Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 2.5e-242 841.6 422 100.0
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 4.0e-171 605.1 503 67.4
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 4.0e-171 605.1 503 67.4
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 2.9e-169 599.0 472 69.5
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.1e-168 597.0 497 66.2
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 1.7e-166 589.7 478 67.4
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 5.1e-166 588.2 482 67.2
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 4.0e-163 578.6 478 66.5
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 5.2e-163 578.2 478 66.5
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 5.2e-163 578.2 478 66.5
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 2.6e-162 575.9 516 62.4
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 1.7e-161 573.2 479 66.2
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 2.2e-161 572.8 479 66.2
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 3.2e-160 568.9 519 61.3
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 2.1e-159 566.2 507 62.1
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 2.1e-151 539.7 510 59.4
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 3.8e-145 518.8 490 58.6
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 4.2e-144 515.4 473 62.8
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 1.1e-136 490.7 516 55.0
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 2.2e-132 476.5 479 56.4
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.1e-131 474.2 447 61.7
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 3.6e-127 459.1 533 51.2
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 7.9e-127 458.0 456 56.1
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 1.4e-126 457.2 459 58.2
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 1.8e-126 456.8 538 49.8
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 7.4e-125 451.4 537 49.7
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 1.3e-124 450.7 521 49.7
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 1.3e-124 450.7 522 50.4
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 1.7e-124 450.3 522 49.8
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 4.8e-124 448.7 519 48.4
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 4.8e-124 448.7 502 51.8
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 8.2e-124 448.0 520 51.2
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 8.2e-124 448.0 517 50.1
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.4e-123 446.4 520 50.6
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 2.4e-123 446.4 452 54.6
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 4.1e-123 445.7 504 50.6
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 5.3e-123 445.3 520 49.6
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 5.3e-123 445.3 523 49.7
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.3e-123 445.3 519 51.1
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.1e-123 444.5 520 50.2
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-122 444.1 520 50.2
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 2.6e-122 443.0 509 50.9
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 7.7e-122 441.4 528 49.6
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 1.7e-121 440.3 520 50.6
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 2.2e-121 439.9 502 49.6
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 2.2e-121 439.9 523 48.4
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 6.5e-121 438.3 519 49.3
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 1.4e-120 437.2 533 48.6
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 2.5e-120 436.4 525 49.0
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 3.2e-120 436.0 522 48.3
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 4.2e-120 435.6 533 49.3
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 7.2e-120 434.9 485 50.5
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 9.4e-120 434.5 525 49.7
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 1.6e-119 433.7 506 49.6
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 2.1e-119 433.3 506 49.6
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 1.8e-118 430.3 514 48.2
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 1.8e-118 430.3 502 50.0
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 2.3e-118 429.9 508 49.4
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 2.3e-118 429.9 505 48.5
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 3.0e-118 429.5 504 49.4
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 5.1e-118 428.7 524 49.6
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 6.7e-118 428.3 481 51.8
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 2.6e-117 426.4 535 49.0
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 3.3e-117 426.0 512 49.2
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 3.3e-117 426.0 516 48.6
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 5.7e-117 425.2 543 48.6
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 1.7e-116 423.7 537 46.6
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.8e-116 422.9 522 48.3
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.8e-116 422.9 522 49.2
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 2.8e-116 422.9 530 47.0
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 3.7e-116 422.5 522 48.9
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 3.7e-116 422.5 540 46.5
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 4.8e-116 422.2 530 47.7
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.4e-115 420.6 532 46.2
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 1.4e-115 420.6 529 47.4
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 3.1e-115 419.5 513 48.1
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 2.0e-114 416.8 496 48.8
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 3.4e-114 416.0 541 46.4
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 3.4e-114 416.0 537 46.2
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 7.7e-114 414.8 535 45.8
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 1.0e-113 414.5 383 61.9
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.3e-113 414.1 528 47.0
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 1.7e-113 413.7 521 48.4
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 2.9e-113 412.9 516 46.7
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 3.8e-113 412.5 530 45.8
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 5.0e-113 412.1 512 46.7
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.1e-112 411.0 506 50.0
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 1.1e-112 411.0 533 46.7
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 1.4e-112 410.6 507 48.3
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.4e-112 410.6 528 48.1
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 1.9e-112 410.2 525 46.7
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.5e-112 409.8 507 48.1
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 2.5e-112 409.8 502 49.4
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 2.5e-112 409.8 534 47.0
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 3.2e-112 409.5 518 46.1
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 1.6e-111 407.1 481 48.2
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 6.1e-111 405.2 542 46.9
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 3.9e-110 402.5 526 46.4
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 3.9e-110 402.5 541 46.6
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 5.2e-110 402.1 534 47.4
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.5e-109 400.6 487 48.7
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 3.1e-107 392.9 532 45.7
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 4.1e-107 392.5 528 45.1
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 5.3e-107 392.1 531 45.2
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 2.0e-106 390.2 521 47.2
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 5.9e-106 388.7 531 44.4
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 2.7e-103 379.8 525 45.0
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 6.1e-103 378.6 530 44.3
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 3.3e-101 372.9 522 45.4
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 1.1e-99 367.9 526 43.5
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 5.3e-99 365.5 484 45.5
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 7.2e-96 355.1 478 43.7
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 1.2e-95 354.4 434 47.5
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 6.8e-94 348.6 471 44.2
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 2.8e-87 326.6 428 46.5
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 4.7e-87 325.9 261 67.0
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 5.2e-86 322.4 473 44.4
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 1.5e-85 320.9 568 37.5
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 1.3e-84 317.8 498 40.8
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 7.8e-82 308.5 452 44.0
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 7.5e-77 292.0 391 45.5
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 3.9e-73 279.6 395 45.3
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 3.4e-69 266.5 548 34.3
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 1.4e-67 261.2 263 52.5
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 7.8e-66 255.4 552 34.8
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 2.3e-65 253.8 442 38.7
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 3.0e-65 253.4 146 80.8
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 1.8e-62 244.2 385 41.8
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 1.3e-60 238.0 369 43.4
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 8.3e-60 235.3 367 43.1
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 1.9e-59 234.2 276 51.8
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 2.4e-59 233.8 358 43.9
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 1.2e-58 231.5 526 33.8
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 3.6e-55 219.9 183 65.6
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.6e-47 193.4 269 44.6
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.6e-47 193.4 269 44.6
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 2.3e-41 174.1 193 57.0
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 1.6e-39 167.9 172 53.5
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 4.0e-38 163.3 225 43.6
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 8.4e-36 155.6 256 42.2
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 1.1e-32 145.2 396 29.8
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 1.9e-32 144.4 434 30.4
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 3.7e-31 140.2 155 50.3
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 6.4e-28 129.4 272 34.6
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.3e-25 121.7 116 52.6
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 2.2e-15 87.8 63 73.0
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 1.4e-14 85.1 57 70.2
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 6.9e-14 82.8 174 33.3
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 2.0e-13 81.3 80 50.0
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 2.1e-10 71.2 96 43.8
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 1.4e-09 68.6 56 57.1
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 7.4e-08 62.8 74 44.6
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 4.8e-07 60.1 63 58.7


User provided reference genes

Program Settings