Gene: AT1G60080

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G60080
  • Transcript Identifier AT1G60080.1
  • Gene Type Coding gene
  • Location Chr1 : 22152605-22154339 : negative

Gene Family Information

  • ID HOM05D004387
  • #Genes/#Species 163/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G60080.1
  • uniprot Q9ZUI4

Descriptions

  • Description 3'-5'-exoribonuclease family protein
  • Computational description 3'-5'-exoribonuclease family protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: ribonuclease PH45A (TAIR:AT3G12990.3); Has 1508 Blast hits to 1508 proteins in 331 species: Archae - 402; Bacteria - 40; Metazoa - 363; Fungi - 232; Plants - 181; Viruses - 0; Other Eukaryotes - 290 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034427
IBA
Gene Ontologynuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1
GO:0034476
IBA
Gene OntologyU5 snRNA 3'-end processing1
GO:0043928
IBA
Gene Ontologyexonucleolytic catabolism of deadenylated mRNA1
GO:0071028
IBA
Gene Ontologynuclear mRNA surveillance1
GO:0000467
IBA
Gene Ontologyexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)1
GO:0034473
IBA
Gene OntologyU1 snRNA 3'-end processing1
GO:0071038
IBA
Gene Ontologynuclear polyadenylation-dependent tRNA catabolic process1
GO:0034475
IBA
Gene OntologyU4 snRNA 3'-end processing1
GO:0071042
IBA
Gene Ontologynuclear polyadenylation-dependent mRNA catabolic process1
GO:0071035
IBA
Gene Ontologynuclear polyadenylation-dependent rRNA catabolic process1
GO:0016075
IBA
Gene OntologyrRNA catabolic process1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0000177
IBA
Gene Ontologycytoplasmic exosome (RNase complex)1
GO:0000176
IBA
Gene Ontologynuclear exosome (RNase complex)1
GO:0005829
IDA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036345 Exoribonuclease, PH domain 2 superfamily
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR001247 Exoribonuclease, phosphorolytic domain 1
IPR015847 Exoribonuclease, phosphorolytic domain 2
IPR027408 PNPase/RNase PH domain superfamily
Mapman id Description
16.4.1.1.4 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP43