815 59.1
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1961.4 1514 68.0
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1956.0 1813 58.3
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1956.0 1813 58.3
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1950.3 1816 57.5
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 1944.5 1837 59.7
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1932.9 1465 69.7
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1921.7 1822 56.9
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1898.2 1889 56.8
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1881.7 1536 65.1
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1874.8 1497 66.5
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1850.1 1873 55.2
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1762.7 1702 56.3
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1699.5 1348 66.6
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1656.0 1464 59.5
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1638.6 1766 52.7
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1611.3 1571 56.7
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1456.0 1381 57.8
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1427.9 1780 46.5
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1373.2 1227 62.1
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1346.6 1755 44.3
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1325.8 1730 44.8
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1295.4 1731 43.7
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1291.2 984 72.4
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1192.2 1026 61.4
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.6e-301 1040.4 994 58.4
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.5e-299 1033.9 1080 51.6
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 1.7e-287 993.8 1515 40.6
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 2.8e-282 976.5 898 59.0
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 4.5e-256 889.4 798 61.0
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 2.1e-245 854.0 646 67.5
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 3.4e-219 766.9 651 62.2
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.4e-195 687.2 905 45.2
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 1.1e-177 629.0 509 65.4
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 6.5e-170 603.2 567 59.6
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.9e-166 591.7 731 45.8
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 1.0e-162 579.3 482 63.1
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 5.7e-158 563.5 484 64.5
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 6.3e-141 506.9 437 60.2
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.6e-139 501.5 511 51.1
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 3.2e-137 494.6 560 52.7
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 2.7e-136 491.5 486 57.4
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.8e-127 462.2 456 57.9
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 2.3e-122 445.3 430 57.2
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 4.9e-117 427.6 371 61.7
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 1.1e-95 356.7 295 64.4
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 4.4e-94 351.3 375 50.7
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.4e-92 346.3 283 62.5
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 1.6e-91 342.8 431 47.3
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 8.6e-90 337.0 325 56.9
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 7.8e-83 313.9 313 57.5
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 3.8e-77 295.0 1546 23.6
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 2.7e-59 235.7 297 46.1
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 6.9e-47 194.5 188 55.9
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 7.7e-46 191.0 534 29.4
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 6.5e-45 188.0 398 35.4
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 4.2e-44 185.3 119 76.5
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 3.6e-43 182.2 245 48.2
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 6.1e-43 181.4 232 46.6
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 3.3e-41 175.6 157 64.3
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 3.7e-40 172.2 173 56.6
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 1.3e-29 137.1 117 57.3
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 4.2e-28 132.1 98 65.3
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 6.1e-27 128.3 70 88.6
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 4.4e-25 122.1 102 63.7
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 5.7e-25 121.7 96 62.5
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 3.7e-24 119.0 97 60.8
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 8.2e-24 117.9 169 43.2
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 1.8e-23 116.7 78 74.4
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 1.8e-23 116.7 113 54.0
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 2.4e-23 116.3 205 39.0
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 9.1e-23 114.4 77 75.3
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 1.2e-22 114.0 100 61.0
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 2.6e-22 112.8 78 70.5
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 4.5e-22 112.1 74 75.7
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 1.0e-21 110.9 81 67.9
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 2.9e-21 109.4 74 75.7
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 9.4e-20 104.4 90 64.4
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 3.6e-19 102.4 71 71.8
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 4.4e-17 95.5 81 59.3
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 1.4e-15 90.5 48 89.6
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.8e-15 90.1 59 74.6
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 2.4e-15 89.7 114 47.4
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 9.1e-15 87.8 125 41.6
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 3.5e-14 85.9 61 68.9
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 3.8e-13 82.4 108 46.3
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 7.2e-12 78.2 122 41.0
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 8.0e-11 74.7 67 53.7
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 8.0e-11 74.7 67 53.7
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 8.0e-11 74.7 53 71.7
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 8.0e-11 74.7 259 24.7
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 3.0e-10 72.8 67 52.2
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 3.0e-10 72.8 91 46.2
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 5.7e-09 68.6 150 26.7
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 7.5e-09 68.2 152 32.9
PSO013G0049 Papaver somniferum HOM05D003939 ORTHO05D013368 3.5e-06 59.3 69 44.9


User provided reference genes

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