Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g33830 Coffea canephora HOM05D003070 ORTHO05D003567 9.5e-20 99.8 73 100.0
Cc07_g21080 Coffea canephora HOM05D003070 ORTHO05D003567 3.2e-15 84.7 77 87.0
Peaxi162Scf00083g00716 Petunia axillaris HOM05D003070 ORTHO05D003567 5.4e-15 84.0 66 87.9
TAR628G0460 Trochodendron aralioides HOM05D003070 ORTHO05D003567 7.0e-15 83.6 77 83.1
GSVIVG01013364001 Vitis vinifera HOM05D003070 ORTHO05D003567 7.0e-15 83.6 77 83.1
Cfa014085 Carpinus fangiana HOM05D003070 ORTHO05D003567 1.6e-14 82.4 77 79.2
CiPaw.08G073600 Carya illinoinensis HOM05D003070 ORTHO05D003567 1.6e-14 82.4 77 79.2
Haze_22786 Corylus avellana HOM05D003070 ORTHO05D003567 1.6e-14 82.4 77 79.2
unitig_22.g6031 Utricularia gibba HOM05D001030 ORTHO05D002278 1.6e-14 82.4 77 76.6
Lj4A805T23 Lonicera japonica HOM05D003070 ORTHO05D003567 2.0e-14 82.0 77 81.8
SalBow6G1017 Salvia bowleyana HOM05D003070 ORTHO05D003567 2.0e-14 82.0 64 93.8
Solyc02g084020.3 Solanum lycopersicum HOM05D003070 ORTHO05D003567 2.7e-14 81.6 77 79.2
Sopen02g028820 Solanum pennellii HOM05D003070 ORTHO05D003567 2.7e-14 81.6 77 79.2
PGSC0003DMG400003559 Solanum tuberosum HOM05D003070 ORTHO05D003567 2.7e-14 81.6 77 79.2
MSTRG.6449 Avicennia marina HOM05D003070 ORTHO05D003567 3.5e-14 81.3 77 83.1
Cc07_g21140 Coffea canephora HOM05D003070 ORTHO05D003567 3.5e-14 81.3 77 62.3
SalBow1G1789 Salvia bowleyana HOM05D003070 ORTHO05D003567 4.6e-14 80.9 77 83.1
SalBow1G7550 Salvia bowleyana HOM05D003070 ORTHO05D003567 4.6e-14 80.9 77 83.1
unitig_8.g3513 Utricularia gibba HOM05D001030 ORTHO05D003567 4.6e-14 80.9 77 77.9
Cc07_g21150 Coffea canephora HOM05D003070 ORTHO05D003567 5.9e-14 80.5 79 59.5
DCAR_009533 Daucus carota HOM05D003070 ORTHO05D003567 5.9e-14 80.5 77 59.7
Aqoxy5G01037 Aquilegia oxysepala HOM05D003070 ORTHO05D003567 7.8e-14 80.1 77 76.6
Nitab4.5_0012215g0010 Nicotiana tabacum HOM05D003070 ORTHO05D003567 7.8e-14 80.1 77 80.5
Potri.005G251100 Populus trichocarpa HOM05D003070 ORTHO05D003567 7.8e-14 80.1 77 59.7
Solyc03g033600.3 Solanum lycopersicum HOM05D003070 ORTHO05D003567 7.8e-14 80.1 77 83.1
Sopen03g006380 Solanum pennellii HOM05D003070 ORTHO05D003567 7.8e-14 80.1 77 83.1
TAR381G1070 Trochodendron aralioides HOM05D003070 ORTHO05D003567 7.8e-14 80.1 77 81.8
Eucgr.C04084 Eucalyptus grandis HOM05D003070 ORTHO05D003567 1.0e-13 79.7 77 72.7
CAN.G1365.2 Capsicum annuum HOM05D003070 ORTHO05D003567 1.3e-13 79.3 77 83.1
Nn5g30951 Nelumbo nucifera HOM05D003070 ORTHO05D003567 1.3e-13 79.3 77 80.5
Sopen02g013210 Solanum pennellii HOM05D003070 ORTHO05D003567 1.3e-13 79.3 77 83.1
Actinidia37920 Actinidia chinensis HOM05D003070 ORTHO05D003567 1.7e-13 79.0 77 75.3
CiPaw.07G138300 Carya illinoinensis HOM05D003070 ORTHO05D003567 1.7e-13 79.0 77 76.6
Dinv05529 Davidia involucrata HOM05D003070 ORTHO05D003567 1.7e-13 79.0 77 79.2
Dinv31947 Davidia involucrata HOM05D003070 ORTHO05D003567 1.7e-13 79.0 77 76.6
MBI05_g07853_MAGBIO Magnolia biondii HOM05D003070 ORTHO05D003567 1.7e-13 79.0 78 80.8
Oeu033775.1 Olea europaea HOM05D003070 ORTHO05D003567 1.7e-13 79.0 77 79.2
Peaxi162Scf00010g00029 Petunia axillaris HOM05D003070 ORTHO05D003567 1.7e-13 79.0 77 77.9
QL02p014285 Quercus lobata HOM05D003070 ORTHO05D003567 1.7e-13 79.0 76 76.3
GSVIVG01023894001 Vitis vinifera HOM05D003070 ORTHO05D003567 1.7e-13 79.0 77 81.8
CSS0005946 Camellia sinensis var. sinensis HOM05D003070 ORTHO05D003567 2.3e-13 78.6 77 81.8
CAN.G1671.3 Capsicum annuum HOM05D003070 ORTHO05D003567 2.3e-13 78.6 77 75.3
Sabra05G0194200 Salix brachista HOM05D003070 ORTHO05D003567 2.3e-13 78.6 77 58.4
Rhsim07G0255000 Rhododendron simsii HOM05D003070 ORTHO05D003567 2.9e-13 78.2 77 81.8
Sabra05G0194500 Salix brachista HOM05D003070 ORTHO05D003567 2.9e-13 78.2 63 65.1
SGA_v2.0_scaffold105G30448 Striga asiatica HOM05D003070 ORTHO05D003567 2.9e-13 78.2 79 78.5
vmacro04406 Vaccinium macrocarpon HOM05D003070 ORTHO05D003567 2.9e-13 78.2 77 81.8
Cc07_g21070 Coffea canephora HOM05D003070 ORTHO05D003567 3.9e-13 77.8 77 81.8
Solyc02g062240.3 Solanum lycopersicum HOM05D003070 ORTHO05D003567 3.9e-13 77.8 77 81.8
PGSC0003DMG400019936 Solanum tuberosum HOM05D003070 ORTHO05D003567 3.9e-13 77.8 77 81.8
vmacro21807 Vaccinium macrocarpon HOM05D003070 ORTHO05D003567 3.9e-13 77.8 77 80.5
Migut.K00070 Erythranthe guttata HOM05D003070 ORTHO05D003567 5.0e-13 77.4 65 89.2
Lj4A10T83 Lonicera japonica HOM05D003070 ORTHO05D003567 5.0e-13 77.4 65 93.8
PGSC0003DMG400022564 Solanum tuberosum HOM05D003070 ORTHO05D003567 5.0e-13 77.4 77 79.2
TWI12G0703 Tripterygium wilfordii HOM05D003070 ORTHO05D003567 5.0e-13 77.4 77 58.4
TWI56G1280 Tripterygium wilfordii HOM05D003070 ORTHO05D003567 5.0e-13 77.4 77 61.0
Actinidia28603 Actinidia chinensis HOM05D003070 ORTHO05D003567 6.6e-13 77.0 76 56.6
CSS0043026 Camellia sinensis var. sinensis HOM05D003070 ORTHO05D003567 6.6e-13 77.0 77 57.1
Medtr8g092200 Medicago truncatula HOM05D003070 ORTHO05D003567 8.6e-13 76.6 64 78.1
Peaxi162Scf00439g01010 Petunia axillaris HOM05D003070 ORTHO05D003567 8.6e-13 76.6 77 76.6
Psat7g049720 Pisum sativum HOM05D003070 ORTHO05D003567 8.6e-13 76.6 64 78.1
PGR031G0751 Punica granatum HOM05D003070 ORTHO05D003567 8.6e-13 76.6 77 58.4
TPR.G2168 Trifolium pratense HOM05D003070 ORTHO05D003567 8.6e-13 76.6 64 78.1
Ciclev10002830m.g Citrus clementina HOM05D003070 ORTHO05D003567 1.1e-12 76.3 77 77.9
TWI36G0363 Tripterygium wilfordii HOM05D003070 ORTHO05D003567 1.1e-12 76.3 77 67.5
Migut.J01784 Erythranthe guttata HOM05D003070 ORTHO05D003567 1.5e-12 75.9 65 92.3
Hma1.2p1_1100F.1_g256990 Hydrangea macrophylla HOM05D003070 ORTHO05D003567 1.5e-12 75.9 77 77.9
ATR0661G400 Amborella trichopoda HOM05D003070 ORTHO05D003567 1.9e-12 75.5 78 76.9
Cc07_g21090 Coffea canephora HOM05D003070 ORTHO05D003567 1.9e-12 75.5 77 83.1
Nitab4.5_0004254g0060 Nicotiana tabacum HOM05D003070 ORTHO05D003567 1.9e-12 75.5 78 78.2
Potri.002G010200 Populus trichocarpa HOM05D003070 ORTHO05D003567 1.9e-12 75.5 77 57.1
Rhsim06G0006800 Rhododendron simsii HOM05D003070 ORTHO05D003567 1.9e-12 75.5 75 78.7
Sabra02G0007600 Salix brachista HOM05D003070 ORTHO05D003567 1.9e-12 75.5 77 57.1
Nn6g31729 Nelumbo nucifera HOM05D003070 ORTHO05D003567 2.5e-12 75.1 64 90.6
MSTRG.26110 Avicennia marina HOM05D003070 ORTHO05D003567 3.3e-12 74.7 77 75.3
Dinv41881 Davidia involucrata HOM05D003070 ORTHO05D003567 3.3e-12 74.7 77 79.2
Actinidia15494 Actinidia chinensis HOM05D003070 ORTHO05D003567 4.3e-12 74.3 77 74.0
CSS0015226 Camellia sinensis var. sinensis HOM05D003070 ORTHO05D003567 4.3e-12 74.3 61 93.4
Hma1.2p1_0507F.1_g168560 Hydrangea macrophylla HOM05D003070 ORTHO05D003567 5.6e-12 73.9 77 79.2
CANSAT25G0152 Cannabis sativa HOM05D003070 ORTHO05D003567 7.3e-12 73.6 77 77.9
CDE05G1714 Ceratophyllum demersum HOM05D003070 ORTHO05D003567 7.3e-12 73.6 77 75.3
CDE05G3019 Ceratophyllum demersum HOM05D003070 ORTHO05D003567 7.3e-12 73.6 77 75.3
Cc07_g21100 Coffea canephora HOM05D003070 ORTHO05D003567 7.3e-12 73.6 61 63.9
Glyma.05G185800 Glycine max HOM05D003070 ORTHO05D003567 7.3e-12 73.6 64 85.9
Glyma.08G143900 Glycine max HOM05D003070 ORTHO05D003567 7.3e-12 73.6 64 85.9
Phvul.002G266900 Phaseolus vulgaris HOM05D003070 ORTHO05D003567 7.3e-12 73.6 64 85.9
VMungo0251G1496 Vigna mungo HOM05D003070 ORTHO05D003567 7.3e-12 73.6 64 85.9
Atru.chr13.140 Acer truncatum HOM05D003070 ORTHO05D003567 9.5e-12 73.2 64 87.5
arahy.Tifrunner.gnm1.ann1.NVS6IC Arachis hypogaea HOM05D003070 ORTHO05D003567 9.5e-12 73.2 63 82.5
arahy.Tifrunner.gnm1.ann1.SVUP05 Arachis hypogaea HOM05D003070 ORTHO05D003567 9.5e-12 73.2 63 82.5
Cpa.g.sc801.3 Carica papaya HOM05D003070 ORTHO05D003567 9.5e-12 73.2 77 77.9
Lalb_Chr11g0061601 Lupinus albus HOM05D003070 ORTHO05D003567 9.5e-12 73.2 64 85.9
Actinidia17044 Actinidia chinensis HOM05D003070 ORTHO05D003567 1.2e-11 72.8 77 55.8
SGA_v2.0_scaffold69G23095 Striga asiatica HOM05D003070 ORTHO05D003567 1.2e-11 72.8 78 64.1
EL10Ac9g21252 Beta vulgaris HOM05D003070 ORTHO05D003567 1.6e-11 72.4 77 75.3
Lalb_Chr08g0246401 Lupinus albus HOM05D003070 ORTHO05D003567 2.8e-11 71.6 64 79.7
Sed0009612 Sechium edule HOM05D003070 ORTHO05D003567 2.8e-11 71.6 77 71.4
Ca_17677_v3 Cicer arietinum L. HOM05D003070 ORTHO05D003567 4.7e-11 70.9 62 87.1
Ca_29603_v3 Cicer arietinum L. HOM05D003070 ORTHO05D003567 4.7e-11 70.9 62 87.1
Lj3g0021732 Lotus japonicus HOM05D003070 ORTHO05D003567 4.7e-11 70.9 64 73.4
PSO675G2974 Papaver somniferum HOM05D003070 ORTHO05D003567 4.7e-11 70.9 65 61.5
ClCG11G018690 Citrullus lanatus HOM05D003070 ORTHO05D003567 6.1e-11 70.5 77 57.1
Cc02_g33860 Coffea canephora HOM05D003070 ORTHO05D003567 6.1e-11 70.5 61 82.0
MD08G1002200 Malus domestica HOM05D003070 ORTHO05D003567 6.1e-11 70.5 77 57.1
MD15G1001300 Malus domestica HOM05D003070 ORTHO05D003567 6.1e-11 70.5 77 63.6
Manes.05G133600 Manihot esculenta HOM05D003070 ORTHO05D003567 6.1e-11 70.5 77 57.1
Manes.05G133700 Manihot esculenta HOM05D003070 ORTHO05D003567 6.1e-11 70.5 77 57.1
RcHm_v2.0_Chr6g0304391 Rosa chinensis HOM05D003070 ORTHO05D003567 6.1e-11 70.5 77 76.6
Hund00358 Selenicereus undatus HOM05D003070 ORTHO05D003567 6.1e-11 70.5 77 63.6
HPP92_022158 Vanilla planifolia HOM05D003070 ORTHO05D003567 1.0e-10 69.7 77 71.4
AUR62012923 Chenopodium quinoa HOM05D003070 ORTHO05D003567 1.4e-10 69.3 77 54.5
Duzib041G0259 Durio zibethinus HOM05D003070 ORTHO05D003567 1.4e-10 69.3 77 74.0
Duzib093G1878 Durio zibethinus HOM05D003070 ORTHO05D003567 1.4e-10 69.3 77 75.3
Duzib116G0833 Durio zibethinus HOM05D003070 ORTHO05D003567 1.4e-10 69.3 65 83.1
Gohir.A02G084600 Gossypium hirsutum HOM05D003070 ORTHO05D003567 1.4e-10 69.3 64 82.8
Lalb_Chr23g0265771 Lupinus albus HOM05D003070 ORTHO05D003567 1.4e-10 69.3 64 73.4
Nitab4.5_0005721g0120 Nicotiana tabacum HOM05D003070 ORTHO05D003567 1.4e-10 69.3 74 75.7
PSO541G6151 Papaver somniferum HOM05D003070 ORTHO05D003567 1.4e-10 69.3 65 60.0
Prupe.1G353900 Prunus persica HOM05D003070 ORTHO05D003567 1.4e-10 69.3 77 75.3
Gohir.A01G105400 Gossypium hirsutum HOM05D003070 ORTHO05D003567 1.8e-10 68.9 77 72.7
Gohir.D01G091700 Gossypium hirsutum HOM05D003070 ORTHO05D003567 1.8e-10 68.9 77 72.7
Gorai.002G116800 Gossypium raimondii HOM05D003070 ORTHO05D003567 1.8e-10 68.9 77 72.7
Gorai.005G113900 Gossypium raimondii HOM05D003070 ORTHO05D003567 1.8e-10 68.9 77 74.0
Lj4g0014875 Lotus japonicus HOM05D003070 ORTHO05D003567 1.8e-10 68.9 65 83.1
Manes.18G004900 Manihot esculenta HOM05D003070 ORTHO05D003567 1.8e-10 68.9 77 55.8
MELO3C017020.2 Cucumis melo HOM05D003070 ORTHO05D003567 2.3e-10 68.6 77 71.4
CsaV3_4G037220 Cucumis sativus L. HOM05D003070 ORTHO05D003567 2.3e-10 68.6 77 71.4
FAN15G2035 Fragaria x ananassa HOM05D003070 ORTHO05D003567 3.1e-10 68.2 72 81.9
Gohir.D02G100500 Gossypium hirsutum HOM05D003070 ORTHO05D003567 4.0e-10 67.8 77 72.7
Nitab4.5_0001133g0080 Nicotiana tabacum HOM05D003070 ORTHO05D003567 4.0e-10 67.8 74 75.7
THA.LOC104811465 Tarenaya hassleriana HOM05D003070 ORTHO05D003567 5.2e-10 67.4 77 55.8
Zm00001eb010240 Zea mays HOM05D003070 ORTHO05D003567 5.2e-10 67.4 77 66.2
Os02g0102700 Oryza sativa ssp. japonica HOM05D003070 ORTHO05D003567 6.8e-10 67.0 77 58.4
Os03g0240800 Oryza sativa ssp. japonica HOM05D003070 ORTHO05D003567 6.8e-10 67.0 77 58.4
Thecc.08G059700 Theobroma cacao HOM05D003070 ORTHO05D003567 6.8e-10 67.0 64 82.8
Zm00001eb399040 Zea mays HOM05D003070 ORTHO05D003567 8.9e-10 66.6 77 71.4
AUR62011707 Chenopodium quinoa HOM05D003070 ORTHO05D003567 1.2e-09 66.2 77 53.2
Oeu058344.1 Olea europaea HOM05D003070 ORTHO05D003567 1.2e-09 66.2 77 70.1
COL.COLO4_28635 Corchorus olitorius HOM05D003070 ORTHO05D003567 2.0e-09 65.5 77 70.1
FvH4_2g37310 Fragaria vesca HOM05D003070 ORTHO05D003567 2.0e-09 65.5 77 77.9
FAN27G0967 Fragaria x ananassa HOM05D003070 ORTHO05D003567 2.0e-09 65.5 77 77.9
Gohir.A10G117532 Gossypium hirsutum HOM05D003070 ORTHO05D003567 3.4e-09 64.7 61 83.6
CANSAT64G1298 Cannabis sativa HOM05D003070 ORTHO05D003567 4.4e-09 64.3 77 55.8
AUR62004691 Chenopodium quinoa HOM05D003070 ORTHO05D003567 5.8e-09 63.9 75 72.0
SEGI_35595 Sequoiadendron giganteum HOM05D003070 ORTHO05D003567 7.5e-09 63.5 78 51.3
AL1G33520 Arabidopsis lyrata HOM05D003070 ORTHO05D003567 2.2e-08 62.0 77 51.9
AT1G20580 Arabidopsis thaliana HOM05D003070 ORTHO05D003567 2.2e-08 62.0 77 51.9
Lsat_1_v5_gn_8_26300 Lactuca sativa HOM05D003070 ORTHO05D003567 2.9e-08 61.6 70 80.0
COL.COLO4_05221 Corchorus olitorius HOM05D003070 ORTHO05D003567 3.7e-08 61.2 77 72.7
AUR62023608 Chenopodium quinoa HOM05D003070 ORTHO05D003567 4.9e-08 60.8 64 54.7
Carub.0001s2007 Capsella rubella HOM05D003070 ORTHO05D003567 1.1e-07 59.7 77 53.2
FAN20G2728 Fragaria x ananassa HOM05D003070 ORTHO05D003567 1.1e-07 59.7 73 76.7
Sc14g0002430 Simmondsia chinensis HOM05D003070 ORTHO05D003567 1.1e-07 59.7 77 55.8
BolC7t42834H Brassica oleracea HOM05D003070 ORTHO05D003567 1.4e-07 59.3 77 53.2
Cc00_g34480 Coffea canephora HOM05D003070 ORTHO05D153165 1.9e-07 58.9 50 100.0
Ah.01g023690 Amaranthus hybridus HOM05D003070 ORTHO05D003567 2.4e-07 58.5 64 73.4
BcaC05g25964 Brassica carinata HOM05D003070 ORTHO05D003567 3.2e-07 58.2 77 53.2
C05p19150 Brassica napus HOM05D003070 ORTHO05D003567 3.2e-07 58.2 77 53.2
BolC5t30615H Brassica oleracea HOM05D003070 ORTHO05D003567 3.2e-07 58.2 77 53.2
CARHR021050 Cardamine hirsuta HOM05D003070 ORTHO05D003567 3.2e-07 58.2 77 51.9
Sp1g18290 Schrenkiella parvula HOM05D003070 ORTHO05D003567 3.2e-07 58.2 77 51.9
BcaB03g12863 Brassica carinata HOM05D003070 ORTHO05D003567 4.1e-07 57.8 77 51.9
BcaB07g32057 Brassica carinata HOM05D003070 ORTHO05D003567 4.1e-07 57.8 77 51.9
BcaC07g39041 Brassica carinata HOM05D003070 ORTHO05D003567 4.1e-07 57.8 77 51.9
A06p16580 Brassica napus HOM05D003070 ORTHO05D003567 4.1e-07 57.8 77 51.9
BraA06t24765Z Brassica rapa HOM05D003070 ORTHO05D003567 4.1e-07 57.8 77 51.9
Oeu008125.2 Olea europaea HOM05D003070 ORTHO05D003567 7.0e-07 57.0 130 36.9
THA.LOC104809773 Tarenaya hassleriana HOM05D003070 ORTHO05D003567 9.2e-07 56.6 77 68.8
C08p20220 Brassica napus HOM05D003070 ORTHO05D003567 1.6e-06 55.8 64 54.7
BolC8t49651H Brassica oleracea HOM05D003070 ORTHO05D028052 1.6e-06 55.8 64 54.7
Zm00001eb229320 Zea mays HOM05D003070 ORTHO05D003567 2.0e-06 55.5 41 70.7
Aa31LG4G6390 Aethionema arabicum HOM05D003070 ORTHO05D003567 2.7e-06 55.1 77 68.8
Lsat_1_v5_gn_2_4001 Lactuca sativa HOM05D003070 ORTHO05D003567 2.7e-06 55.1 28 89.3
Sp5g31440 Schrenkiella parvula HOM05D003070 ORTHO05D003567 2.7e-06 55.1 77 66.2


User provided reference genes

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