Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g33860 Coffea canephora HOM05D003070 ORTHO05D003567 3.9e-19 97.4 61 100.0
Cc07_g21150 Coffea canephora HOM05D003070 ORTHO05D003567 7.7e-15 83.2 61 70.5
Cc07_g21140 Coffea canephora HOM05D003070 ORTHO05D003567 2.9e-14 81.3 61 72.1
Eucgr.C04084 Eucalyptus grandis HOM05D003070 ORTHO05D003567 3.8e-14 80.9 61 85.2
Potri.005G251100 Populus trichocarpa HOM05D003070 ORTHO05D003567 6.5e-14 80.1 61 67.2
Sabra05G0194200 Salix brachista HOM05D003070 ORTHO05D003567 1.9e-13 78.6 61 65.6
Sabra05G0194500 Salix brachista HOM05D003070 ORTHO05D003567 1.9e-13 78.6 61 65.6
PGR031G0751 Punica granatum HOM05D003070 ORTHO05D003567 3.2e-13 77.8 61 67.2
unitig_22.g6031 Utricularia gibba HOM05D001030 ORTHO05D002278 3.2e-13 77.8 61 83.6
CSS0043026 Camellia sinensis var. sinensis HOM05D003070 ORTHO05D003567 4.2e-13 77.4 61 63.9
Cc07_g21100 Coffea canephora HOM05D003070 ORTHO05D003567 4.2e-13 77.4 61 65.6
TWI56G1280 Tripterygium wilfordii HOM05D003070 ORTHO05D003567 4.2e-13 77.4 61 68.9
Actinidia28603 Actinidia chinensis HOM05D003070 ORTHO05D003567 5.5e-13 77.0 60 63.3
Cfa014085 Carpinus fangiana HOM05D003070 ORTHO05D003567 5.5e-13 77.0 61 85.2
CiPaw.08G073600 Carya illinoinensis HOM05D003070 ORTHO05D003567 5.5e-13 77.0 61 85.2
Haze_22786 Corylus avellana HOM05D003070 ORTHO05D003567 5.5e-13 77.0 61 85.2
Dinv31947 Davidia involucrata HOM05D003070 ORTHO05D003567 5.5e-13 77.0 61 86.9
TWI12G0703 Tripterygium wilfordii HOM05D003070 ORTHO05D003567 9.4e-13 76.3 61 63.9
Aqoxy5G01037 Aquilegia oxysepala HOM05D003070 ORTHO05D003567 1.6e-12 75.5 61 83.6
DCAR_009533 Daucus carota HOM05D003070 ORTHO05D003567 1.6e-12 75.5 61 63.9
Potri.002G010200 Populus trichocarpa HOM05D003070 ORTHO05D003567 1.6e-12 75.5 61 63.9
Sabra02G0007600 Salix brachista HOM05D003070 ORTHO05D003567 1.6e-12 75.5 61 63.9
QL02p014285 Quercus lobata HOM05D003070 ORTHO05D003567 2.1e-12 75.1 60 83.3
Actinidia37920 Actinidia chinensis HOM05D003070 ORTHO05D003567 2.7e-12 74.7 61 82.0
CAN.G1671.3 Capsicum annuum HOM05D003070 ORTHO05D003567 3.6e-12 74.3 61 82.0
unitig_8.g3513 Utricularia gibba HOM05D001030 ORTHO05D003567 3.6e-12 74.3 61 82.0
TWI36G0363 Tripterygium wilfordii HOM05D003070 ORTHO05D003567 6.1e-12 73.6 61 73.8
TAR628G0460 Trochodendron aralioides HOM05D003070 ORTHO05D003567 6.1e-12 73.6 61 83.6
GSVIVG01013364001 Vitis vinifera HOM05D003070 ORTHO05D003567 6.1e-12 73.6 61 83.6
CiPaw.07G138300 Carya illinoinensis HOM05D003070 ORTHO05D003567 7.9e-12 73.2 61 80.3
Medtr8g092200 Medicago truncatula HOM05D003070 ORTHO05D003567 7.9e-12 73.2 61 77.0
Psat7g049720 Pisum sativum HOM05D003070 ORTHO05D003567 7.9e-12 73.2 61 77.0
TPR.G2168 Trifolium pratense HOM05D003070 ORTHO05D003567 7.9e-12 73.2 61 77.0
Peaxi162Scf00083g00716 Petunia axillaris HOM05D003070 ORTHO05D003567 1.0e-11 72.8 61 80.3
Actinidia17044 Actinidia chinensis HOM05D003070 ORTHO05D003567 1.4e-11 72.4 61 62.3
Solyc02g084020.3 Solanum lycopersicum HOM05D003070 ORTHO05D003567 1.4e-11 72.4 61 80.3
Sopen02g028820 Solanum pennellii HOM05D003070 ORTHO05D003567 1.4e-11 72.4 61 80.3
PGSC0003DMG400003559 Solanum tuberosum HOM05D003070 ORTHO05D003567 1.4e-11 72.4 61 80.3
Dinv05529 Davidia involucrata HOM05D003070 ORTHO05D003567 1.8e-11 72.0 61 83.6
MBI05_g07853_MAGBIO Magnolia biondii HOM05D003070 ORTHO05D003567 2.3e-11 71.6 62 83.9
MD15G1001300 Malus domestica HOM05D003070 ORTHO05D003567 2.3e-11 71.6 61 73.8
Actinidia15494 Actinidia chinensis HOM05D003070 ORTHO05D003567 3.0e-11 71.2 61 82.0
ClCG11G018690 Citrullus lanatus HOM05D003070 ORTHO05D003567 3.0e-11 71.2 61 65.6
Cc02_g33830 Coffea canephora HOM05D003070 ORTHO05D003567 3.9e-11 70.9 61 82.0
Cc07_g21080 Coffea canephora HOM05D003070 ORTHO05D003567 3.9e-11 70.9 61 82.0
Lj4A805T23 Lonicera japonica HOM05D003070 ORTHO05D003567 3.9e-11 70.9 61 80.3
Oeu033775.1 Olea europaea HOM05D003070 ORTHO05D003567 3.9e-11 70.9 61 82.0
SGA_v2.0_scaffold105G30448 Striga asiatica HOM05D003070 ORTHO05D003567 3.9e-11 70.9 63 81.0
AUR62012923 Chenopodium quinoa HOM05D003070 ORTHO05D003567 5.1e-11 70.5 61 62.3
Manes.05G133600 Manihot esculenta HOM05D003070 ORTHO05D003567 5.1e-11 70.5 61 63.9
Manes.05G133700 Manihot esculenta HOM05D003070 ORTHO05D003567 5.1e-11 70.5 61 63.9
TAR381G1070 Trochodendron aralioides HOM05D003070 ORTHO05D003567 6.7e-11 70.1 61 82.0
arahy.Tifrunner.gnm1.ann1.NVS6IC Arachis hypogaea HOM05D003070 ORTHO05D003567 8.8e-11 69.7 60 81.7
arahy.Tifrunner.gnm1.ann1.SVUP05 Arachis hypogaea HOM05D003070 ORTHO05D003567 8.8e-11 69.7 60 81.7
MSTRG.26110 Avicennia marina HOM05D003070 ORTHO05D003567 8.8e-11 69.7 61 82.0
Peaxi162Scf00010g00029 Petunia axillaris HOM05D003070 ORTHO05D003567 8.8e-11 69.7 61 78.7
SalBow6G1017 Salvia bowleyana HOM05D003070 ORTHO05D003567 8.8e-11 69.7 61 80.3
MSTRG.6449 Avicennia marina HOM05D003070 ORTHO05D003567 1.1e-10 69.3 61 80.3
MD08G1002200 Malus domestica HOM05D003070 ORTHO05D003567 1.1e-10 69.3 61 63.9
ATR0661G400 Amborella trichopoda HOM05D003070 ORTHO05D003567 1.5e-10 68.9 62 80.6
Manes.18G004900 Manihot esculenta HOM05D003070 ORTHO05D003567 1.5e-10 68.9 61 62.3
Nitab4.5_0012215g0010 Nicotiana tabacum HOM05D003070 ORTHO05D003567 1.5e-10 68.9 61 78.7
Migut.K00070 Erythranthe guttata HOM05D003070 ORTHO05D003567 2.0e-10 68.6 62 80.6
AUR62023608 Chenopodium quinoa HOM05D003070 ORTHO05D003567 2.6e-10 68.2 61 62.3
Nn5g30951 Nelumbo nucifera HOM05D003070 ORTHO05D003567 2.6e-10 68.2 61 78.7
Peaxi162Scf00439g01010 Petunia axillaris HOM05D003070 ORTHO05D003567 2.6e-10 68.2 61 77.0
HPP92_022158 Vanilla planifolia HOM05D003070 ORTHO05D003567 2.6e-10 68.2 61 80.3
SalBow1G1789 Salvia bowleyana HOM05D003070 ORTHO05D003567 3.3e-10 67.8 61 78.7
SalBow1G7550 Salvia bowleyana HOM05D003070 ORTHO05D003567 3.3e-10 67.8 61 78.7
Sed0009612 Sechium edule HOM05D003070 ORTHO05D003567 3.3e-10 67.8 61 78.7
SGA_v2.0_scaffold69G23095 Striga asiatica HOM05D003070 ORTHO05D003567 3.3e-10 67.8 62 66.1
AUR62011707 Chenopodium quinoa HOM05D003070 ORTHO05D003567 4.4e-10 67.4 61 60.7
Hma1.2p1_1100F.1_g256990 Hydrangea macrophylla HOM05D003070 ORTHO05D003567 4.4e-10 67.4 61 78.7
Hund00358 Selenicereus undatus HOM05D003070 ORTHO05D003567 4.4e-10 67.4 61 67.2
Ciclev10002830m.g Citrus clementina HOM05D003070 ORTHO05D003567 5.7e-10 67.0 61 77.0
PSO675G2974 Papaver somniferum HOM05D003070 ORTHO05D003567 5.7e-10 67.0 62 59.7
Lalb_Chr08g0246401 Lupinus albus HOM05D003070 ORTHO05D003567 7.4e-10 66.6 61 77.0
Ca_17677_v3 Cicer arietinum L. HOM05D003070 ORTHO05D003567 9.7e-10 66.2 61 80.3
Ca_29603_v3 Cicer arietinum L. HOM05D003070 ORTHO05D003567 9.7e-10 66.2 61 80.3
Glyma.05G185800 Glycine max HOM05D003070 ORTHO05D003567 9.7e-10 66.2 61 80.3
Glyma.08G143900 Glycine max HOM05D003070 ORTHO05D003567 9.7e-10 66.2 61 80.3
Nitab4.5_0004254g0060 Nicotiana tabacum HOM05D003070 ORTHO05D003567 9.7e-10 66.2 62 79.0
Phvul.002G266900 Phaseolus vulgaris HOM05D003070 ORTHO05D003567 9.7e-10 66.2 61 80.3
Solyc03g033600.3 Solanum lycopersicum HOM05D003070 ORTHO05D003567 9.7e-10 66.2 61 77.0
Sopen03g006380 Solanum pennellii HOM05D003070 ORTHO05D003567 9.7e-10 66.2 61 77.0
THA.LOC104811465 Tarenaya hassleriana HOM05D003070 ORTHO05D003567 9.7e-10 66.2 61 62.3
VMungo0251G1496 Vigna mungo HOM05D003070 ORTHO05D003567 9.7e-10 66.2 61 80.3
Cc07_g21070 Coffea canephora HOM05D003070 ORTHO05D003567 1.3e-09 65.9 61 78.7
vmacro21807 Vaccinium macrocarpon HOM05D003070 ORTHO05D003567 1.3e-09 65.9 61 77.0
EL10Ac9g21252 Beta vulgaris HOM05D003070 ORTHO05D003567 1.7e-09 65.5 61 77.0
CAN.G1365.2 Capsicum annuum HOM05D003070 ORTHO05D003567 1.7e-09 65.5 61 77.0
PSO541G6151 Papaver somniferum HOM05D003070 ORTHO05D003567 1.7e-09 65.5 62 58.1
Sopen02g013210 Solanum pennellii HOM05D003070 ORTHO05D003567 1.7e-09 65.5 61 77.0
CANSAT25G0152 Cannabis sativa HOM05D003070 ORTHO05D003567 2.2e-09 65.1 61 78.7
GSVIVG01023894001 Vitis vinifera HOM05D003070 ORTHO05D003567 2.2e-09 65.1 61 75.4
CSS0005946 Camellia sinensis var. sinensis HOM05D003070 ORTHO05D003567 2.8e-09 64.7 61 75.4
CSS0015226 Camellia sinensis var. sinensis HOM05D003070 ORTHO05D003567 2.8e-09 64.7 61 75.4
Lj3g0021732 Lotus japonicus HOM05D003070 ORTHO05D003567 2.8e-09 64.7 61 68.9
Lalb_Chr23g0265771 Lupinus albus HOM05D003070 ORTHO05D003567 2.8e-09 64.7 61 70.5
Rhsim06G0006800 Rhododendron simsii HOM05D003070 ORTHO05D003567 3.7e-09 64.3 59 76.3
Rhsim07G0255000 Rhododendron simsii HOM05D003070 ORTHO05D003567 3.7e-09 64.3 61 75.4
PGSC0003DMG400022564 Solanum tuberosum HOM05D003070 ORTHO05D003567 3.7e-09 64.3 61 73.8
vmacro04406 Vaccinium macrocarpon HOM05D003070 ORTHO05D003567 3.7e-09 64.3 61 75.4
CANSAT64G1298 Cannabis sativa HOM05D003070 ORTHO05D003567 4.8e-09 63.9 61 62.3
Lj4A10T83 Lonicera japonica HOM05D003070 ORTHO05D003567 4.8e-09 63.9 62 79.0
Solyc02g062240.3 Solanum lycopersicum HOM05D003070 ORTHO05D003567 4.8e-09 63.9 61 75.4
PGSC0003DMG400019936 Solanum tuberosum HOM05D003070 ORTHO05D003567 4.8e-09 63.9 61 75.4
Os02g0102700 Oryza sativa ssp. japonica HOM05D003070 ORTHO05D003567 6.3e-09 63.5 61 60.7
Os03g0240800 Oryza sativa ssp. japonica HOM05D003070 ORTHO05D003567 6.3e-09 63.5 61 60.7
SEGI_35595 Sequoiadendron giganteum HOM05D003070 ORTHO05D003567 6.3e-09 63.5 62 56.5
Lalb_Chr11g0061601 Lupinus albus HOM05D003070 ORTHO05D003567 8.2e-09 63.2 61 77.0
Oeu058344.1 Olea europaea HOM05D003070 ORTHO05D003567 8.2e-09 63.2 61 77.0
RcHm_v2.0_Chr6g0304391 Rosa chinensis HOM05D003070 ORTHO05D003567 8.2e-09 63.2 61 78.7
CDE05G1714 Ceratophyllum demersum HOM05D003070 ORTHO05D003567 1.1e-08 62.8 61 73.8
CDE05G3019 Ceratophyllum demersum HOM05D003070 ORTHO05D003567 1.1e-08 62.8 61 73.8
MELO3C017020.2 Cucumis melo HOM05D003070 ORTHO05D003567 1.1e-08 62.8 61 75.4
CsaV3_4G037220 Cucumis sativus L. HOM05D003070 ORTHO05D003567 1.1e-08 62.8 61 75.4
Dinv41881 Davidia involucrata HOM05D003070 ORTHO05D003567 1.1e-08 62.8 61 75.4
Migut.J01784 Erythranthe guttata HOM05D003070 ORTHO05D003567 1.4e-08 62.4 62 77.4
Nitab4.5_0005721g0120 Nicotiana tabacum HOM05D003070 ORTHO05D003567 1.4e-08 62.4 58 79.3
Prupe.1G353900 Prunus persica HOM05D003070 ORTHO05D003567 1.8e-08 62.0 61 77.0
Cc07_g21090 Coffea canephora HOM05D003070 ORTHO05D003567 2.4e-08 61.6 61 77.0
Cpa.g.sc801.3 Carica papaya HOM05D003070 ORTHO05D003567 3.1e-08 61.2 61 73.8
Duzib041G0259 Durio zibethinus HOM05D003070 ORTHO05D003567 3.1e-08 61.2 61 75.4
Zm00001eb010240 Zea mays HOM05D003070 ORTHO05D003567 3.1e-08 61.2 61 67.2
Atru.chr13.140 Acer truncatum HOM05D003070 ORTHO05D003567 4.1e-08 60.8 61 73.8
Duzib116G0833 Durio zibethinus HOM05D003070 ORTHO05D003567 4.1e-08 60.8 61 75.4
Gohir.A01G105400 Gossypium hirsutum HOM05D003070 ORTHO05D003567 4.1e-08 60.8 61 73.8
Gohir.A02G084600 Gossypium hirsutum HOM05D003070 ORTHO05D003567 4.1e-08 60.8 61 75.4
Gohir.A10G117532 Gossypium hirsutum HOM05D003070 ORTHO05D003567 4.1e-08 60.8 61 75.4
Gohir.D01G091700 Gossypium hirsutum HOM05D003070 ORTHO05D003567 4.1e-08 60.8 61 73.8
Gorai.002G116800 Gossypium raimondii HOM05D003070 ORTHO05D003567 4.1e-08 60.8 61 73.8
Gorai.005G113900 Gossypium raimondii HOM05D003070 ORTHO05D003567 4.1e-08 60.8 61 75.4
Nn6g31729 Nelumbo nucifera HOM05D003070 ORTHO05D003567 4.1e-08 60.8 61 73.8
Hma1.2p1_0507F.1_g168560 Hydrangea macrophylla HOM05D003070 ORTHO05D003567 5.3e-08 60.5 61 73.8
COL.COLO4_28635 Corchorus olitorius HOM05D003070 ORTHO05D003567 6.9e-08 60.1 61 73.8
Gohir.D02G100500 Gossypium hirsutum HOM05D003070 ORTHO05D003567 9.1e-08 59.7 61 73.8
Sc14g0002430 Simmondsia chinensis HOM05D003070 ORTHO05D003567 9.1e-08 59.7 61 62.3
AL1G33520 Arabidopsis lyrata HOM05D003070 ORTHO05D003567 1.2e-07 59.3 61 55.7
AT1G20580 Arabidopsis thaliana HOM05D003070 ORTHO05D003567 1.2e-07 59.3 61 55.7
Duzib093G1878 Durio zibethinus HOM05D003070 ORTHO05D003567 1.2e-07 59.3 61 73.8
Lj4g0014875 Lotus japonicus HOM05D003070 ORTHO05D003567 1.5e-07 58.9 62 74.2
Zm00001eb399040 Zea mays HOM05D003070 ORTHO05D003567 1.5e-07 58.9 61 72.1
Carub.0001s2007 Capsella rubella HOM05D003070 ORTHO05D003567 2.0e-07 58.5 61 59.0
Oeu008125.2 Olea europaea HOM05D003070 ORTHO05D003567 2.6e-07 58.2 114 38.6
BolC7t42834H Brassica oleracea HOM05D003070 ORTHO05D003567 3.4e-07 57.8 61 57.4
CARHR021050 Cardamine hirsuta HOM05D003070 ORTHO05D003567 5.9e-07 57.0 61 57.4
Sp1g18290 Schrenkiella parvula HOM05D003070 ORTHO05D003567 5.9e-07 57.0 61 57.4
AUR62004691 Chenopodium quinoa HOM05D003070 ORTHO05D003567 7.7e-07 56.6 59 72.9
Thecc.08G059700 Theobroma cacao HOM05D003070 ORTHO05D003567 7.7e-07 56.6 61 72.1
BcaB03g12863 Brassica carinata HOM05D003070 ORTHO05D003567 1.7e-06 55.5 61 55.7
BcaB07g32057 Brassica carinata HOM05D003070 ORTHO05D003567 1.7e-06 55.5 61 55.7
BcaC05g25964 Brassica carinata HOM05D003070 ORTHO05D003567 1.7e-06 55.5 61 55.7
A06p16580 Brassica napus HOM05D003070 ORTHO05D003567 1.7e-06 55.5 61 55.7
C05p19150 Brassica napus HOM05D003070 ORTHO05D003567 1.7e-06 55.5 61 55.7
BolC5t30615H Brassica oleracea HOM05D003070 ORTHO05D003567 1.7e-06 55.5 61 55.7
BraA06t24765Z Brassica rapa HOM05D003070 ORTHO05D003567 1.7e-06 55.5 61 55.7
BcaC07g39041 Brassica carinata HOM05D003070 ORTHO05D003567 2.2e-06 55.1 61 55.7
Cc00_g34480 Coffea canephora HOM05D003070 ORTHO05D153165 2.9e-06 54.7 50 82.0
Nitab4.5_0001133g0080 Nicotiana tabacum HOM05D003070 ORTHO05D003567 2.9e-06 54.7 58 69.0
C08p20220 Brassica napus HOM05D003070 ORTHO05D003567 8.5e-06 53.1 61 54.1
BolC8t49651H Brassica oleracea HOM05D003070 ORTHO05D028052 8.5e-06 53.1 61 54.1


User provided reference genes

Program Settings