Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g28540 Coffea canephora HOM05D005087 ORTHO05D006427 0.0e+00 1806.2 936 100.0
CSS0029256 Camellia sinensis var. sinensis HOM05D005087 ORTHO05D006427 0.0e+00 1226.8 930 67.2
Lj9C640G8 Lonicera japonica HOM05D005087 ORTHO05D006427 0.0e+00 1209.1 925 66.5
MSTRG.17010 Avicennia marina HOM05D005087 ORTHO05D006427 0.0e+00 1204.1 930 67.3
TAR623G1255 Trochodendron aralioides HOM05D005087 ORTHO05D006427 0.0e+00 1192.2 932 65.8
SGA_v2.0_scaffold119G32758 Striga asiatica HOM05D005087 ORTHO05D006427 0.0e+00 1176.8 947 64.5
Migut.B01270 Erythranthe guttata HOM05D005087 ORTHO05D006427 0.0e+00 1171.8 930 65.3
CiPaw.14G002700 Carya illinoinensis HOM05D005087 ORTHO05D006427 0.0e+00 1159.8 930 63.4
Peaxi162Scf00694g00319 Petunia axillaris HOM05D005087 ORTHO05D006427 0.0e+00 1155.2 950 63.6
SalBow5G2001 Salvia bowleyana HOM05D005087 ORTHO05D006427 0.0e+00 1154.4 930 64.5
SalBow5G0870 Salvia bowleyana HOM05D005087 ORTHO05D006427 0.0e+00 1154.0 930 64.5
Rhsim01G0127000 Rhododendron simsii HOM05D005087 ORTHO05D006427 0.0e+00 1147.5 932 63.9
MELO3C023581.2 Cucumis melo HOM05D005087 ORTHO05D006427 0.0e+00 1147.1 930 62.8
CsaV3_7G030750 Cucumis sativus L. HOM05D005087 ORTHO05D006427 0.0e+00 1145.6 930 62.7
Sed0026614 Sechium edule HOM05D005087 ORTHO05D006427 0.0e+00 1145.6 930 62.8
GSVIVG01032195001 Vitis vinifera HOM05D005087 ORTHO05D006427 0.0e+00 1145.2 930 62.8
QL04p009808 Quercus lobata HOM05D005087 ORTHO05D006427 0.0e+00 1143.6 929 62.6
Manes.10G136400 Manihot esculenta HOM05D005087 ORTHO05D006427 0.0e+00 1135.6 925 62.4
Dinv09311 Davidia involucrata HOM05D005087 ORTHO05D006427 0.0e+00 1130.2 913 63.9
Atru.chr11.2578 Acer truncatum HOM05D005087 ORTHO05D006427 0.0e+00 1129.4 931 61.3
Cpa.g.sc125.40 Carica papaya HOM05D005087 ORTHO05D006427 0.0e+00 1129.0 930 61.6
Potri.001G262600 Populus trichocarpa HOM05D005087 ORTHO05D006427 0.0e+00 1122.8 930 62.0
Thecc.05G218700 Theobroma cacao HOM05D005087 ORTHO05D006427 0.0e+00 1117.4 930 60.1
HanXRQChr01g0007751 Helianthus annuus HOM05D005087 ORTHO05D006427 0.0e+00 1117.1 927 60.7
Prupe.2G022000 Prunus persica HOM05D005087 ORTHO05D006427 0.0e+00 1116.3 930 61.3
Sopen01g034670 Solanum pennellii HOM05D005087 ORTHO05D006427 0.0e+00 1114.4 923 62.5
Solyc01g087720.4 Solanum lycopersicum HOM05D005087 ORTHO05D006427 0.0e+00 1114.0 923 62.5
TWI09G0473 Tripterygium wilfordii HOM05D005087 ORTHO05D006427 0.0e+00 1104.0 921 61.6
Nn7g36293 Nelumbo nucifera HOM05D005087 ORTHO05D006427 0.0e+00 1099.7 929 60.4
MD07G1021900 Malus domestica HOM05D005087 ORTHO05D006427 0.0e+00 1097.0 926 60.5
Ciclev10030582m.g Citrus clementina HOM05D005087 ORTHO05D006427 0.0e+00 1095.9 934 60.8
Aqoxy1G00327 Aquilegia oxysepala HOM05D005087 ORTHO05D006427 0.0e+00 1095.5 923 59.6
Cfa022636 Carpinus fangiana HOM05D005087 ORTHO05D006427 0.0e+00 1082.4 922 60.4
Duzib177G0717 Durio zibethinus HOM05D005087 ORTHO05D006427 0.0e+00 1080.5 932 59.0
Phvul.002G285500 Phaseolus vulgaris HOM05D005087 ORTHO05D006427 0.0e+00 1075.1 931 59.2
RcHm_v2.0_Chr1g0317911 Rosa chinensis HOM05D005087 ORTHO05D006427 0.0e+00 1075.1 930 58.7
Glyma.20G198300 Glycine max HOM05D005087 ORTHO05D006427 6.4e-312 1074.7 934 58.6
Lsat_1_v5_gn_1_103161 Lactuca sativa HOM05D005087 ORTHO05D006427 3.2e-311 1071.6 909 61.3
THA.LOC104819098 Tarenaya hassleriana HOM05D005087 ORTHO05D006427 7.7e-311 1070.5 929 59.8
ClCG09G004390 Citrullus lanatus HOM05D005087 ORTHO05D006427 9.6e-311 1070.1 930 59.9
AL6G26800 Arabidopsis lyrata HOM05D005087 ORTHO05D006427 2.2e-310 1068.9 929 59.4
Thhalv10012535m.g Eutrema salsugineum HOM05D005087 ORTHO05D006427 9.1e-309 1063.5 929 59.5
Medtr4g115050 Medicago truncatula HOM05D005087 ORTHO05D006427 2.7e-308 1062.0 930 58.1
Haze_03133 Corylus avellana HOM05D005087 ORTHO05D006427 3.8e-307 1058.1 994 56.7
Haze_03136 Corylus avellana HOM05D005087 ORTHO05D006427 3.8e-307 1058.1 994 56.7
Eucgr.G03334 Eucalyptus grandis HOM05D005087 ORTHO05D006427 8.5e-307 1057.0 925 58.7
Carub.0006s1411 Capsella rubella HOM05D005087 ORTHO05D006427 2.5e-306 1055.4 929 59.0
Lj3g0015731 Lotus japonicus HOM05D005087 ORTHO05D006427 9.5e-306 1053.5 930 58.2
CDE09G1121 Ceratophyllum demersum HOM05D005087 ORTHO05D006427 1.8e-304 1049.3 922 58.4
FvH4_7g01640 Fragaria vesca HOM05D005087 ORTHO05D006427 3.0e-304 1048.5 930 57.6
Hund09863 Selenicereus undatus HOM05D005087 ORTHO05D006427 3.0e-304 1048.5 929 58.7
VMungo0251G2588 Vigna mungo HOM05D005087 ORTHO05D006427 5.7e-303 1044.3 911 58.2
AT5G15920 Arabidopsis thaliana HOM05D005087 ORTHO05D006427 1.7e-302 1042.7 920 58.7
Ca_14518_v3 Cicer arietinum L. HOM05D005087 ORTHO05D006427 1.7e-302 1042.7 934 57.0
DCAR_029700 Daucus carota HOM05D005087 ORTHO05D006427 2.8e-302 1042.0 922 59.3
Medtr3g033470 Medicago truncatula HOM05D005087 ORTHO05D006427 3.7e-302 1041.6 930 57.5
FAN06G3789 Fragaria x ananassa HOM05D005087 ORTHO05D006427 1.8e-301 1039.3 942 57.0
ECA248G2604 Erigeron canadensis HOM05D005087 ORTHO05D006427 2.0e-300 1035.8 927 57.3
BraA03t10076Z Brassica rapa HOM05D005087 ORTHO05D006427 5.0e-299 1031.2 928 58.1
Lju99A9T21 Lonicera japonica HOM05D005087 ORTHO05D006427 1.1e-298 1030.0 931 60.0
Psat6g018320 Pisum sativum HOM05D005087 ORTHO05D006427 3.3e-298 1028.5 934 56.9
A03p07470 Brassica napus HOM05D005087 ORTHO05D006427 4.3e-298 1028.1 921 57.8
CARHR197390 Cardamine hirsuta HOM05D005087 ORTHO05D006427 4.3e-298 1028.1 929 57.6
Aa31LG11G13680 Aethionema arabicum HOM05D005087 ORTHO05D006427 5.6e-298 1027.7 954 56.4
Gohir.D13G161900 Gossypium hirsutum HOM05D005087 ORTHO05D006427 5.6e-298 1027.7 929 57.2
Gorai.013G183900 Gossypium raimondii HOM05D005087 ORTHO05D006427 5.6e-298 1027.7 929 57.3
SEGI_29436 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 5.2e-296 1021.1 921 56.8
PSO339G3397 Papaver somniferum HOM05D005087 ORTHO05D006427 2.2e-294 1015.8 923 57.9
FAN03G0563 Fragaria x ananassa HOM05D005087 ORTHO05D006427 1.1e-293 1013.4 930 56.3
Lalb_Chr04g0263871 Lupinus albus HOM05D005087 ORTHO05D006427 2.3e-291 1005.7 934 55.5
Gohir.A13G157100 Gossypium hirsutum HOM05D005087 ORTHO05D006427 4.3e-290 1001.5 925 56.3
TPR.G14572 Trifolium pratense HOM05D005087 ORTHO05D006427 5.6e-290 1001.1 970 54.3
CANSAT80G0443 Cannabis sativa HOM05D005087 ORTHO05D006427 6.4e-286 987.6 927 56.1
BcaB01g05014 Brassica carinata HOM05D005087 ORTHO05D006427 1.1e-285 986.9 921 56.7
Nitab4.5_0002388g0080 Nicotiana tabacum HOM05D005087 ORTHO05D006427 7.8e-284 980.7 816 62.0
FAN10G1149 Fragaria x ananassa HOM05D005087 ORTHO05D006427 1.1e-282 976.9 971 54.3
C03p08670 Brassica napus HOM05D005087 ORTHO05D006427 1.9e-282 976.1 921 55.9
BolC3t13367H Brassica oleracea HOM05D005087 ORTHO05D006427 1.9e-282 976.1 921 55.9
Sabra16G0161000 Salix brachista HOM05D005087 ORTHO05D006427 1.2e-281 973.4 917 57.0
Sp6g28190 Schrenkiella parvula HOM05D005087 ORTHO05D006427 8.9e-280 967.2 929 55.3
Os05g0596600 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 3.7e-278 961.8 924 54.1
PGR031G1517 Punica granatum HOM05D005087 ORTHO05D006427 7.8e-276 954.1 923 55.5
ATR0626G229 Amborella trichopoda HOM05D005087 ORTHO05D006427 1.5e-274 949.9 854 58.2
PSO210G7144 Papaver somniferum HOM05D005087 ORTHO05D006427 3.6e-273 945.3 927 52.9
EL10Ac2g04365 Beta vulgaris HOM05D005087 ORTHO05D006427 2.4e-264 916.0 955 52.9
AUR62023092 Chenopodium quinoa HOM05D005087 ORTHO05D006427 7.8e-260 901.0 898 53.6
arahy.Tifrunner.gnm1.ann1.JJ1LEU Arachis hypogaea HOM05D005087 ORTHO05D006427 2.3e-259 899.4 915 52.0
Actinidia21541 Actinidia chinensis HOM05D005087 ORTHO05D006427 1.6e-257 893.3 733 63.6
Medtr5g036370 Medicago truncatula HOM05D005087 ORTHO05D006427 1.6e-257 893.3 934 51.0
arahy.Tifrunner.gnm1.ann1.1A5L99 Arachis hypogaea HOM05D005087 ORTHO05D006427 1.1e-256 890.6 902 51.8
AUR62009415 Chenopodium quinoa HOM05D005087 ORTHO05D006427 3.1e-248 862.4 878 53.2
Sc10g0000340 Simmondsia chinensis HOM05D005087 ORTHO05D006427 4.5e-247 858.6 826 56.2
Nitab4.5_0000707g0070 Nicotiana tabacum HOM05D005087 ORTHO05D006427 3.9e-243 845.5 804 56.3
Lj3g0013327 Lotus japonicus HOM05D005087 ORTHO05D006427 1.8e-235 820.1 930 48.2
CAN.G219.75 Capsicum annuum HOM05D005087 ORTHO05D006427 5.3e-232 808.5 724 59.5
SMO143G0265 Selaginella moellendorffii HOM05D005087 ORTHO05D006427 5.3e-232 808.5 917 47.7
Pp3c24_4940 Physcomitrium patens HOM05D005087 ORTHO05D006427 1.1e-226 790.8 916 46.8
Hma1.2p1_0685F.1_g203140 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 1.4e-221 773.9 630 63.5
SGA_v2.0_scaffold42G16189 Striga asiatica HOM05D005087 ORTHO05D006427 1.8e-216 756.9 673 58.2
Mapoly0007s0066 Marchantia polymorpha HOM05D005087 ORTHO05D006427 1.4e-211 740.7 906 45.6
MBI11_g23277_MAGBIO Magnolia biondii HOM05D005087 ORTHO05D006427 9.1e-208 728.0 719 54.1
Hma1.2p1_0685F.1_g203130 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 1.1e-205 721.1 540 67.6
Oeu049480.1 Olea europaea HOM05D005087 ORTHO05D006427 1.0e-198 698.0 781 50.4
CBR_g88572 Chara braunii HOM05D005087 ORTHO05D000002 8.0e-188 661.8 924 42.0
vmacro21195 Vaccinium macrocarpon HOM05D005087 ORTHO05D006427 2.2e-185 653.7 909 44.6
AagrBONN_evm.TU.Sc2ySwM_344.2054 Anthoceros agrestis HOM05D005087 ORTHO05D006427 2.9e-161 573.5 789 42.0
Zm00001eb225540 Zea mays HOM05D005087 ORTHO05D006427 4.9e-145 519.6 546 48.7
HPP92_016894 Vanilla planifolia HOM05D005087 ORTHO05D006427 1.4e-144 518.1 639 45.9
unitig_22.g5432 Utricularia gibba HOM05D005087 ORTHO05D006427 4.8e-140 503.1 490 53.7
SHI04082 Sapria himalayana HOM05D005087 ORTHO05D006427 1.1e-136 491.9 468 55.6
Hma1.2p1_0685F.1_g203150 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 3.7e-116 423.7 273 76.6
Medtr5g036330 Medicago truncatula HOM05D005087 ORTHO05D006427 1.7e-97 361.7 242 71.1
SEGI_04619 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 4.2e-96 357.1 233 73.8
SEGI_40819 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.3e-92 345.5 342 54.4
MCO04G035 Micromonas commoda HOM05D005087 ORTHO05D006427 6.3e-92 343.2 918 30.9
Actinidia21540 Actinidia chinensis HOM05D005087 ORTHO05D006427 8.5e-89 332.8 185 84.9
PRCOL_00002930 Prasinoderma coloniale HOM05D005087 ORTHO05D006427 5.5e-88 330.1 924 28.7
Cre10.g440200 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 1.7e-84 318.5 952 29.5
SHI04084 Sapria himalayana HOM05D005087 ORTHO05D006427 1.1e-75 289.3 221 67.4
PSO384G1020 Papaver somniferum HOM05D005087 ORTHO05D006427 1.0e-73 282.7 168 80.4
Cre10.g440300 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 2.8e-68 264.6 924 27.4
Cfa027028 Carpinus fangiana HOM05D005087 ORTHO05D006427 1.3e-49 202.6 968 23.8
Nitab4.5_0002388g0090 Nicotiana tabacum HOM05D005087 ORTHO05D006427 6.6e-49 200.3 105 88.6
Nitab4.5_0000707g0060 Nicotiana tabacum HOM05D005087 ORTHO05D006427 4.7e-39 167.5 91 80.2
unitig_22.g5433 Utricularia gibba HOM05D005087 ORTHO05D006427 7.6e-37 160.2 180 50.0
SHI04083 Sapria himalayana HOM05D005087 ORTHO05D006427 7.8e-34 150.2 219 39.3
vmacro17464 Vaccinium macrocarpon HOM05D005087 ORTHO05D006427 1.7e-33 149.1 117 62.4
Medtr5g036300 Medicago truncatula HOM05D005087 ORTHO05D006427 2.5e-32 145.2 122 64.8
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 4.8e-31 141.0 102 67.6
HanXRQChr02g0047141 Helianthus annuus HOM05D005087 ORTHO05D038003 9.9e-21 106.7 80 62.5
Actinidia20659 Actinidia chinensis HOM05D005087 ORTHO05D038003 2.3e-17 95.5 75 65.3
FAN01G1492 Fragaria x ananassa HOM05D005087 ORTHO05D006427 8.7e-17 93.6 68 61.8
Lj1C978G4 Lonicera japonica HOM05D004178 ORTHO05D005204 8.1e-15 87.0 952 21.4
FAN01G0652 Fragaria x ananassa HOM05D004178 ORTHO05D005204 1.5e-13 82.8 959 20.3
PSO384G4905 Papaver somniferum HOM05D000635 ORTHO05D000488 2.6e-13 82.0 68 60.3
Carub.0008s2215 Capsella rubella HOM05D004178 ORTHO05D005204 3.4e-13 81.6 953 20.9
Thhalv10003566m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 1.3e-12 79.7 969 21.3
Thecc.03G153700 Theobroma cacao HOM05D004178 ORTHO05D005204 1.3e-12 79.7 969 21.1
Aa31LG11G1940 Aethionema arabicum HOM05D004178 ORTHO05D005204 2.5e-11 75.5 973 20.6
Nn6g33950 Nelumbo nucifera HOM05D004178 ORTHO05D005204 2.5e-11 75.5 970 20.8
Actinidia13583 Actinidia chinensis HOM05D004178 ORTHO05D005204 5.5e-11 74.3 976 20.4
AT5G61460 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 7.1e-11 73.9 966 20.7
RcHm_v2.0_Chr1g0374131 Rosa chinensis HOM05D004178 ORTHO05D005204 2.1e-10 72.4 967 19.5
PGR042G0822 Punica granatum HOM05D004178 ORTHO05D005204 2.7e-10 72.0 956 20.5
CARHR275220 Cardamine hirsuta HOM05D004178 ORTHO05D005204 4.6e-10 71.2 964 21.9
CsaV3_7G030780 Cucumis sativus L. HOM05D000009 ORTHO05D000008 4.6e-10 71.2 50 68.0
BcaC06g33151 Brassica carinata HOM05D004178 ORTHO05D005204 1.0e-09 70.1 948 19.8
AL8G38150 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 1.8e-09 69.3 980 20.9
Actinidia13978 Actinidia chinensis HOM05D005087 ORTHO05D006427 2.3e-09 68.9 114 43.9
CiPaw.03G020700 Carya illinoinensis HOM05D004178 ORTHO05D005204 2.3e-09 68.9 966 19.5
CsaV3_4G004020 Cucumis sativus L. HOM05D004178 ORTHO05D005204 2.3e-09 68.9 962 21.5
Os11g0577300 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 5.1e-09 67.8 128 36.7
A03p47060 Brassica napus HOM05D004178 ORTHO05D005204 6.7e-09 67.4 942 20.4
BraA03t13829Z Brassica rapa HOM05D004178 ORTHO05D005204 6.7e-09 67.4 942 20.4
ClCG07G016820 Citrullus lanatus HOM05D004178 ORTHO05D005204 8.7e-09 67.0 969 21.6
TPR.G19974 Trifolium pratense HOM05D005087 ORTHO05D006427 1.5e-08 66.2 129 33.3
Nitab4.5_0000818g0230 Nicotiana tabacum HOM05D004178 ORTHO05D005204 1.9e-08 65.9 947 19.4
Gohir.A12G197800 Gossypium hirsutum HOM05D004178 ORTHO05D005204 5.7e-08 64.3 995 20.8
C07p45140 Brassica napus HOM05D004178 ORTHO05D005204 9.6e-08 63.5 942 20.1
Pp3c11_11190 Physcomitrium patens HOM05D004178 ORTHO05D005204 9.6e-08 63.5 969 19.4
BcaC06g33236 Brassica carinata HOM05D004178 ORTHO05D005204 1.3e-07 63.2 942 20.1
BolC7t45036H Brassica oleracea HOM05D004178 ORTHO05D005204 1.3e-07 63.2 942 20.1
SMO364G0410 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 1.3e-07 63.2 954 19.8
Actinidia13977 Actinidia chinensis HOM05D005087 ORTHO05D006427 1.6e-07 62.8 100 43.0
HanXRQChr01g0028141 Helianthus annuus HOM05D004178 ORTHO05D005204 1.6e-07 62.8 973 19.2
Solyc05g051680.4 Solanum lycopersicum HOM05D004178 ORTHO05D005204 1.6e-07 62.8 969 20.0
Sopen05g030150 Solanum pennellii HOM05D004178 ORTHO05D005204 1.6e-07 62.8 969 19.9
Gorai.008G215500 Gossypium raimondii HOM05D004178 ORTHO05D005204 3.7e-07 61.6 996 20.8
Carub.0006s0663 Capsella rubella HOM05D004178 ORTHO05D005204 8.2e-07 60.5 969 18.7
Gohir.D12G200300 Gossypium hirsutum HOM05D004178 ORTHO05D005204 8.2e-07 60.5 991 20.2
PSO063G1916 Papaver somniferum HOM05D004178 ORTHO05D005204 8.2e-07 60.5 979 20.3
AT5G07660 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 1.4e-06 59.7 972 18.7
Peaxi162Scf00167g00610 Petunia axillaris HOM05D004178 ORTHO05D005204 1.8e-06 59.3 972 19.8
DCAR_014619 Daucus carota HOM05D004178 ORTHO05D005204 2.4e-06 58.9 894 20.2
CSS0036077 Camellia sinensis var. sinensis HOM05D004178 ORTHO05D005204 3.1e-06 58.5 922 19.2
VMungo1127G0288 Vigna mungo HOM05D004178 ORTHO05D005204 3.1e-06 58.5 966 20.8
FAN10G0409 Fragaria x ananassa HOM05D004178 ORTHO05D005204 4.0e-06 58.2 915 18.7
Phvul.011G007300 Phaseolus vulgaris HOM05D004178 ORTHO05D005204 4.0e-06 58.2 965 20.3
Psat7g002800 Pisum sativum HOM05D005087 ORTHO05D006427 4.0e-06 58.2 85 43.5
ATR0317G120 Amborella trichopoda HOM05D004178 ORTHO05D005204 5.3e-06 57.8 951 18.8
Hund11836 Selenicereus undatus HOM05D004178 ORTHO05D005204 6.9e-06 57.4 162 25.9
Ah.07g207660 Amaranthus hybridus HOM05D004178 ORTHO05D005204 9.0e-06 57.0 270 21.9
Ca_27645_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 9.0e-06 57.0 121 28.9


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