Gene: Solyc06g075390.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g075390.4
  • Transcript Identifier Solyc06g075390.4.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 44460740-44466258 : negative

Gene Family Information

  • ID HOM05D004387
  • #Genes/#Species 163/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g075390.4.1
  • uniprot A0A3Q7H3T3
  • gene_id Solyc06g075390

Descriptions

  • Description Exosome complex component RRP43 (AHRD V3.3 *** A0A2U1QHR4_ARTAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071028
IBA
GOA Databasenuclear mRNA surveillance
GO:0071035
IBA
GOA Databasenuclear polyadenylation-dependent rRNA catabolic process
GO:0071038
IBA
GOA Databasenuclear polyadenylation-dependent tRNA catabolic process
GO:0071042
IBA
GOA Databasenuclear polyadenylation-dependent mRNA catabolic process
GO:0043928
IBA
GOA Databaseexonucleolytic catabolism of deadenylated mRNA
GO:0016075
IBA
GOA DatabaserRNA catabolic process
GO:0034427
IBA
GOA Databasenuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034473
IBA
GOA DatabaseU1 snRNA 3'-end processing
GO:0034475
IBA
GOA DatabaseU4 snRNA 3'-end processing
GO:0034476
IBA
GOA DatabaseU5 snRNA 3'-end processing
GO:0000467
IBA
GOA Databaseexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000177
IBA
GOA Databasecytoplasmic exosome (RNase complex)
GO:0000176
IBA
GOA Databasenuclear exosome (RNase complex)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G60080

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001247 Exoribonuclease, phosphorolytic domain 1
IPR015847 Exoribonuclease, phosphorolytic domain 2
IPR027408 PNPase/RNase PH domain superfamily
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR036345 Exoribonuclease, PH domain 2 superfamily
Mapman id Description
16.4.1.1.4 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP43