Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1879.4 933 100.0
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1806.2 933 95.4
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1793.5 933 94.7
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1761.5 934 92.9
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1760.3 934 92.8
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1760.3 934 92.8
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1756.9 934 92.7
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1756.9 934 92.9
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1755.7 934 92.6
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1754.6 934 92.5
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1754.6 934 92.5
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1752.3 936 92.8
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1732.2 934 92.3
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1708.0 949 89.3
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1616.3 944 85.2
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1555.0 947 80.6
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1553.9 946 80.4
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1553.5 947 80.5
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1553.5 948 81.3
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1553.1 937 80.9
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1553.1 947 80.9
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1546.6 944 80.8
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1545.4 943 81.0
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1543.1 948 79.9
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1541.6 944 80.9
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1539.2 945 80.7
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1535.8 945 80.2
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1530.4 942 79.5
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1529.6 946 80.4
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1526.5 941 79.8
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1526.1 945 79.5
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1525.0 945 80.5
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1524.6 945 79.5
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1520.0 939 79.6
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1519.2 950 79.1
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1517.7 945 79.2
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1516.5 947 79.5
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1516.5 944 79.8
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1514.6 946 78.6
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1511.1 945 79.4
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1509.6 947 79.2
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1509.6 947 79.2
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1509.6 945 78.9
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1509.6 957 78.7
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1508.8 945 78.9
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1507.7 943 79.5
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1506.5 943 79.5
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1506.5 943 79.4
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1502.3 943 79.2
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1500.7 943 78.9
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1500.7 944 78.4
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1498.8 944 79.0
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1496.5 946 78.0
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1496.1 943 78.4
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1496.1 945 78.5
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1495.7 945 78.8
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1492.2 943 78.6
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1489.9 941 77.9
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1489.6 944 77.3
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1489.2 943 77.1
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1488.4 943 77.0
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1484.9 942 77.2
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1484.2 944 76.9
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1481.1 945 77.5
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1481.1 945 77.6
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1477.2 957 76.7
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1476.5 939 76.8
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1474.9 951 76.6
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1474.1 950 76.7
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1471.8 941 77.0
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1471.1 943 76.6
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1470.7 953 76.3
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1470.3 942 76.9
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1469.5 940 76.4
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1469.1 948 76.5
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1469.1 954 76.2
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1466.4 947 76.6
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1466.4 942 77.5
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1465.3 935 76.7
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1464.9 953 75.9
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1464.9 943 76.4
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1464.1 940 77.0
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1463.0 956 76.3
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1462.6 949 76.2
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1461.8 952 75.9
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1461.0 953 76.1
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1459.5 956 75.7
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1459.1 957 76.0
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1459.1 945 76.3
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1457.6 944 76.4
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1442.2 945 75.9
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1441.4 937 76.0
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1439.1 983 73.6
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1438.7 947 76.3
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1438.3 937 75.8
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1430.6 937 75.3
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1428.3 951 74.0
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1425.2 944 75.6
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1418.3 936 75.1
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1387.5 937 72.9
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1378.2 943 72.7
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1377.1 941 70.4
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1375.1 953 69.8
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1360.9 832 80.8
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1327.4 939 70.0
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1306.6 944 68.2
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1289.2 935 70.2
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1278.1 855 74.9
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1255.0 845 74.4
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1178.7 734 78.9
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1177.2 951 61.8
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1176.4 983 59.9
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1165.6 942 64.6
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1116.7 701 78.6
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1104.0 1007 54.8
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1087.8 937 59.0
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 1.3e-291 1006.5 666 74.9
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 1.9e-290 1002.7 634 77.3
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 3.0e-267 925.6 701 65.0
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 4.5e-223 778.9 763 52.0
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 1.1e-200 704.5 463 74.3
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 6.5e-182 642.1 441 71.4
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.9e-121 440.7 303 70.0
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 7.4e-109 399.4 631 38.4
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 2.4e-107 394.4 1310 25.0
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 2.6e-77 294.7 202 72.8
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 4.5e-74 283.9 207 71.0
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.8e-59 235.3 181 65.7
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 7.5e-53 213.4 295 42.4
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 5.9e-50 203.8 110 86.4
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 1.1e-43 183.0 116 75.0
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 4.4e-37 161.0 139 59.7
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.4e-35 156.0 196 42.9
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 7.6e-29 133.7 64 92.2
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 2.4e-14 85.5 80 55.0


User provided reference genes

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