Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 1.0e-111 406.8 205 100.0
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 9.6e-70 267.3 157 84.7
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 4.1e-60 235.3 158 74.1
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 5.3e-60 235.0 158 74.1
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 5.3e-60 235.0 178 65.7
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.3e-58 230.3 158 70.9
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.3e-58 230.3 158 70.9
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 2.9e-58 229.2 159 72.3
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 8.5e-58 227.6 158 70.9
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 2.5e-57 226.1 159 71.7
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 5.5e-57 224.9 158 67.1
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 9.3e-57 224.2 160 70.6
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 1.2e-56 223.8 158 69.6
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 1.2e-56 223.8 159 71.1
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 2.1e-56 223.0 158 67.7
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 2.1e-56 223.0 157 69.4
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 4.6e-56 221.9 160 68.8
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 1.0e-55 220.7 158 69.6
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 1.8e-55 219.9 159 68.6
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 3.0e-55 219.2 155 70.3
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 3.0e-55 219.2 161 67.7
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 8.7e-55 217.6 158 69.0
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 8.7e-55 217.6 160 66.2
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 1.5e-54 216.9 157 68.8
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.9e-54 216.5 155 69.7
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 4.3e-54 215.3 158 67.7
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 5.7e-54 214.9 158 67.1
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 5.7e-54 214.9 157 67.5
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 7.4e-54 214.5 157 68.8
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 1.3e-53 213.8 157 67.5
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 2.2e-53 213.0 158 67.1
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 2.2e-53 213.0 157 67.5
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 2.8e-53 212.6 158 67.1
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 2.8e-53 212.6 157 66.9
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 2.8e-53 212.6 157 66.9
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 3.7e-53 212.2 158 66.5
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 4.8e-53 211.8 158 66.5
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 4.8e-53 211.8 158 66.5
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 6.3e-53 211.5 158 65.8
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 6.3e-53 211.5 158 66.5
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 1.1e-52 210.7 157 65.0
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 1.4e-52 210.3 157 65.0
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.8e-52 209.9 158 64.6
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 2.4e-52 209.5 157 67.5
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 3.1e-52 209.1 158 67.1
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 4.1e-52 208.8 158 66.5
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 4.1e-52 208.8 158 66.5
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 5.3e-52 208.4 161 65.8
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 5.3e-52 208.4 159 66.7
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 5.3e-52 208.4 158 66.5
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 5.3e-52 208.4 158 68.4
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 6.9e-52 208.0 158 69.0
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 9.1e-52 207.6 157 66.9
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 9.1e-52 207.6 157 64.3
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 1.2e-51 207.2 158 65.2
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 2.0e-51 206.5 158 63.3
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 2.0e-51 206.5 158 65.2
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 2.6e-51 206.1 158 64.6
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 3.4e-51 205.7 159 64.8
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 3.4e-51 205.7 157 66.2
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 3.4e-51 205.7 157 66.2
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 4.5e-51 205.3 157 64.3
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.0e-50 204.1 157 65.0
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 1.3e-50 203.8 158 64.6
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.7e-50 203.4 158 63.9
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 2.9e-50 202.6 158 63.9
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 6.5e-50 201.4 185 58.9
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 1.9e-49 199.9 157 65.0
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 4.2e-49 198.7 155 60.0
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 5.5e-49 198.4 158 62.0
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 7.2e-49 198.0 157 64.3
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 1.2e-48 197.2 201 54.7
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 1.6e-48 196.8 158 61.4
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 1.6e-48 196.8 158 63.3
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 2.7e-48 196.1 157 64.3
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 3.6e-48 195.7 157 63.7
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 6.1e-48 194.9 161 60.9
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 7.9e-48 194.5 157 59.9
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 7.9e-48 194.5 146 67.1
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 1.0e-47 194.1 157 64.3
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 1.8e-47 193.4 143 65.0
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 3.0e-47 192.6 159 59.7
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 5.1e-47 191.8 158 62.0
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 5.1e-47 191.8 157 59.9
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 5.1e-47 191.8 157 62.4
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 2.0e-46 189.9 157 60.5
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 2.6e-46 189.5 157 60.5
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.6e-46 189.5 157 58.6
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 3.3e-46 189.1 157 60.5
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 3.3e-46 189.1 157 61.1
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 4.4e-46 188.7 157 59.9
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 5.7e-46 188.3 157 59.2
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 5.7e-46 188.3 157 58.6
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 5.7e-46 188.3 184 54.3
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 7.4e-46 188.0 157 60.5
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 7.4e-46 188.0 157 61.1
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 9.7e-46 187.6 157 58.6
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 6.3e-45 184.9 157 58.6
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.4e-44 183.7 157 58.6
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 2.4e-44 183.0 159 59.1
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 3.1e-44 182.6 155 60.0
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 5.3e-44 181.8 157 59.2
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 9.1e-44 181.0 157 53.5
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 9.1e-44 181.0 157 54.1
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 2.0e-43 179.9 156 57.7
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 3.4e-43 179.1 157 58.6
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 4.5e-43 178.7 177 55.4
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 5.9e-43 178.3 159 57.2
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 1.1e-41 174.1 101 76.2
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 1.4e-41 173.7 157 53.5
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 1.9e-41 173.3 159 53.5
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 1.9e-41 173.3 157 56.7
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 7.9e-40 167.9 143 58.0
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 1.4e-39 167.2 187 49.7
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 2.6e-38 162.9 115 73.0
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 5.7e-38 161.8 137 62.8
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 1.7e-37 160.2 157 51.0
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 9.1e-36 154.5 97 75.3
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 3.5e-35 152.5 137 58.4
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 1.1e-33 147.5 157 47.8
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 7.2e-33 144.8 157 49.0
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 3.6e-32 142.5 159 43.4
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 2.3e-31 139.8 111 61.3
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.6e-30 136.3 137 53.3
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 3.3e-30 136.0 158 46.8
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.3e-29 134.0 112 60.7
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 1.8e-23 113.6 136 47.1
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 3.0e-23 112.8 136 47.1
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 6.8e-23 111.7 166 37.3
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 3.1e-20 102.8 157 36.3
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 1.6e-19 100.5 153 39.9
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 2.9e-18 96.3 102 49.0
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.2e-16 90.9 131 42.0
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.6e-16 90.5 112 42.9
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.6e-16 89.4 105 45.7
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 7.5e-14 81.6 94 42.6
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 9.8e-14 81.3 48 79.2
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 3.7e-13 79.3 153 34.0
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 2.4e-12 76.6 80 55.0
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 9.2e-12 74.7 160 31.2
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 9.5e-09 64.7 95 36.8
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 4.7e-08 62.4 48 62.5
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.5e-06 57.4 46 56.5


User provided reference genes

Program Settings