Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g18560 Coffea canephora HOM05D006779 ORTHO05D008491 3.4e-128 461.8 262 100.0
Dinv42131 Davidia involucrata HOM05D006779 ORTHO05D008491 5.0e-87 325.1 264 72.7
Dinv23582 Davidia involucrata HOM05D006779 ORTHO05D008491 3.6e-85 318.9 265 70.9
Oeu064516.1 Olea europaea HOM05D006779 ORTHO05D008491 5.3e-81 305.1 264 68.2
Potri.009G105500 Populus trichocarpa HOM05D006779 ORTHO05D008491 7.7e-80 301.2 262 68.3
Solyc01g108430.3 Solanum lycopersicum HOM05D006779 ORTHO05D008491 2.2e-79 299.7 264 67.4
PGSC0003DMG400025811 Solanum tuberosum HOM05D006779 ORTHO05D008491 5.0e-79 298.5 264 67.4
Nitab4.5_0004334g0110 Nicotiana tabacum HOM05D006779 ORTHO05D008491 6.5e-79 298.1 264 68.6
Sopen01g050660 Solanum pennellii HOM05D006779 ORTHO05D008491 2.5e-78 296.2 264 66.7
Sabra09G0080600 Salix brachista HOM05D006779 ORTHO05D008491 7.2e-78 294.7 262 66.8
SalBow6G0615 Salvia bowleyana HOM05D006779 ORTHO05D008491 7.2e-78 294.7 262 68.3
Actinidia00459 Actinidia chinensis HOM05D006779 ORTHO05D008491 1.6e-77 293.5 263 63.9
Haze_01903 Corylus avellana HOM05D006779 ORTHO05D008491 4.7e-77 292.0 260 66.9
GSVIVG01031784001 Vitis vinifera HOM05D006779 ORTHO05D008491 6.1e-77 291.6 259 68.7
Migut.B00314 Erythranthe guttata HOM05D006779 ORTHO05D008491 8.0e-77 291.2 265 65.7
CSS0011815 Camellia sinensis var. sinensis HOM05D000591 ORTHO05D000579 1.4e-76 290.4 260 64.2
CiPaw.05G054000 Carya illinoinensis HOM05D006779 ORTHO05D008491 1.4e-76 290.4 260 67.3
Nitab4.5_0005583g0020 Nicotiana tabacum HOM05D006779 ORTHO05D008491 3.3e-75 285.8 264 67.4
QL11p037315 Quercus lobata HOM05D006779 ORTHO05D008491 1.7e-74 283.5 260 66.5
Manes.15G142500 Manihot esculenta HOM05D006779 ORTHO05D008491 2.2e-74 283.1 262 68.3
FAN24G0787 Fragaria x ananassa HOM05D006779 ORTHO05D008491 6.3e-74 281.6 260 63.8
MSTRG.16763 Avicennia marina HOM05D006779 ORTHO05D008491 1.1e-73 280.8 263 66.2
FvH4_2g06680 Fragaria vesca HOM05D006779 ORTHO05D008491 1.8e-73 280.0 260 63.5
FAN20G2937 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.8e-73 280.0 260 63.5
FAN15G3147 Fragaria x ananassa HOM05D006779 ORTHO05D008491 4.1e-73 278.9 260 63.1
PGR142G0644 Punica granatum HOM05D006779 ORTHO05D008491 2.6e-72 276.2 260 65.4
Lj5C207T4 Lonicera japonica HOM05D006779 ORTHO05D008491 1.0e-71 274.2 265 64.9
Eucgr.I01169 Eucalyptus grandis HOM05D006779 ORTHO05D008491 1.3e-71 273.9 259 62.2
RcHm_v2.0_Chr6g0258731 Rosa chinensis HOM05D006779 ORTHO05D008491 2.2e-71 273.1 260 61.2
Prupe.8G119200 Prunus persica HOM05D006779 ORTHO05D008491 6.5e-71 271.6 260 63.8
SGA_v2.0_scaffold90G27693 Striga asiatica HOM05D006779 ORTHO05D008491 6.5e-71 271.6 264 58.3
Rhsim11G0168500 Rhododendron simsii HOM05D006779 ORTHO05D008491 8.5e-71 271.2 291 56.0
DCAR_029018 Daucus carota HOM05D000144 ORTHO05D003364 1.1e-70 270.8 266 64.3
vmacro02181 Vaccinium macrocarpon HOM05D006779 ORTHO05D008491 1.1e-70 270.8 295 54.9
SGA_v2.0_scaffold90G27688 Striga asiatica HOM05D006779 ORTHO05D008491 1.9e-70 270.0 264 58.3
Sed0011670 Sechium edule HOM05D006779 ORTHO05D008491 4.2e-70 268.9 260 64.2
CsaV3_7G008730 Cucumis sativus L. HOM05D006779 ORTHO05D008491 1.2e-69 267.3 260 63.5
CAN.G322.16 Capsicum annuum HOM05D006779 ORTHO05D008491 3.6e-69 265.8 262 64.9
Peaxi162Scf00016g01637 Petunia axillaris HOM05D006779 ORTHO05D008491 2.3e-68 263.1 249 66.7
Thecc.02G097400 Theobroma cacao HOM05D006779 ORTHO05D008491 8.8e-68 261.2 259 64.9
TWI79G0004 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 2.6e-67 259.6 264 64.0
MD05G1075500 Malus domestica HOM05D006779 ORTHO05D008491 7.5e-67 258.1 260 61.9
Ciclev10029963m.g Citrus clementina HOM05D006779 ORTHO05D008491 1.3e-66 257.3 263 63.1
Gohir.D02G212600 Gossypium hirsutum HOM05D006779 ORTHO05D008491 2.8e-66 256.1 260 64.2
Sc18g0004890 Simmondsia chinensis HOM05D006779 ORTHO05D008491 2.8e-66 256.1 262 64.9
Atru.chr5.2773 Acer truncatum HOM05D006779 ORTHO05D008491 4.8e-66 255.4 264 62.9
Gorai.005G240600 Gossypium raimondii HOM05D006779 ORTHO05D008491 8.3e-66 254.6 260 63.8
TWI31G0027 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 8.3e-66 254.6 264 62.9
CANSAT25G0176 Cannabis sativa HOM05D006779 ORTHO05D008491 1.8e-65 253.4 262 61.8
Gohir.A03G191700 Gossypium hirsutum HOM05D006779 ORTHO05D008491 1.8e-65 253.4 260 63.5
Phvul.007G247000 Phaseolus vulgaris HOM05D006779 ORTHO05D008491 4.5e-64 248.8 265 56.2
Aqoxy6G01411 Aquilegia oxysepala HOM05D006779 ORTHO05D008491 5.9e-64 248.4 263 60.1
unitig_60.g25783 Utricularia gibba HOM05D006779 ORTHO05D008491 1.0e-63 247.7 262 61.1
arahy.Tifrunner.gnm1.ann1.8ZG09Z Arachis hypogaea HOM05D006779 ORTHO05D008491 1.3e-63 247.3 261 61.3
Glyma.01G146900 Glycine max HOM05D006779 ORTHO05D008491 1.3e-63 247.3 259 61.8
Glyma.10G112900 Glycine max HOM05D006779 ORTHO05D008491 1.3e-63 247.3 259 61.8
Nn5g30192 Nelumbo nucifera HOM05D006779 ORTHO05D008491 1.7e-63 246.9 262 62.6
arahy.Tifrunner.gnm1.ann1.T066AP Arachis hypogaea HOM05D006779 ORTHO05D008491 5.0e-63 245.4 266 60.5
Glyma.02G159500 Glycine max HOM05D006779 ORTHO05D008491 1.9e-62 243.4 259 61.4
ECA234G4762 Erigeron canadensis HOM05D006779 ORTHO05D008491 1.2e-61 240.7 263 59.7
Lalb_Chr09g0328181 Lupinus albus HOM05D006779 ORTHO05D008491 3.6e-61 239.2 259 60.2
HPP92_004257 Vanilla planifolia HOM05D006779 ORTHO05D008491 3.6e-61 239.2 262 59.5
COL.COLO4_32686 Corchorus olitorius HOM05D006779 ORTHO05D008491 4.7e-61 238.8 259 62.5
MBI02_g21199_MAGBIO Magnolia biondii HOM05D006779 ORTHO05D008491 1.4e-60 237.3 273 57.5
Lsat_1_v5_gn_5_113321 Lactuca sativa HOM05D006779 ORTHO05D008491 2.3e-60 236.5 261 56.3
arahy.Tifrunner.gnm1.ann1.QJKD6Y Arachis hypogaea HOM05D006779 ORTHO05D008491 3.0e-60 236.1 264 60.2
ClCG02G005780 Citrullus lanatus HOM05D006779 ORTHO05D008491 1.5e-59 233.8 302 54.6
Aa31LG10G4420 Aethionema arabicum HOM05D006779 ORTHO05D008491 3.4e-59 232.6 259 55.2
Psat7g121840 Pisum sativum HOM05D006779 ORTHO05D008491 5.4e-57 225.3 262 58.4
Sp1g36470 Schrenkiella parvula HOM05D006779 ORTHO05D008491 2.0e-56 223.4 262 56.1
EL10Ac3g06870 Beta vulgaris HOM05D006779 ORTHO05D008491 5.9e-56 221.9 259 59.1
Ca_18655_v3 Cicer arietinum L. HOM05D006779 ORTHO05D008491 5.9e-56 221.9 260 57.7
Thhalv10011741m.g Eutrema salsugineum HOM05D006779 ORTHO05D008491 5.9e-56 221.9 262 55.7
AUR62034187 Chenopodium quinoa HOM05D006779 ORTHO05D008491 1.0e-55 221.1 262 57.3
PSO541G4058 Papaver somniferum HOM05D006779 ORTHO05D008491 1.0e-55 221.1 265 57.0
HanXRQChr10g0303251 Helianthus annuus HOM05D006779 ORTHO05D008491 1.9e-54 216.9 261 57.1
AT1G49590 Arabidopsis thaliana HOM05D006779 ORTHO05D008491 2.5e-54 216.5 262 56.1
Ah.04g152710 Amaranthus hybridus HOM05D006779 ORTHO05D008491 2.1e-53 213.4 256 52.0
Lj4g0006122 Lotus japonicus HOM05D006779 ORTHO05D008491 3.6e-53 212.6 267 56.6
PSO675G5018 Papaver somniferum HOM05D006779 ORTHO05D008491 3.6e-53 212.6 265 55.8
Hund00325 Selenicereus undatus HOM05D006779 ORTHO05D008491 1.8e-52 210.3 259 56.8
AUR62022456 Chenopodium quinoa HOM05D006779 ORTHO05D008491 3.4e-51 206.1 302 50.3
BolC6t35591H Brassica oleracea HOM05D006779 ORTHO05D008491 1.7e-50 203.8 260 52.7
Carub.0001s3879 Capsella rubella HOM05D006779 ORTHO05D008491 1.7e-50 203.8 263 54.8
A06p03540 Brassica napus HOM05D006779 ORTHO05D008491 3.7e-50 202.6 263 52.1
BraA06t23562Z Brassica rapa HOM05D006779 ORTHO05D008491 4.1e-49 199.1 261 51.7
Medtr4g086640 Medicago truncatula HOM05D006779 ORTHO05D008491 1.2e-48 197.6 267 54.3
AL1G56960 Arabidopsis lyrata HOM05D006779 ORTHO05D008491 1.5e-46 190.7 268 52.2
BcaNung06359 Brassica carinata HOM05D006779 ORTHO05D008491 7.3e-46 188.3 262 49.2
CDE06G1966 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 2.1e-45 186.8 260 45.8
SHI05379 Sapria himalayana HOM05D006779 ORTHO05D008491 3.6e-45 186.0 261 51.7
MELO3C018438.2 Cucumis melo HOM05D006779 ORTHO05D008491 3.7e-42 176.0 214 57.9
Zm00001eb373090 Zea mays HOM05D006779 ORTHO05D008491 1.0e-39 167.9 262 49.2
ATR0097G032 Amborella trichopoda HOM05D006779 ORTHO05D008491 3.9e-39 166.0 252 44.0
Mapoly0157s0003 Marchantia polymorpha HOM05D006779 ORTHO05D008491 1.6e-37 160.6 299 42.1
AagrBONN_evm.TU.Sc2ySwM_344.4302 Anthoceros agrestis HOM05D006779 ORTHO05D008491 7.5e-35 151.8 288 44.4
TAR628G0388 Trochodendron aralioides HOM05D006779 ORTHO05D008491 2.2e-34 150.2 115 71.3
Cpa.g.sc62.36 Carica papaya HOM05D006779 ORTHO05D008491 1.4e-33 147.5 102 73.5
CSS0024784 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 3.2e-33 146.4 193 51.8
FAN20G1913 Fragaria x ananassa HOM05D006779 ORTHO05D008491 9.2e-33 144.8 150 60.0
C06p04620 Brassica napus HOM05D006779 ORTHO05D008491 4.6e-32 142.5 217 51.2
CSS0021002 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.3e-31 141.0 193 50.8
HPP92_004235 Vanilla planifolia HOM05D006779 ORTHO05D008491 2.3e-31 140.2 216 52.3
Pp3c14_26080 Physcomitrium patens HOM05D006779 ORTHO05D008491 3.3e-30 136.3 292 41.8
CBR_g17671 Chara braunii HOM05D006779 ORTHO05D008491 7.6e-27 125.2 334 35.9
SMO367G0139 Selaginella moellendorffii HOM05D006779 ORTHO05D008491 9.9e-27 124.8 284 37.3
CARHR039640 Cardamine hirsuta HOM05D006779 ORTHO05D008491 2.2e-26 123.6 153 60.8
TPR.G23511 Trifolium pratense HOM05D006779 ORTHO05D008491 2.5e-22 110.2 70 75.7
Os06g0215200 Oryza sativa ssp. japonica HOM05D006779 ORTHO05D008491 5.6e-22 109.0 70 72.9
CSS0034996 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.5e-19 100.9 193 43.0
TPR.G23531 Trifolium pratense HOM05D006779 ORTHO05D008491 2.6e-19 100.1 156 50.6
CSS0022737 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 4.4e-19 99.4 185 43.8
AUR62042088 Chenopodium quinoa HOM05D006779 ORTHO05D008491 3.8e-18 96.3 214 44.9
CDE03G0027 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 4.2e-17 92.8 260 33.5
CSS0005405 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.9e-14 84.0 153 41.8
CSS0011003 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.9e-14 84.0 153 41.8
TAR628G1516 Trochodendron aralioides HOM05D006779 ORTHO05D008491 1.3e-13 81.3 120 45.8
EL10Ac9g20940 Beta vulgaris HOM05D002686 ORTHO05D003222 7.8e-08 62.0 90 51.1
Ah.08g219340 Amaranthus hybridus HOM05D006779 ORTHO05D008491 5.6e-06 55.8 97 39.2


User provided reference genes

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