Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 1.6e-93 346.3 203 100.0
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 1.4e-81 306.6 204 89.2
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 2.4e-81 305.8 203 88.7
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 1.0e-79 300.4 204 87.3
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 1.7e-79 299.7 204 86.8
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 1.7e-79 299.7 204 87.7
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 5.6e-78 294.7 205 85.4
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 4.7e-77 291.6 203 86.2
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 4.7e-77 291.6 203 86.2
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 1.1e-76 290.4 203 85.7
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 1.4e-76 290.0 203 84.2
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 1.4e-76 290.0 203 84.2
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 1.8e-76 289.7 205 86.8
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 1.8e-76 289.7 204 85.3
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 3.1e-76 288.9 205 84.9
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 4.0e-76 288.5 203 87.2
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 6.8e-76 287.7 203 83.3
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 3.4e-75 285.4 203 82.8
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 4.4e-75 285.0 203 84.2
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 7.5e-75 284.3 196 87.2
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 1.7e-74 283.1 202 85.1
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 2.9e-74 282.3 205 83.4
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 6.4e-74 281.2 204 83.3
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 8.3e-74 280.8 204 83.3
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 1.4e-73 280.0 204 81.9
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.9e-73 279.6 205 83.9
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 2.4e-73 279.3 203 82.8
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 3.2e-73 278.9 204 81.9
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 2.7e-72 275.8 205 81.0
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 2.7e-72 275.8 200 82.5
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 3.5e-72 275.4 203 82.3
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 4.6e-72 275.0 204 79.9
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 4.6e-72 275.0 204 82.8
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 6.0e-72 274.6 205 82.0
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 6.0e-72 274.6 203 82.8
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 7.8e-72 274.2 204 81.4
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 1.0e-71 273.9 204 81.9
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 1.0e-71 273.9 204 81.9
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 3.9e-71 271.9 195 84.6
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 3.9e-71 271.9 203 81.8
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 3.9e-71 271.9 205 82.9
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 5.1e-71 271.6 247 70.0
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 8.6e-71 270.8 201 82.6
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 1.1e-70 270.4 199 80.4
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 1.1e-70 270.4 204 82.4
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 1.5e-70 270.0 197 79.7
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 1.5e-70 270.0 202 83.2
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 1.5e-70 270.0 199 81.4
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.5e-70 270.0 203 82.3
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 1.5e-70 270.0 207 80.7
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.5e-70 269.2 205 80.5
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 2.5e-70 269.2 201 82.6
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 2.5e-70 269.2 201 82.6
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 4.3e-70 268.5 199 78.9
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 5.6e-70 268.1 199 80.4
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 7.3e-70 267.7 194 83.5
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 7.3e-70 267.7 204 80.9
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 9.5e-70 267.3 201 81.1
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 9.5e-70 267.3 201 82.1
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 1.2e-69 266.9 204 81.4
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 1.6e-69 266.5 204 81.4
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 1.6e-69 266.5 204 82.4
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 1.6e-69 266.5 202 78.7
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 2.1e-69 266.2 196 82.7
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 3.6e-69 265.4 200 81.0
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 4.7e-69 265.0 205 79.5
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 6.2e-69 264.6 204 78.9
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 8.1e-69 264.2 204 80.9
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 8.1e-69 264.2 204 80.9
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 1.1e-68 263.8 204 77.0
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 1.4e-68 263.5 204 79.9
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 1.4e-68 263.5 203 79.8
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 3.1e-68 262.3 199 78.4
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.1e-68 262.3 210 77.1
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.1e-68 262.3 210 77.1
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 3.1e-68 262.3 201 82.6
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 8.9e-68 260.8 210 76.7
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 8.9e-68 260.8 205 72.2
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 1.2e-67 260.4 199 78.9
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.2e-67 260.4 204 78.4
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 2.0e-67 259.6 200 79.5
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 3.4e-67 258.8 203 79.3
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 7.6e-67 257.7 200 80.0
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 7.6e-67 257.7 202 82.2
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 9.9e-67 257.3 204 78.9
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.7e-66 256.5 204 78.9
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 1.7e-66 256.5 199 76.4
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 2.2e-66 256.1 199 76.9
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 6.4e-66 254.6 199 80.4
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 1.1e-65 253.8 199 75.9
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 1.4e-65 253.4 198 77.8
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 5.4e-65 251.5 202 78.7
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 1.3e-63 246.9 198 76.3
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 3.0e-63 245.7 200 79.0
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 3.0e-63 245.7 200 79.0
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 8.6e-63 244.2 200 77.0
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 3.6e-61 238.8 275 60.4
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 3.6e-61 238.8 197 74.6
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 6.2e-61 238.0 161 88.8
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 6.2e-61 238.0 203 73.9
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 8.1e-61 237.7 153 81.0
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 1.4e-60 236.9 204 75.5
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 2.4e-60 236.1 171 86.0
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 1.2e-59 233.8 156 80.1
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 4.4e-59 231.9 211 62.1
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 5.8e-59 231.5 195 76.4
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 9.3e-57 224.2 293 56.3
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 2.1e-56 223.0 197 74.1
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.3e-55 220.3 202 67.3
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 6.6e-55 218.0 149 71.1
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 3.3e-54 215.7 204 61.8
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 5.6e-54 214.9 203 70.0
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.6e-53 212.2 196 73.0
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 3.1e-52 209.1 145 69.7
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 4.4e-51 205.3 223 65.9
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.3e-50 203.8 135 74.1
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 1.4e-49 200.3 203 62.6
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 9.3e-49 197.6 107 89.7
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.4e-44 183.0 147 72.1
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 4.0e-44 182.2 158 76.6
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.6e-40 170.2 123 88.6
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.0e-39 167.5 211 62.6
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 2.3e-39 166.4 141 65.2
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.1e-38 164.1 125 73.6
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 2.1e-37 159.8 224 46.4
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.5e-35 153.7 284 48.6
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 1.5e-30 137.1 227 48.9
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 4.3e-30 135.6 203 44.3
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 7.9e-24 114.8 212 46.2
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.5e-22 110.5 148 45.9
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 9.0e-20 101.3 96 78.1
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 9.4e-17 91.3 213 37.1
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 9.4e-17 91.3 91 78.0
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 2.0e-11 73.6 46 82.6
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 2.9e-10 69.7 160 28.8


User provided reference genes

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