Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g17120 Coffea canephora HOM05D004387 ORTHO05D005218 7.7e-68 260.4 135 100.0
Cc07_g20870 Coffea canephora HOM05D004387 ORTHO05D005218 1.2e-63 246.5 130 96.9
Lju124A41T49 Lonicera japonica HOM05D004387 ORTHO05D005218 6.4e-54 214.2 132 81.8
Dinv39602 Davidia involucrata HOM05D004387 ORTHO05D005218 8.3e-54 213.8 130 82.3
Actinidia17236 Actinidia chinensis HOM05D004387 ORTHO05D005218 1.4e-53 213.0 127 84.3
Rhsim09G0155500 Rhododendron simsii HOM05D004387 ORTHO05D005218 2.4e-53 212.2 129 82.9
CSS0003189 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 3.2e-53 211.8 125 84.0
Dinv12482 Davidia involucrata HOM05D004387 ORTHO05D005218 3.2e-53 211.8 130 80.8
Actinidia38546 Actinidia chinensis HOM05D004387 ORTHO05D005218 9.2e-53 210.3 127 83.5
Oeu017945.1 Olea europaea HOM05D004387 ORTHO05D005218 1.6e-52 209.5 132 80.3
MSTRG.10813 Avicennia marina HOM05D004387 ORTHO05D005218 2.7e-52 208.8 125 81.6
ClCG04G000130 Citrullus lanatus HOM05D004387 ORTHO05D005218 6.0e-52 207.6 124 83.9
Migut.K00090 Erythranthe guttata HOM05D004387 ORTHO05D005218 7.8e-52 207.2 132 78.8
CsaV3_4G011700 Cucumis sativus L. HOM05D004387 ORTHO05D005218 1.3e-51 206.5 124 83.1
ECA248G3203 Erigeron canadensis HOM05D004387 ORTHO05D005218 1.3e-51 206.5 126 79.4
CiPaw.09G038200 Carya illinoinensis HOM05D004387 ORTHO05D005218 1.7e-51 206.1 123 85.4
MELO3C023136.2 Cucumis melo HOM05D004387 ORTHO05D005218 1.7e-51 206.1 124 83.1
Sed0012804 Sechium edule HOM05D004387 ORTHO05D005218 6.6e-51 204.1 123 80.5
Gohir.D01G090600 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.9e-50 202.6 128 81.2
Peaxi162Scf00354g00222 Petunia axillaris HOM05D004387 ORTHO05D005218 1.9e-50 202.6 132 79.5
Cfa006454 Carpinus fangiana HOM05D004387 ORTHO05D005218 3.3e-50 201.8 123 83.7
Manes.08G050500 Manihot esculenta HOM05D004387 ORTHO05D005218 5.6e-50 201.1 124 81.5
QL02p103266 Quercus lobata HOM05D004387 ORTHO05D005218 5.6e-50 201.1 124 80.6
Lalb_Chr20g0110501 Lupinus albus HOM05D004387 ORTHO05D005218 1.2e-49 199.9 122 82.0
Thecc.05G153400 Theobroma cacao HOM05D004387 ORTHO05D005218 1.2e-49 199.9 128 79.7
Gohir.A01G009000 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.6e-49 199.5 128 79.7
Gohir.A02G158900 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.6e-49 199.5 131 78.6
Lsat_1_v5_gn_5_161440 Lactuca sativa HOM05D004387 ORTHO05D005218 2.1e-49 199.1 125 79.2
Cfa016818 Carpinus fangiana HOM05D004387 ORTHO05D005218 2.8e-49 198.7 123 82.9
Duzib093G1767 Durio zibethinus HOM05D004387 ORTHO05D005218 2.8e-49 198.7 124 79.8
Sopen10g030740 Solanum pennellii HOM05D004387 ORTHO05D005218 2.8e-49 198.7 132 77.3
TAR633G2397 Trochodendron aralioides HOM05D004387 ORTHO05D005218 2.8e-49 198.7 130 77.7
Glyma.14G145600 Glycine max HOM05D004387 ORTHO05D005218 3.6e-49 198.4 122 81.1
Sabra06G0035900 Salix brachista HOM05D004387 ORTHO05D005218 3.6e-49 198.4 126 79.4
Solyc06g075390.4 Solanum lycopersicum HOM05D004387 ORTHO05D005218 3.6e-49 198.4 132 77.3
Sopen06g031800 Solanum pennellii HOM05D004387 ORTHO05D005218 3.6e-49 198.4 132 77.3
vmacro09074 Vaccinium macrocarpon HOM05D004387 ORTHO05D005218 3.6e-49 198.4 125 80.0
Lalb_Chr01g0017301 Lupinus albus HOM05D004387 ORTHO05D005218 4.7e-49 198.0 122 82.0
Nitab4.5_0004587g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 8.1e-49 197.2 132 77.3
DCAR_013603 Daucus carota HOM05D004387 ORTHO05D005218 1.1e-48 196.8 125 78.4
Glyma.08G246800 Glycine max HOM05D004387 ORTHO05D005218 1.1e-48 196.8 119 82.4
PGSC0003DMG400007507 Solanum tuberosum HOM05D004387 ORTHO05D005218 1.1e-48 196.8 132 76.5
Atru.chr1.1097 Acer truncatum HOM05D004387 ORTHO05D005218 1.4e-48 196.4 122 81.1
TWI77G0383 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 1.4e-48 196.4 124 79.0
Nitab4.5_0009442g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 1.8e-48 196.1 132 76.5
Potri.016G055600 Populus trichocarpa HOM05D004387 ORTHO05D005218 1.8e-48 196.1 123 81.3
SGA_v2.0_scaffold94G28486 Striga asiatica HOM05D004387 ORTHO05D005218 1.8e-48 196.1 126 80.2
GSVIVG01033276001 Vitis vinifera HOM05D004387 ORTHO05D005218 2.3e-48 195.7 130 76.2
Aa31LG2G10160 Aethionema arabicum HOM05D004387 ORTHO05D005218 3.1e-48 195.3 127 75.6
Ciclev10005512m.g Citrus clementina HOM05D004387 ORTHO05D005218 3.1e-48 195.3 122 78.7
CAN.G128.9 Capsicum annuum HOM05D004387 ORTHO05D005218 4.0e-48 194.9 132 75.0
AUR62026038 Chenopodium quinoa HOM05D004387 ORTHO05D005218 4.0e-48 194.9 130 70.0
SGA_v2.0_scaffold273G46436 Striga asiatica HOM05D004387 ORTHO05D005218 4.0e-48 194.9 118 83.1
CAN.G1001.5 Capsicum annuum HOM05D004387 ORTHO05D005218 5.2e-48 194.5 132 76.5
HanXRQChr01g0008751 Helianthus annuus HOM05D004387 ORTHO05D005218 5.2e-48 194.5 119 80.7
HanXRQChr06g0178491 Helianthus annuus HOM05D004387 ORTHO05D005218 6.8e-48 194.1 119 81.5
Lj6g0019382 Lotus japonicus HOM05D004387 ORTHO05D005218 6.8e-48 194.1 122 81.1
AT1G60080 Arabidopsis thaliana HOM05D004387 ORTHO05D005218 8.9e-48 193.7 127 74.0
EL10Ac3g07090 Beta vulgaris HOM05D004387 ORTHO05D005218 8.9e-48 193.7 133 68.4
CANSAT21G1698 Cannabis sativa HOM05D004387 ORTHO05D005218 1.2e-47 193.4 127 76.4
AL2G16570 Arabidopsis lyrata HOM05D004387 ORTHO05D005218 1.5e-47 193.0 127 73.2
Nn2g15223 Nelumbo nucifera HOM05D004387 ORTHO05D005218 1.5e-47 193.0 130 72.3
THA.LOC104823663 Tarenaya hassleriana HOM05D004387 ORTHO05D005218 1.5e-47 193.0 124 75.8
Ah.13g076470 Amaranthus hybridus HOM05D004387 ORTHO05D005218 2.0e-47 192.6 127 71.7
MBI11_g09466_MAGBIO Magnolia biondii HOM05D004387 ORTHO05D005218 2.0e-47 192.6 123 77.2
Potri.006G051200 Populus trichocarpa HOM05D004387 ORTHO05D005218 2.0e-47 192.6 123 80.5
VMungo0331G1303 Vigna mungo HOM05D004387 ORTHO05D005218 2.0e-47 192.6 122 77.9
CSS0010572 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 2.6e-47 192.2 130 73.1
CARHR052860 Cardamine hirsuta HOM05D004387 ORTHO05D005218 3.4e-47 191.8 127 73.2
Nitab4.5_0005483g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 3.4e-47 191.8 132 75.0
Phvul.011G181200 Phaseolus vulgaris HOM05D004387 ORTHO05D005218 4.4e-47 191.4 119 79.0
AUR62024448 Chenopodium quinoa HOM05D004387 ORTHO05D005218 5.8e-47 191.0 127 70.1
Medtr1g007060 Medicago truncatula HOM05D004387 ORTHO05D005218 5.8e-47 191.0 124 79.0
RcHm_v2.0_Chr3g0482341 Rosa chinensis HOM05D004387 ORTHO05D005218 9.8e-47 190.3 127 77.2
COL.COLO4_28283 Corchorus olitorius HOM05D004387 ORTHO05D005218 1.3e-46 189.9 123 80.5
Thhalv10023611m.g Eutrema salsugineum HOM05D004387 ORTHO05D005218 1.3e-46 189.9 122 74.6
Psat6g037480 Pisum sativum HOM05D004387 ORTHO05D005218 1.3e-46 189.9 119 80.7
Aqoxy5G00267 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 2.9e-46 188.7 124 75.0
Ca_03365_v3 Cicer arietinum L. HOM05D004387 ORTHO05D005218 4.9e-46 188.0 119 79.8
Hund05284 Selenicereus undatus HOM05D004387 ORTHO05D005218 8.3e-46 187.2 123 75.6
A09p17690 Brassica napus HOM05D004387 ORTHO05D005218 1.1e-45 186.8 119 74.8
BraA09t37397Z Brassica rapa HOM05D004387 ORTHO05D005218 1.1e-45 186.8 119 74.8
TPR.G24500 Trifolium pratense HOM05D004387 ORTHO05D005218 1.1e-45 186.8 119 79.0
Sp2g04520 Schrenkiella parvula HOM05D004387 ORTHO05D005218 1.9e-45 186.0 123 74.0
BNapus_Darmor_BZH_scaffold_155p00060 Brassica napus HOM05D004387 ORTHO05D005218 2.4e-45 185.7 119 73.9
C09p22030 Brassica napus HOM05D004387 ORTHO05D005218 2.4e-45 185.7 119 73.9
BolC9t55109H Brassica oleracea HOM05D004387 ORTHO05D005218 2.4e-45 185.7 119 73.9
MD12G1073800 Malus domestica HOM05D004387 ORTHO05D005218 3.2e-45 185.3 132 73.5
Prupe.7G061000 Prunus persica HOM05D004387 ORTHO05D005218 3.2e-45 185.3 123 78.0
FAN02G2904 Fragaria x ananassa HOM05D004387 ORTHO05D005218 4.1e-45 184.9 124 76.6
TWI74G1664 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 4.1e-45 184.9 124 73.4
BcaC04g22217 Brassica carinata HOM05D004387 ORTHO05D005218 5.4e-45 184.5 119 73.1
BcaB07g31201 Brassica carinata HOM05D004387 ORTHO05D005218 7.1e-45 184.1 122 73.0
PSO357G0544 Papaver somniferum HOM05D004387 ORTHO05D005218 7.1e-45 184.1 129 67.4
Carub.0002s0514 Capsella rubella HOM05D004387 ORTHO05D005218 1.2e-44 183.3 127 70.9
unitig_46.g18442 Utricularia gibba HOM05D004387 ORTHO05D005218 2.1e-44 182.6 156 64.7
FAN05G1657 Fragaria x ananassa HOM05D004387 ORTHO05D005218 3.5e-44 181.8 124 75.0
Eucgr.A00059 Eucalyptus grandis HOM05D004387 ORTHO05D005218 6.0e-44 181.0 124 71.8
FAN14G1242 Fragaria x ananassa HOM05D004387 ORTHO05D005218 7.8e-44 180.6 124 75.0
FvH4_6g23810 Fragaria vesca HOM05D004387 ORTHO05D005218 2.3e-43 179.1 122 75.4
CSS0027602 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 3.0e-43 178.7 130 70.0
PSO170G6628 Papaver somniferum HOM05D004387 ORTHO05D005218 3.0e-43 178.7 124 68.5
PGR142G2016 Punica granatum HOM05D004387 ORTHO05D005218 5.6e-42 174.5 129 69.8
HPP92_019752 Vanilla planifolia HOM05D004387 ORTHO05D005218 7.3e-42 174.1 123 68.3
Aqoxy2G02875 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 9.5e-42 173.7 127 67.7
Eucgr.A00267 Eucalyptus grandis HOM05D004387 ORTHO05D005218 9.5e-42 173.7 123 70.7
CSS0024704 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 2.1e-41 172.6 118 72.0
Eucgr.A00265 Eucalyptus grandis HOM05D004387 ORTHO05D005218 8.1e-41 170.6 123 70.7
Eucgr.A00063 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.4e-40 169.9 120 68.3
FAN09G3586 Fragaria x ananassa HOM05D004387 ORTHO05D005218 1.8e-40 169.5 128 70.3
Lj4g0008518 Lotus japonicus HOM05D004387 ORTHO05D005218 2.6e-39 165.6 122 72.1
Gorai.002G116000 Gossypium raimondii HOM05D004387 ORTHO05D005218 4.4e-39 164.9 131 69.5
CSS0001525 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 9.9e-39 163.7 111 77.5
ATR0626G351 Amborella trichopoda HOM05D004387 ORTHO05D005218 1.3e-38 163.3 120 65.8
Gohir.D01G090850 Gossypium hirsutum HOM05D004387 ORTHO05D005218 4.9e-38 161.4 127 67.7
Cpa.g.sc3.336 Carica papaya HOM05D004387 ORTHO05D005218 3.2e-37 158.7 122 68.0
CDE04G2438 Ceratophyllum demersum HOM05D004387 ORTHO05D005218 1.6e-36 156.4 126 64.3
Zm00001eb317600 Zea mays HOM05D004387 ORTHO05D005218 4.6e-36 154.8 127 61.4
Zm00001eb036840 Zea mays HOM05D004387 ORTHO05D005218 1.0e-35 153.7 125 60.0
Zm00001eb175450 Zea mays HOM05D004387 ORTHO05D005218 3.9e-35 151.8 130 57.7
SEGI_29832 Sequoiadendron giganteum HOM05D004387 ORTHO05D005218 5.1e-35 151.4 122 60.7
Pp3c19_14820 Physcomitrium patens HOM05D004387 ORTHO05D005218 1.1e-34 150.2 124 58.1
Mapoly0071s0030 Marchantia polymorpha HOM05D004387 ORTHO05D005218 2.8e-33 145.6 140 54.3
Os11g0311300 Oryza sativa ssp. japonica HOM05D004387 ORTHO05D005218 8.1e-33 144.1 112 61.6
SMO169G0201 Selaginella moellendorffii HOM05D004387 ORTHO05D005218 8.1e-33 144.1 119 58.0
arahy.Tifrunner.gnm1.ann1.02RJAW Arachis hypogaea HOM05D004387 ORTHO05D005218 9.9e-31 137.1 88 77.3
arahy.Tifrunner.gnm1.ann1.QD816I Arachis hypogaea HOM05D004387 ORTHO05D005218 9.9e-31 137.1 88 77.3
Gohir.D01G090350 Gossypium hirsutum HOM05D004387 ORTHO05D005218 2.4e-29 132.5 90 72.2
Sc13g0001750 Simmondsia chinensis HOM05D004387 ORTHO05D005218 4.2e-29 131.7 86 76.7
Zm00001eb161840 Zea mays HOM05D004387 ORTHO05D005218 7.1e-29 131.0 102 60.8
Gorai.002G010400 Gossypium raimondii HOM05D004387 ORTHO05D005218 3.0e-27 125.6 86 75.6
PGSC0003DMG400023725 Solanum tuberosum HOM05D004387 ORTHO05D005218 1.5e-26 123.2 83 75.9
Eucgr.A00069 Eucalyptus grandis HOM05D004387 ORTHO05D005218 6.2e-25 117.9 103 63.1
Gohir.D01G008666 Gossypium hirsutum HOM05D004387 ORTHO05D005218 9.3e-21 104.0 61 82.0
Cre10.g440900 Chlamydomonas reinhardtii HOM05D004387 ORTHO05D005218 1.2e-20 103.6 126 38.1
Hma1.2p1_0953F.1_g241060 Hydrangea macrophylla HOM05D004387 ORTHO05D005218 1.6e-20 103.2 61 83.6
Haze_01634 Corylus avellana HOM05D004387 ORTHO05D005218 5.6e-18 94.7 62 75.8
Haze_19856 Corylus avellana HOM05D004387 ORTHO05D005218 7.4e-18 94.4 89 62.9
EL10Ac3g05398 Beta vulgaris HOM05D004387 ORTHO05D005218 8.1e-17 90.9 59 72.9
CBR_g20981 Chara braunii HOM05D004387 ORTHO05D005218 3.1e-16 89.0 100 50.0
Eucgr.A00266 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.5e-15 86.7 127 43.3
CBR_g41407 Chara braunii HOM05D004387 ORTHO05D005218 5.1e-11 71.6 90 44.4
CDE07G0852 Ceratophyllum demersum HOM05D004387 ORTHO05D005218 2.6e-07 59.3 59 47.5
Dinv26619 Davidia involucrata HOM05D002238 ORTHO05D001984 3.4e-07 58.9 121 30.6
Nn7g36292 Nelumbo nucifera HOM05D004387 ORTHO05D005218 2.2e-06 56.2 44 56.8
Sc13g0001760 Simmondsia chinensis HOM05D004387 ORTHO05D005218 2.2e-06 56.2 29 86.2
PGSC0003DMG400012510 Solanum tuberosum HOM05D002238 ORTHO05D001984 2.2e-06 56.2 113 31.0
Solyc08g007520.4 Solanum lycopersicum HOM05D002238 ORTHO05D001984 2.9e-06 55.8 119 29.4
Glyma.18G267600 Glycine max HOM05D004387 ORTHO05D005218 3.8e-06 55.5 29 86.2
HanXRQChr17g0537591 Helianthus annuus HOM05D002238 ORTHO05D001984 6.5e-06 54.7 113 31.9
Sopen08g003480 Solanum pennellii HOM05D002238 ORTHO05D001984 6.5e-06 54.7 113 30.1
Potri.014G166200 Populus trichocarpa HOM05D002238 ORTHO05D001984 8.4e-06 54.3 105 34.3


User provided reference genes

Program Settings