Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s1565 Capsella rubella HOM05D000399 ORTHO05D010012 1.0e-99 366.7 182 100.0
AL1G28000 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 2.7e-63 245.7 185 71.4
AT4G00420 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 1.1e-61 240.4 177 70.6
CARHR016360 Cardamine hirsuta HOM05D000399 ORTHO05D010012 4.0e-51 205.3 170 64.7
Sp1g14150 Schrenkiella parvula HOM05D000399 ORTHO05D010012 3.6e-44 182.2 187 59.9
A06p11910 Brassica napus HOM05D002847 ORTHO05D003155 9.5e-37 157.5 184 51.6
C05p14090 Brassica napus HOM05D002847 ORTHO05D003155 9.5e-37 157.5 175 53.7
BraA06t24361Z Brassica rapa HOM05D002847 ORTHO05D003155 1.2e-36 157.1 184 51.6
BolC5t30140H Brassica oleracea HOM05D002847 ORTHO05D003155 1.8e-35 153.3 176 52.3
BcaC05g30483 Brassica carinata HOM05D000399 ORTHO05D010012 1.3e-33 147.1 161 52.2
Thhalv10009652m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 4.1e-32 142.1 102 66.7
Aa31LG7G440 Aethionema arabicum HOM05D000399 ORTHO05D010012 8.1e-28 127.9 108 58.3
THA.LOC104812446 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 1.2e-23 114.0 188 44.7
THA.LOC104813580 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 7.8e-23 111.3 173 43.4
AL2G40790 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 8.7e-22 107.8 137 44.5
Duzib160G0247 Durio zibethinus HOM05D000399 ORTHO05D010012 2.5e-21 106.3 101 53.5
Thhalv10019137m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 5.6e-21 105.1 173 40.5
arahy.Tifrunner.gnm1.ann1.E6VFRG Arachis hypogaea HOM05D000399 ORTHO05D010012 9.6e-21 104.4 117 41.0
A02p23280 Brassica napus HOM05D000399 ORTHO05D010012 1.3e-20 104.0 182 40.1
CARHR073870 Cardamine hirsuta HOM05D000399 ORTHO05D010012 1.6e-20 103.6 179 41.3
BcaC03g15940 Brassica carinata HOM05D000399 ORTHO05D010012 2.1e-20 103.2 169 40.2
Prupe.3G095800 Prunus persica HOM05D000399 ORTHO05D010012 4.8e-20 102.1 103 48.5
BcaB05g25237 Brassica carinata HOM05D000399 ORTHO05D010012 8.1e-20 101.3 173 39.3
BraA02t07324Z Brassica rapa HOM05D000399 ORTHO05D010012 1.8e-19 100.1 187 39.0
C02p37020 Brassica napus HOM05D000399 ORTHO05D010012 2.4e-19 99.8 169 40.2
BolC2t09718H Brassica oleracea HOM05D000134 ORTHO05D002396 3.1e-19 99.4 174 39.1
COL.COLO4_26655 Corchorus olitorius HOM05D000399 ORTHO05D010012 4.0e-19 99.0 106 45.3
BolC6t40403H Brassica oleracea HOM05D000134 ORTHO05D002396 6.9e-19 98.2 85 51.8
Aa31LG4G930 Aethionema arabicum HOM05D000399 ORTHO05D010012 5.8e-18 95.1 170 41.2
Duzib235G0300 Durio zibethinus HOM05D000399 ORTHO05D010012 5.8e-18 95.1 91 48.4
MD15G1157600 Malus domestica HOM05D000399 ORTHO05D000304 9.9e-18 94.4 122 42.6
Ciclev10026528m.g Citrus clementina HOM05D000399 ORTHO05D010012 1.3e-17 94.0 121 43.0
Eucgr.J03093 Eucalyptus grandis HOM05D000399 ORTHO05D010012 2.2e-17 93.2 103 48.5
Carub.0002s2691 Capsella rubella HOM05D000399 ORTHO05D010012 2.9e-17 92.8 188 35.1
Ca_01025_v3 Cicer arietinum L. HOM05D000263 ORTHO05D000213 6.4e-17 91.7 92 43.5
QL05p034335 Quercus lobata HOM05D000399 ORTHO05D010012 8.4e-17 91.3 120 44.2
Cpa.g.sc10.115 Carica papaya HOM05D000399 ORTHO05D010012 1.9e-16 90.1 96 52.1
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 1.9e-16 90.1 179 33.5
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 1.9e-16 90.1 179 33.5
Gohir.A09G091200 Gossypium hirsutum HOM05D000399 ORTHO05D010012 1.9e-16 90.1 84 50.0
Sp5g35110 Schrenkiella parvula HOM05D000399 ORTHO05D010012 1.9e-16 90.1 195 36.9
TPR.G19174 Trifolium pratense HOM05D000399 ORTHO05D010012 1.9e-16 90.1 112 42.9
Potri.003G179700 Populus trichocarpa HOM05D000399 ORTHO05D010012 2.4e-16 89.7 84 53.6
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 4.2e-16 89.0 99 48.5
Phvul.005G180800 Phaseolus vulgaris HOM05D000399 ORTHO05D010012 4.2e-16 89.0 106 43.4
vmacro19037 Vaccinium macrocarpon HOM05D000399 ORTHO05D010012 5.4e-16 88.6 77 55.8
Cpa.g.sc12.176 Carica papaya HOM05D000399 ORTHO05D010012 9.3e-16 87.8 83 49.4
Nn8g39754 Nelumbo nucifera HOM05D000399 ORTHO05D000304 9.3e-16 87.8 122 40.2
Gorai.006G107400 Gossypium raimondii HOM05D000399 ORTHO05D010012 1.6e-15 87.0 84 48.8
Nitab4.5_0001454g0050 Nicotiana tabacum HOM05D000399 ORTHO05D010012 2.1e-15 86.7 85 48.2
Thecc.06G038100 Theobroma cacao HOM05D000399 ORTHO05D010012 2.1e-15 86.7 170 34.7
Cfa001902 Carpinus fangiana HOM05D000399 ORTHO05D010012 3.5e-15 85.9 101 46.5
ClCG07G012380 Citrullus lanatus HOM05D000399 ORTHO05D010012 3.5e-15 85.9 86 45.3
HanXRQChr12g0356941 Helianthus annuus HOM05D000399 ORTHO05D000304 3.5e-15 85.9 118 40.7
Manes.04G105300 Manihot esculenta HOM05D000399 ORTHO05D010012 3.5e-15 85.9 85 49.4
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 4.6e-15 85.5 91 45.1
MELO3C010254.2 Cucumis melo HOM05D000399 ORTHO05D000304 4.6e-15 85.5 89 47.2
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 6.0e-15 85.1 83 47.0
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 6.0e-15 85.1 86 45.3
CsaV3_1G028590 Cucumis sativus L. HOM05D000399 ORTHO05D000304 7.9e-15 84.7 93 47.3
Lj7C452G5 Lonicera japonica HOM05D000399 ORTHO05D000304 7.9e-15 84.7 86 47.7
CAN.G407.44 Capsicum annuum HOM05D000399 ORTHO05D010012 1.0e-14 84.3 163 34.4
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 1.0e-14 84.3 124 37.9
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 1.0e-14 84.3 86 46.5
Glyma.15G004500 Glycine max HOM05D000399 ORTHO05D010012 1.8e-14 83.6 93 46.2
Hma1.2p1_0182F.1_g080650 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 1.8e-14 83.6 85 50.6
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 2.3e-14 83.2 147 35.4
Hma1.2p1_0135F.1_g061800 Hydrangea macrophylla HOM05D000399 ORTHO05D010012 2.3e-14 83.2 125 42.4
Sed0002244 Sechium edule HOM05D000399 ORTHO05D000304 3.0e-14 82.8 91 44.0
Aqoxy7G03507 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 3.9e-14 82.4 83 48.2
Manes.11G064002 Manihot esculenta HOM05D000399 ORTHO05D010012 3.9e-14 82.4 87 47.1
Psat5g304480 Pisum sativum HOM05D000399 ORTHO05D010012 3.9e-14 82.4 101 43.6
Duzib168G1954 Durio zibethinus HOM05D000399 ORTHO05D000304 5.1e-14 82.0 87 47.1
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 5.1e-14 82.0 87 47.1
Thecc.09G036900 Theobroma cacao HOM05D000399 ORTHO05D000304 5.1e-14 82.0 92 45.7
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 5.1e-14 82.0 86 44.2
Actinidia18233 Actinidia chinensis HOM05D000399 ORTHO05D010012 6.7e-14 81.6 80 47.5
HanXRQChr16g0500081 Helianthus annuus HOM05D000399 ORTHO05D010012 6.7e-14 81.6 84 44.0
MELO3C017858.2 Cucumis melo HOM05D000399 ORTHO05D010012 8.7e-14 81.3 88 43.2
Gohir.D05G051600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 8.7e-14 81.3 87 47.1
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 8.7e-14 81.3 87 47.1
VMungo1080G1791 Vigna mungo HOM05D000399 ORTHO05D010012 8.7e-14 81.3 110 46.4
Haze_19295 Corylus avellana HOM05D000399 ORTHO05D000304 1.1e-13 80.9 110 40.9
FAN15G2526 Fragaria x ananassa HOM05D032538 ORTHO05D010012 1.5e-13 80.5 84 50.0
Lsat_1_v5_gn_4_85921 Lactuca sativa HOM05D000399 ORTHO05D010012 1.5e-13 80.5 85 45.9
PGR031G2642 Punica granatum HOM05D000399 ORTHO05D010012 2.5e-13 79.7 114 37.7
Sed0016429 Sechium edule HOM05D000399 ORTHO05D010012 3.3e-13 79.3 89 42.7
TWI18G0904 Tripterygium wilfordii HOM05D000399 ORTHO05D010012 3.3e-13 79.3 89 46.1
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 4.3e-13 79.0 146 34.9
PSO832G3766 Papaver somniferum HOM05D000399 ORTHO05D000304 4.3e-13 79.0 125 37.6
TAR626G0740 Trochodendron aralioides HOM05D007151 ORTHO05D009056 4.3e-13 79.0 71 56.3
Lsat_1_v5_gn_5_90720 Lactuca sativa HOM05D000399 ORTHO05D000304 5.6e-13 78.6 133 35.3
PGR142G0104 Punica granatum HOM05D000399 ORTHO05D000304 5.6e-13 78.6 103 41.7
CSS0007492 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 7.4e-13 78.2 95 44.2
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 7.4e-13 78.2 146 36.3
Os09g0416500 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D010012 9.6e-13 77.8 139 35.3
RcHm_v2.0_Chr2g0086421 Rosa chinensis HOM05D000399 ORTHO05D000304 9.6e-13 77.8 91 44.0
AUR62011271 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.3e-12 77.4 84 46.4
Migut.K00362 Erythranthe guttata HOM05D000399 ORTHO05D000304 1.6e-12 77.0 83 47.0
Zm00001eb426330 Zea mays HOM05D000399 ORTHO05D000304 1.6e-12 77.0 139 33.8
CSS0047995 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 2.1e-12 76.6 82 46.3
CsaV3_4G001760 Cucumis sativus L. HOM05D000399 ORTHO05D010012 2.1e-12 76.6 92 42.4
Actinidia38350 Actinidia chinensis HOM05D000399 ORTHO05D000304 2.8e-12 76.3 109 37.6
SGA_v2.0_scaffold5G02750 Striga asiatica HOM05D000399 ORTHO05D010012 3.6e-12 75.9 99 40.4
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 4.8e-12 75.5 113 39.8
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 4.8e-12 75.5 94 43.6
Glyma.17G104100 Glycine max HOM05D000399 ORTHO05D000304 4.8e-12 75.5 82 47.6
QL02p091746 Quercus lobata HOM05D000399 ORTHO05D010012 4.8e-12 75.5 86 43.0
Sabra06G0144400 Salix brachista HOM05D000399 ORTHO05D000304 4.8e-12 75.5 79 48.1
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 4.8e-12 75.5 87 43.7
MSTRG.19631 Avicennia marina HOM05D000399 ORTHO05D000304 6.2e-12 75.1 83 44.6
EL10Ac8g18835 Beta vulgaris HOM05D000399 ORTHO05D000304 6.2e-12 75.1 84 42.9
Glyma.13G156500 Glycine max HOM05D000399 ORTHO05D000304 6.2e-12 75.1 81 49.4
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 6.2e-12 75.1 82 45.1
Ciclev10007241m.g Citrus clementina HOM05D000399 ORTHO05D000304 8.1e-12 74.7 118 35.6
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 8.1e-12 74.7 82 47.6
Potri.006G188800 Populus trichocarpa HOM05D000399 ORTHO05D000304 8.1e-12 74.7 79 48.1
EL10Ac8g18832 Beta vulgaris HOM05D000399 ORTHO05D000304 1.1e-11 74.3 84 41.7
EL10Ac8g18834 Beta vulgaris HOM05D000399 ORTHO05D000304 1.1e-11 74.3 84 41.7
Sopen07g001140 Solanum pennellii HOM05D000399 ORTHO05D000304 1.1e-11 74.3 146 32.9
Sopen03g036060 Solanum pennellii HOM05D000399 ORTHO05D010012 1.4e-11 73.9 72 47.2
Solyc07g005030.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.8e-11 73.6 146 32.9
Lj4g0019891 Lotus japonicus HOM05D000399 ORTHO05D000304 2.4e-11 73.2 112 39.3
SalBow1G6743 Salvia bowleyana HOM05D000399 ORTHO05D000304 2.4e-11 73.2 86 43.0
SGA_v2.0_scaffold183G39849 Striga asiatica HOM05D000399 ORTHO05D000304 2.4e-11 73.2 85 42.4
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 2.4e-11 73.2 94 42.6
Medtr4g116860 Medicago truncatula HOM05D000399 ORTHO05D000304 3.1e-11 72.8 82 45.1
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 4.0e-11 72.4 170 32.4
FAN28G2728 Fragaria x ananassa HOM05D000399 ORTHO05D000304 4.0e-11 72.4 158 31.6
TPR.G15773 Trifolium pratense HOM05D000399 ORTHO05D000304 4.0e-11 72.4 137 34.3
HPP92_005311 Vanilla planifolia HOM05D000399 ORTHO05D000304 4.0e-11 72.4 162 30.9
Lj3g0003967 Lotus japonicus HOM05D000399 ORTHO05D010012 5.3e-11 72.0 89 41.6
Ca_21605_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 6.9e-11 71.6 108 39.8
Sc08g0005100 Simmondsia chinensis HOM05D000399 ORTHO05D010012 9.0e-11 71.2 114 37.7
arahy.Tifrunner.gnm1.ann1.ZFL6Z0 Arachis hypogaea HOM05D000399 ORTHO05D000304 1.2e-10 70.9 83 43.4
CAN.G520.37 Capsicum annuum HOM05D000399 ORTHO05D000304 1.2e-10 70.9 140 32.1
Thhalv10012426m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 1.2e-10 70.9 81 48.1
Cc06_g07320 Coffea canephora HOM05D000399 ORTHO05D000304 1.5e-10 70.5 79 44.3
FAN19G1338 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.0e-10 70.1 157 30.6
Nitab4.5_0004050g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.0e-10 70.1 82 46.3
Psat4g034160 Pisum sativum HOM05D000399 ORTHO05D000304 2.0e-10 70.1 121 36.4
Nitab4.5_0000416g0080 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.6e-10 69.7 82 46.3
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 3.4e-10 69.3 82 43.9
Os04g0509300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 3.4e-10 69.3 135 33.3
Peaxi162Scf00347g00328 Petunia axillaris HOM05D000399 ORTHO05D000304 3.4e-10 69.3 82 45.1
Zm00001eb312740 Zea mays HOM05D000399 ORTHO05D010012 3.4e-10 69.3 82 42.7
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 4.5e-10 68.9 82 42.7
ATR0629G135 Amborella trichopoda HOM05D000399 ORTHO05D000304 5.8e-10 68.6 82 41.5
Aa31LG1G14290 Aethionema arabicum HOM05D000399 ORTHO05D000304 7.6e-10 68.2 83 45.8
FvH4_1g01480 Fragaria vesca HOM05D000399 ORTHO05D000304 7.6e-10 68.2 157 29.9
A10p19620 Brassica napus HOM05D000399 ORTHO05D000304 9.9e-10 67.8 142 33.8
BraA10t44037Z Brassica rapa HOM05D000399 ORTHO05D000304 9.9e-10 67.8 142 33.8
Ah.09g226570 Amaranthus hybridus HOM05D000399 ORTHO05D000304 1.3e-09 67.4 89 37.1
Thhalv10009231m.g Eutrema salsugineum HOM05D002847 ORTHO05D010012 1.3e-09 67.4 79 51.9
BcaB08g36493 Brassica carinata HOM05D000399 ORTHO05D000304 1.7e-09 67.0 80 46.2
Carub.0006s1871 Capsella rubella HOM05D000399 ORTHO05D000304 1.7e-09 67.0 81 46.9
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 2.9e-09 66.2 120 38.3
AT5G20320 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 4.9e-09 65.5 81 45.7
CDE08G0493 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 4.9e-09 65.5 82 41.5
AL6G31870 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 6.4e-09 65.1 106 42.5
BolC9t58455H Brassica oleracea HOM05D000399 ORTHO05D000304 6.4e-09 65.1 134 33.6
THA.LOC104811019 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 8.4e-09 64.7 90 40.0
C09p55870 Brassica napus HOM05D000399 ORTHO05D000304 1.1e-08 64.3 134 33.6
CARHR192510 Cardamine hirsuta HOM05D000399 ORTHO05D000304 2.4e-08 63.2 79 48.1
Hund21616 Selenicereus undatus HOM05D000399 ORTHO05D000304 3.2e-08 62.8 120 34.2
Cpa.g.sc397.6 Carica papaya HOM05D000361 ORTHO05D008498 4.2e-08 62.4 78 43.6
Sp6g24100 Schrenkiella parvula HOM05D000399 ORTHO05D000304 4.2e-08 62.4 138 34.8
ECA232G1568 Erigeron canadensis HOM05D000399 ORTHO05D010012 5.5e-08 62.0 181 31.5
DCAR_008820 Daucus carota HOM05D000399 ORTHO05D000304 9.3e-08 61.2 83 41.0
DCAR_019363 Daucus carota HOM05D000399 ORTHO05D000304 9.3e-08 61.2 87 40.2
arahy.Tifrunner.gnm1.ann1.I9YAW2 Arachis hypogaea HOM05D000399 ORTHO05D010012 1.2e-07 60.8 85 36.5
MD17G1220100 Malus domestica HOM05D000399 ORTHO05D010012 1.2e-07 60.8 52 53.8
DCAR_019361 Daucus carota HOM05D000399 ORTHO05D000304 2.1e-07 60.1 83 41.0
arahy.Tifrunner.gnm1.ann1.F8AJCT Arachis hypogaea HOM05D000399 ORTHO05D010012 2.3e-06 56.6 54 40.7
Haze_16641 Corylus avellana HOM05D000399 ORTHO05D010012 2.3e-06 56.6 50 56.0
Nitab4.5_0006291g0070 Nicotiana tabacum HOM05D000399 ORTHO05D010012 3.0e-06 56.2 52 50.0


User provided reference genes

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