Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0002s0211 Capsella rubella HOM05D007086 ORTHO05D008927 2.8e-35 151.4 74 100.0
AL2G12840 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 6.6e-29 130.2 74 89.2
AT1G62886 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 1.3e-27 125.9 74 87.8
Thhalv10029420m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 2.2e-24 115.2 68 82.4
AL1G23730 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 2.5e-20 101.7 69 68.1
AT1G12400 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 3.3e-20 101.3 69 66.7
THA.LOC104809439 Tarenaya hassleriana HOM05D007086 ORTHO05D008927 4.3e-20 100.9 69 69.6
BolC5t29822H Brassica oleracea HOM05D007086 ORTHO05D008927 9.6e-20 99.8 69 68.1
BraA06t24109Z Brassica rapa HOM05D007086 ORTHO05D008927 9.6e-20 99.8 69 68.1
CARHR012690 Cardamine hirsuta HOM05D007086 ORTHO05D008927 1.3e-19 99.4 74 66.2
CARHR048860 Cardamine hirsuta HOM05D007086 ORTHO05D008927 1.3e-19 99.4 73 69.9
Sp1g11000 Schrenkiella parvula HOM05D007086 ORTHO05D008927 1.3e-19 99.4 69 66.7
Aa31LG1G2230 Aethionema arabicum HOM05D007086 ORTHO05D008927 1.6e-19 99.0 69 69.6
Carub.0001s1205 Capsella rubella HOM05D007086 ORTHO05D008927 1.6e-19 99.0 69 63.8
Prupe.5G081100 Prunus persica HOM05D007086 ORTHO05D008927 8.1e-19 96.7 69 65.2
CSS0011774 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 1.1e-18 96.3 72 66.7
CSS0048716 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 1.1e-18 96.3 72 66.7
Thhalv10023898m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 1.4e-18 95.9 78 65.4
Thhalv10009271m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 1.8e-18 95.5 69 65.2
MD04G1245800 Malus domestica HOM05D007086 ORTHO05D008927 1.8e-18 95.5 69 65.2
MD12G1192500 Malus domestica HOM05D007086 ORTHO05D008927 1.8e-18 95.5 69 65.2
RcHm_v2.0_Chr7g0201071 Rosa chinensis HOM05D007086 ORTHO05D008927 1.8e-18 95.5 69 68.1
Thecc.03G263200 Theobroma cacao HOM05D007086 ORTHO05D008927 1.8e-18 95.5 69 68.1
BcaB03g13189 Brassica carinata HOM05D007086 ORTHO05D008927 2.4e-18 95.1 69 63.8
Potri.001G116000 Populus trichocarpa HOM05D007086 ORTHO05D008927 2.4e-18 95.1 69 66.7
Rhsim07G0100800 Rhododendron simsii HOM05D007086 ORTHO05D008927 3.1e-18 94.7 72 63.9
GSVIVG01019940001 Vitis vinifera HOM05D007086 ORTHO05D008927 3.1e-18 94.7 72 63.9
QL12p015352 Quercus lobata HOM05D007086 ORTHO05D008927 4.0e-18 94.4 69 66.7
Cfa012029 Carpinus fangiana HOM05D007086 ORTHO05D008927 5.3e-18 94.0 72 65.3
FAN08G0246 Fragaria x ananassa HOM05D007086 ORTHO05D008927 5.3e-18 94.0 69 66.7
Manes.02G032611 Manihot esculenta HOM05D007086 ORTHO05D008927 5.3e-18 94.0 69 65.2
EL10Ac7g17105 Beta vulgaris HOM05D007086 ORTHO05D008927 1.2e-17 92.8 69 63.8
Actinidia05249 Actinidia chinensis HOM05D001611 ORTHO05D001464 1.5e-17 92.4 72 62.5
Sed0003691 Sechium edule HOM05D007086 ORTHO05D008927 1.5e-17 92.4 69 63.8
BolC8t49170H Brassica oleracea HOM05D007086 ORTHO05D008927 2.0e-17 92.0 69 62.3
CANSAT21G1174 Cannabis sativa HOM05D007086 ORTHO05D008927 2.0e-17 92.0 69 65.2
CDE11G0364 Ceratophyllum demersum HOM05D007086 ORTHO05D008927 2.6e-17 91.7 69 63.8
Sabra01G0089100 Salix brachista HOM05D007086 ORTHO05D008927 4.5e-17 90.9 69 65.2
Hma1.2p1_0367F.1_g137100 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 5.8e-17 90.5 69 63.8
Hma1.2p1_3825F.1_g337656 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 5.8e-17 90.5 69 63.8
Os07g0573600 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 5.8e-17 90.5 69 63.8
Sc01g0009150 Simmondsia chinensis HOM05D007086 ORTHO05D008927 5.8e-17 90.5 69 62.3
Cpa.g.sc29.74 Carica papaya HOM05D007086 ORTHO05D008927 7.6e-17 90.1 69 63.8
Eucgr.E00483 Eucalyptus grandis HOM05D007086 ORTHO05D008927 7.6e-17 90.1 69 62.3
Potri.009G138800 Populus trichocarpa HOM05D007086 ORTHO05D008927 7.6e-17 90.1 69 63.8
CiPaw.11G146300 Carya illinoinensis HOM05D007086 ORTHO05D008927 9.9e-17 89.7 69 65.2
PSO478G4385 Papaver somniferum HOM05D007086 ORTHO05D008927 9.9e-17 89.7 72 61.1
Medtr5g055890 Medicago truncatula HOM05D007086 ORTHO05D008927 1.3e-16 89.4 68 61.8
Dinv00491 Davidia involucrata HOM05D007086 ORTHO05D008927 1.7e-16 89.0 72 61.1
Os05g0198700 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 1.7e-16 89.0 69 62.3
PGR031G3010 Punica granatum HOM05D007086 ORTHO05D008927 1.7e-16 89.0 69 60.9
Glyma.05G239900 Glycine max HOM05D007086 ORTHO05D008927 2.2e-16 88.6 68 61.8
Glyma.08G047000 Glycine max HOM05D007086 ORTHO05D008927 2.2e-16 88.6 68 61.8
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 3.8e-16 87.8 68 61.8
Phvul.009G128900 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 3.8e-16 87.8 68 64.7
Atru.chr9.1458 Acer truncatum HOM05D007086 ORTHO05D008927 4.9e-16 87.4 72 59.7
Lalb_Chr05g0222151 Lupinus albus HOM05D007086 ORTHO05D008927 4.9e-16 87.4 68 60.3
Lj4g0021147 Lotus japonicus HOM05D007086 ORTHO05D008927 6.4e-16 87.0 68 60.3
SalBow6G6939 Salvia bowleyana HOM05D007086 ORTHO05D008927 6.4e-16 87.0 74 58.1
SGA_v2.0_scaffold37G14847 Striga asiatica HOM05D007086 ORTHO05D008927 6.4e-16 87.0 74 59.5
TWI60G0887 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 6.4e-16 87.0 72 59.7
CsaV3_3G003270 Cucumis sativus L. HOM05D007086 ORTHO05D008927 8.4e-16 86.7 69 60.9
Phvul.002G322200 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 8.4e-16 86.7 68 61.8
Duzib084G0284 Durio zibethinus HOM05D007086 ORTHO05D008927 1.1e-15 86.3 69 62.3
ClCG00G001010 Citrullus lanatus HOM05D007086 ORTHO05D008927 1.4e-15 85.9 69 60.9
PSO782G0332 Papaver somniferum HOM05D007086 ORTHO05D008927 1.9e-15 85.5 72 58.3
Nn1g01223 Nelumbo nucifera HOM05D007086 ORTHO05D008927 2.4e-15 85.1 72 58.3
Rhsim02G0196200 Rhododendron simsii HOM05D007086 ORTHO05D008927 2.4e-15 85.1 66 62.1
Peaxi162Scf00051g00316 Petunia axillaris HOM05D007086 ORTHO05D008927 4.2e-15 84.3 72 58.3
Peaxi162Scf00078g00627 Petunia axillaris HOM05D007086 ORTHO05D008927 4.2e-15 84.3 72 58.3
FAN12G2970 Fragaria x ananassa HOM05D007086 ORTHO05D008927 5.4e-15 84.0 72 61.1
FAN12G3233 Fragaria x ananassa HOM05D007086 ORTHO05D008927 5.4e-15 84.0 72 61.1
Gohir.A12G221900 Gossypium hirsutum HOM05D007086 ORTHO05D008927 5.4e-15 84.0 69 59.4
Gohir.D12G224400 Gossypium hirsutum HOM05D007086 ORTHO05D008927 5.4e-15 84.0 69 59.4
Gorai.008G240500 Gossypium raimondii HOM05D007086 ORTHO05D008927 5.4e-15 84.0 69 59.4
TPR.G38364 Trifolium pratense HOM05D007086 ORTHO05D008927 5.4e-15 84.0 68 58.8
Cc08_g13390 Coffea canephora HOM05D007086 ORTHO05D008927 7.1e-15 83.6 69 60.9
HanXRQChr02g0046221 Helianthus annuus HOM05D007086 ORTHO05D008927 2.1e-14 82.0 72 56.9
SGA_v2.0_scaffold511G52628 Striga asiatica HOM05D007086 ORTHO05D008927 2.1e-14 82.0 69 58.0
Solyc08g079610.3 Solanum lycopersicum HOM05D007086 ORTHO05D008927 4.6e-14 80.9 72 54.2
Sopen08g027960 Solanum pennellii HOM05D007086 ORTHO05D008927 4.6e-14 80.9 72 54.2
PGSC0003DMG400019087 Solanum tuberosum HOM05D007086 ORTHO05D008927 4.6e-14 80.9 72 54.2
Rhsim02G0194900 Rhododendron simsii HOM05D007086 ORTHO05D008927 6.0e-14 80.5 64 62.5
AagrBONN_evm.TU.Sc2ySwM_362.2353 Anthoceros agrestis HOM05D002603 ORTHO05D008927 7.9e-14 80.1 69 50.7
Mapoly0088s0021 Marchantia polymorpha HOM05D007086 ORTHO05D008927 7.9e-14 80.1 69 53.6
PGSC0003DMG400003953 Solanum tuberosum HOM05D007086 ORTHO05D008927 1.3e-13 79.3 72 52.8
Migut.A00849 Erythranthe guttata HOM05D007086 ORTHO05D008927 3.0e-13 78.2 67 56.7
Migut.I00707 Erythranthe guttata HOM05D007086 ORTHO05D008927 3.0e-13 78.2 67 56.7
Prupe.5G081200 Prunus persica HOM05D007086 ORTHO05D008927 3.9e-13 77.8 57 64.9
MD06G1064000 Malus domestica HOM05D007086 ORTHO05D008927 5.1e-13 77.4 62 62.9
FAN18G4230 Fragaria x ananassa HOM05D001611 ORTHO05D001464 1.5e-12 75.9 57 66.7
MBI12_g10752_MAGBIO Magnolia biondii HOM05D007086 ORTHO05D008927 1.5e-12 75.9 69 56.5
C08p15410 Brassica napus HOM05D001611 ORTHO05D001464 1.9e-12 75.5 60 58.3
SEGI_31798 Sequoiadendron giganteum HOM05D007086 ORTHO05D008927 3.3e-12 74.7 69 52.2
BraA08t35207Z Brassica rapa HOM05D001611 ORTHO05D001464 4.3e-12 74.3 60 56.7
arahy.Tifrunner.gnm1.ann1.NIEM70 Arachis hypogaea HOM05D007086 ORTHO05D008927 5.6e-12 73.9 76 50.0
Aqoxy7G00621 Aquilegia oxysepala HOM05D007086 ORTHO05D008927 9.6e-12 73.2 64 57.8
Ciclev10024015m.g Citrus clementina HOM05D007086 ORTHO05D008927 3.7e-11 71.2 60 56.7
Pp3c1_34050 Physcomitrium patens HOM05D007086 ORTHO05D008927 6.2e-11 70.5 69 43.5
Lj4g0007995 Lotus japonicus HOM05D007086 ORTHO05D008927 8.1e-11 70.1 70 48.6
Zm00001eb267070 Zea mays HOM05D007086 ORTHO05D008927 1.1e-10 69.7 57 57.9
Nitab4.5_0000633g0050 Nicotiana tabacum HOM05D007086 ORTHO05D008927 1.2e-09 66.2 69 52.2
MELO3C013994.2 Cucumis melo HOM05D000693 ORTHO05D001102 1.5e-09 65.9 65 53.8
arahy.Tifrunner.gnm1.ann1.T092PF Arachis hypogaea HOM05D007086 ORTHO05D008927 2.6e-09 65.1 64 48.4
Nitab4.5_0007130g0020 Nicotiana tabacum HOM05D007086 ORTHO05D008927 2.6e-09 65.1 60 56.7
ClCG00G001020 Citrullus lanatus HOM05D000693 ORTHO05D001102 3.4e-09 64.7 57 56.1
CAN.G630.56 Capsicum annuum HOM05D007086 ORTHO05D008927 7.6e-09 63.5 64 51.6
A08p32850 Brassica napus HOM05D001611 ORTHO05D001464 1.3e-08 62.8 52 55.8
Lsat_1_v5_gn_6_9641 Lactuca sativa HOM05D007086 ORTHO05D008927 1.3e-08 62.8 62 54.8
Nitab4.5_0005241g0010 Nicotiana tabacum HOM05D007086 ORTHO05D008927 1.3e-08 62.8 61 52.5
TWI77G0094 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 1.3e-08 62.8 57 56.1
Dinv08998 Davidia involucrata HOM05D007086 ORTHO05D008927 1.7e-08 62.4 34 82.4
CBR_g51826 Chara braunii HOM05D007086 ORTHO05D008927 2.9e-08 61.6 68 41.2
MCO09G617 Micromonas commoda HOM05D007086 ORTHO05D008927 1.2e-06 56.2 68 35.3
Lalb_Chr18g0049811 Lupinus albus HOM05D007086 ORTHO05D008927 6.0e-06 53.9 53 50.9
Os05g0108500 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 7.9e-06 53.5 59 47.5


User provided reference genes

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