Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 1.6e-88 329.7 203 100.0
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 1.8e-84 316.2 203 95.6
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 4.0e-84 315.1 203 95.6
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 5.2e-84 314.7 203 92.6
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 4.4e-83 311.6 203 88.7
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 3.7e-82 308.5 203 92.6
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 3.7e-82 308.5 203 88.2
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 5.4e-81 304.7 199 87.9
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 3.3e-78 295.4 204 85.8
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 3.3e-78 295.4 203 88.7
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 3.1e-76 288.9 204 85.3
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 5.4e-73 278.1 220 72.3
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 1.2e-72 276.9 199 79.9
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 6.0e-72 274.6 201 82.6
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 3.0e-71 272.3 277 66.1
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 8.6e-71 270.8 199 78.9
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 8.6e-71 270.8 199 78.9
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 1.9e-70 269.6 199 78.4
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 2.5e-70 269.2 201 79.6
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 3.3e-70 268.9 200 83.0
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 4.3e-70 268.5 200 79.0
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 9.5e-70 267.3 199 78.4
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 1.2e-69 266.9 202 83.7
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 1.6e-69 266.5 202 80.7
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 2.8e-69 265.8 202 83.7
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 2.8e-69 265.8 202 84.2
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 2.8e-69 265.8 202 84.2
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 3.6e-69 265.4 203 79.8
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 6.2e-69 264.6 199 77.4
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 8.1e-69 264.2 200 84.5
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 8.1e-69 264.2 200 78.0
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.1e-68 263.8 202 83.7
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 1.8e-68 263.1 201 83.6
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 4.0e-68 261.9 202 83.2
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 6.8e-68 261.2 200 83.5
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 6.8e-68 261.2 200 85.5
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 8.9e-68 260.8 200 83.0
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 1.2e-67 260.4 200 85.5
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 1.2e-67 260.4 200 85.5
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.5e-67 260.0 194 86.1
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 1.5e-67 260.0 202 82.7
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 2.0e-67 259.6 200 78.0
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 2.0e-67 259.6 201 78.1
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 2.0e-67 259.6 201 84.1
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 3.4e-67 258.8 199 82.9
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 3.4e-67 258.8 205 80.0
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 4.4e-67 258.5 201 78.6
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 4.4e-67 258.5 199 77.4
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 4.4e-67 258.5 199 77.4
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 5.8e-67 258.1 201 75.6
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 5.8e-67 258.1 199 84.4
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 5.8e-67 258.1 202 81.7
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 5.8e-67 258.1 200 78.5
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 9.9e-67 257.3 201 84.1
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 9.9e-67 257.3 199 76.9
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 1.3e-66 256.9 202 84.7
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 1.3e-66 256.9 199 77.9
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 1.7e-66 256.5 193 78.8
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.7e-66 256.5 201 79.6
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 2.2e-66 256.1 203 82.8
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 2.9e-66 255.8 197 82.7
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 2.9e-66 255.8 201 76.6
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 3.7e-66 255.4 201 76.6
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 6.4e-66 254.6 200 76.0
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 8.4e-66 254.2 199 76.4
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 8.4e-66 254.2 200 76.0
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 1.1e-65 253.8 198 76.8
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 1.4e-65 253.4 202 75.7
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 1.9e-65 253.1 200 75.5
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 2.4e-65 252.7 202 81.2
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 7.1e-65 251.1 200 80.5
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 9.2e-65 250.8 200 82.0
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 1.2e-64 250.4 197 81.7
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 1.6e-64 250.0 201 75.6
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 2.1e-64 249.6 201 82.1
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 4.6e-64 248.4 201 75.1
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 4.6e-64 248.4 199 81.4
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 6.0e-64 248.1 200 75.5
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.0e-64 248.1 211 72.0
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 7.8e-64 247.7 211 72.0
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 7.8e-64 247.7 200 72.0
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 1.0e-63 247.3 200 73.0
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.7e-63 246.5 211 71.6
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 1.7e-63 246.5 201 78.1
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 1.7e-63 246.5 201 78.1
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.3e-63 246.1 197 75.6
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 5.1e-63 245.0 202 78.7
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 1.5e-62 243.4 202 74.3
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 7.3e-62 241.1 204 73.5
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 9.6e-62 240.7 202 77.2
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 9.6e-62 240.7 199 69.8
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 1.2e-61 240.4 197 74.1
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 1.2e-61 240.4 195 81.5
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 6.2e-61 238.0 154 87.0
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 8.1e-61 237.7 199 73.9
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.4e-60 236.9 199 73.9
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 1.4e-60 236.9 161 86.3
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 4.0e-60 235.3 201 72.1
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 5.2e-60 235.0 202 75.2
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.2e-59 233.8 199 72.4
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.5e-59 233.4 197 80.2
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 3.4e-59 232.3 240 62.5
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 4.4e-59 231.9 202 72.3
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.2e-56 223.8 153 75.8
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.6e-56 221.9 160 81.2
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 6.0e-56 221.5 203 68.5
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 1.7e-55 219.9 194 75.3
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 9.0e-52 207.6 294 53.7
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 4.9e-50 201.8 147 66.7
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 3.2e-49 199.1 145 66.2
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 4.6e-48 195.3 199 64.3
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 7.9e-48 194.5 140 68.6
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 1.7e-47 193.4 107 86.0
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 3.9e-47 192.2 204 59.3
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.5e-46 189.5 199 57.3
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 4.3e-46 188.7 199 56.3
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 4.5e-43 178.7 223 63.2
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 7.6e-43 177.9 158 72.8
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 9.9e-43 177.6 192 63.0
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.3e-39 166.4 142 66.9
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 3.3e-38 162.5 122 83.6
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 4.0e-36 155.6 143 57.3
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 6.9e-36 154.8 225 48.4
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.7e-34 150.2 123 68.3
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 4.2e-33 145.6 279 50.2
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.2e-32 144.1 209 55.0
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 2.1e-32 143.3 227 52.4
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 8.7e-31 137.9 202 49.0
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.3e-23 113.2 150 44.7
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 2.4e-20 103.2 214 42.1
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 1.9e-17 93.6 95 74.7
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 7.9e-16 88.2 205 36.6
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 1.4e-15 87.4 90 75.6
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 3.4e-11 72.8 46 80.4
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 4.7e-08 62.4 172 26.2


User provided reference genes

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