Gene: Pp3c19_14820
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c19_14820
- Transcript Identifier Pp3c19_14820V3.1
- Gene Type Coding gene
- Location Chr19 : 9811304-9813691 : positive
Gene Family Information
- ID HOM05D004387
- #Genes/#Species 163/97
- Phylogenetic origin
- ID ORTHO05D005218
- #Genes/#Species 162/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name Pp3c19_14820V3.1
- pacid 32937990
- alias Pp1s20_190V6
- alias Phpat.019G050400
- alias Phypa_176915
- uniprot A9RPF4
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0034427 | IBA | GOA Database | nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | |
| GO:0071028 | IBA | GOA Database | nuclear mRNA surveillance | |
| GO:0071035 | IBA | GOA Database | nuclear polyadenylation-dependent rRNA catabolic process | |
| GO:0071038 | IBA | GOA Database | nuclear polyadenylation-dependent tRNA catabolic process | |
| GO:0071042 | IBA | GOA Database | nuclear polyadenylation-dependent mRNA catabolic process | |
| GO:0043928 | IBA | GOA Database | exonucleolytic catabolism of deadenylated mRNA | |
| GO:0016075 | IBA | GOA Database | rRNA catabolic process | |
| GO:0034473 | IBA | GOA Database | U1 snRNA 3'-end processing | |
| GO:0034475 | IBA | GOA Database | U4 snRNA 3'-end processing | |
| GO:0034476 | IBA | GOA Database | U5 snRNA 3'-end processing | |
| GO:0000467 | IBA | GOA Database | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | |
| GO:0006401 | IEA | GOA Database | RNA catabolic process | |
| GO:0006401 | IEA | InterPro | RNA catabolic process | |
| GO:0006396 | IEA | GOA Database | RNA processing | |
| GO:0006396 | IEA | InterPro | RNA processing |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | IEA | GOA Database | cytosol | |
| GO:0000177 | IBA | GOA Database | cytoplasmic exosome (RNase complex) | |
| GO:0000176 | IBA | GOA Database | nuclear exosome (RNase complex) | |
| GO:0000178 | IEA | GOA Database | exosome (RNase complex) | |
| GO:0000178 | IEA | InterPro | exosome (RNase complex) |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027408 | PNPase/RNase PH domain superfamily |
| IPR015847 | Exoribonuclease, phosphorolytic domain 2 |
| IPR020568 | Ribosomal protein S5 domain 2-type fold |
| IPR001247 | Exoribonuclease, phosphorolytic domain 1 |
| IPR036345 | Exoribonuclease, PH domain 2 superfamily |
| IPR033196 | Exosome complex component Rrp43 |
| Mapman id | Description |
|---|---|
| 16.4.1.1.4 | RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP43 |