Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 0.0e+00 1306.6 671 100.0
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 0.0e+00 1275.8 671 97.3
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 0.0e+00 1273.1 671 97.0
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1236.5 676 94.8
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1236.1 669 94.9
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1235.3 669 94.8
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 0.0e+00 1225.3 674 94.5
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 0.0e+00 1224.5 672 94.0
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1220.7 683 93.0
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 0.0e+00 1214.1 691 91.9
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 0.0e+00 1207.2 700 90.1
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1171.0 669 88.5
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 0.0e+00 1114.0 652 88.7
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1109.7 664 84.3
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1109.7 671 83.6
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1109.4 671 83.5
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1102.8 668 82.9
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1094.0 661 82.9
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1092.8 661 82.3
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1091.3 667 82.9
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1090.9 662 82.3
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1090.5 662 82.8
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1089.7 662 82.8
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1088.9 668 81.4
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1088.2 662 82.3
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1087.4 663 81.9
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1085.9 662 82.3
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1083.9 662 82.5
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1083.6 662 83.2
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 0.0e+00 1082.8 663 81.7
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1082.0 668 82.0
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1081.6 661 82.9
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1080.1 661 82.1
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1079.7 663 82.5
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1079.7 659 81.9
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1079.3 663 82.1
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1078.5 661 81.7
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 0.0e+00 1078.2 593 93.3
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1077.8 663 81.7
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1077.8 665 82.1
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1077.4 689 79.7
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1076.6 662 81.9
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1075.8 663 81.6
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1075.5 661 81.5
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 4.6e-312 1074.7 659 81.3
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 9.2e-312 1073.2 661 80.9
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 3.2e-311 1071.2 662 81.4
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 1.2e-310 1069.3 655 82.3
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.2e-310 1069.3 645 83.1
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 2.0e-310 1068.5 661 81.2
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 3.5e-310 1067.8 662 81.6
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 5.0e-309 1063.9 649 82.1
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 5.0e-309 1063.9 649 82.1
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 8.6e-309 1063.1 663 81.3
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 1.9e-308 1062.0 663 81.3
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 4.2e-308 1060.8 662 80.1
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 2.1e-307 1058.5 659 81.3
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 2.3e-306 1055.0 694 78.7
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 1.2e-305 1052.7 701 76.9
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 2.6e-305 1051.6 670 80.9
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 2.6e-305 1051.6 662 79.9
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 2.6e-305 1051.6 679 78.4
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 3.4e-305 1051.2 659 79.8
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 9.8e-305 1049.7 666 80.2
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 2.2e-304 1048.5 658 79.6
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 7.8e-302 1040.0 664 77.7
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 1.3e-301 1039.3 668 79.2
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 1.7e-301 1038.9 661 78.4
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 2.9e-301 1038.1 661 78.7
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 2.1e-299 1031.9 691 77.6
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 2.8e-299 1031.6 664 77.6
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 1.8e-298 1028.9 663 77.8
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 6.8e-298 1026.9 664 77.3
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.5e-297 1025.8 674 76.3
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 2.9e-296 1021.5 678 78.3
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 1.7e-293 1012.3 663 77.2
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 5.2e-290 1000.7 647 76.0
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 7.5e-289 996.9 641 77.7
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 1.1e-287 993.0 721 71.4
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 3.6e-283 978.0 745 70.2
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 6.0e-278 960.7 683 73.6
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 6.8e-274 947.2 661 73.8
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 7.1e-271 937.2 644 71.9
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 3.5e-270 934.9 661 71.7
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 8.7e-269 930.2 595 79.2
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 1.1e-268 929.9 672 72.8
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 2.8e-267 925.2 581 78.7
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 6.2e-267 924.1 668 70.1
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 1.2e-265 919.8 650 71.1
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 9.6e-260 900.2 672 67.7
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 6.9e-258 894.0 667 70.6
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 5.3e-250 867.8 654 69.6
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 3.4e-249 865.1 509 82.3
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 3.8e-248 861.7 662 68.6
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.5e-241 839.7 638 68.7
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.3e-240 836.6 702 64.0
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 8.7e-237 823.9 701 63.1
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 2.4e-226 789.3 443 86.9
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 3.2e-207 725.7 465 75.7
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 9.1e-202 707.6 679 54.5
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 3.5e-177 625.9 535 63.2
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 2.3e-176 623.2 674 50.6
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 6.4e-171 605.1 668 50.3
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 9.2e-170 601.3 382 75.9
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 3.1e-165 586.3 363 81.0
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 2.6e-164 583.2 355 82.0
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 5.6e-159 565.5 353 80.5
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.8e-157 560.5 374 76.7
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 1.6e-142 510.8 304 83.6
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 3.9e-136 489.6 304 79.3
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 3.3e-135 486.5 367 70.0
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 5.6e-135 485.7 630 49.0
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 4.8e-134 482.6 306 78.4
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 1.0e-112 411.8 296 73.3
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 1.3e-107 394.8 467 51.2
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 5.2e-80 303.1 213 71.4
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 6.8e-80 302.8 215 71.2
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 6.1e-65 253.1 175 74.3
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 7.5e-55 219.5 219 57.5
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 9.8e-55 219.2 234 56.8
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 2.3e-51 208.0 104 90.4
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 3.6e-49 200.7 249 49.0
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 8.1e-49 199.5 148 66.2
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 2.8e-41 174.5 546 34.8
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 2.3e-35 154.8 127 63.8
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 2.5e-34 151.4 400 31.8
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 4.3e-34 150.6 86 89.5
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 5.8e-31 140.2 87 77.0
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 2.2e-30 138.3 87 75.9
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.9e-29 135.2 87 74.7
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 5.6e-26 123.6 98 62.2
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 1.3e-25 122.5 86 74.4
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 9.9e-23 112.8 114 50.9
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 5.4e-21 107.1 68 83.8
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 2.7e-20 104.8 82 70.7
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 3.5e-20 104.4 68 80.9
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 1.6e-17 95.5 55 83.6
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.2e-15 89.4 82 62.2
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 1.0e-14 86.3 97 55.7
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 1.7e-14 85.5 49 89.8
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 2.9e-14 84.7 174 35.6
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 6.5e-14 83.6 54 72.2
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 8.4e-14 83.2 49 85.7
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.1e-13 82.8 71 67.6
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 3.2e-13 81.3 83 59.0
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 2.3e-11 75.1 63 66.7
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 9.6e-10 69.7 37 86.5
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 1.3e-09 69.3 68 48.5
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 3.1e-08 64.7 105 41.9
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 6.9e-08 63.5 43 62.8
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 2.2e-06 58.5 40 77.5
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 6.5e-06 57.0 40 60.0
PGSC0003DMG402017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 8.4e-06 56.6 46 67.4


User provided reference genes

Program Settings