Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 6.3e-114 414.1 204 100.0
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 1.7e-103 379.4 201 92.5
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 1.2e-99 366.7 200 88.5
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 1.5e-99 366.3 201 89.1
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 3.4e-99 365.2 200 88.0
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 3.4e-99 365.2 200 90.0
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 3.7e-98 361.7 200 86.5
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 1.9e-97 359.4 206 86.4
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 3.2e-97 358.6 200 87.5
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 1.2e-96 356.7 200 86.5
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 3.6e-93 345.1 200 85.5
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 3.1e-92 342.0 201 83.1
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 9.8e-91 337.0 204 81.4
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 8.3e-90 334.0 200 80.5
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 1.4e-89 333.2 200 79.0
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 1.9e-89 332.8 199 79.4
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 1.6e-88 329.7 200 77.5
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 6.0e-88 327.8 200 77.5
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 6.0e-88 327.8 179 93.9
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 2.3e-87 325.9 201 77.1
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 3.0e-87 325.5 200 77.0
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 3.9e-87 325.1 200 76.5
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 3.9e-87 325.1 200 76.5
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 6.6e-87 324.3 200 76.5
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 8.6e-87 323.9 200 77.0
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 1.9e-86 322.8 202 76.7
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 2.5e-86 322.4 200 77.0
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 4.3e-86 321.6 199 76.4
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 7.3e-86 320.9 201 76.1
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 9.5e-86 320.5 200 76.0
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 9.5e-86 320.5 200 76.5
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 9.5e-86 320.5 199 77.4
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 1.6e-85 319.7 200 78.0
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 2.8e-85 318.9 200 76.0
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 2.8e-85 318.9 200 75.5
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 3.6e-85 318.5 200 75.5
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 4.7e-85 318.2 200 77.0
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 6.2e-85 317.8 200 76.5
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 6.2e-85 317.8 200 77.5
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 8.1e-85 317.4 202 76.7
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 8.1e-85 317.4 200 77.0
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 2.3e-84 315.8 200 74.5
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 2.3e-84 315.8 200 76.5
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 3.1e-84 315.5 200 76.5
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 3.1e-84 315.5 200 75.5
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 3.1e-84 315.5 200 75.5
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 5.2e-84 314.7 200 75.0
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 6.8e-84 314.3 202 74.3
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 8.9e-84 313.9 200 76.0
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 8.9e-84 313.9 200 76.0
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 1.2e-83 313.5 202 75.2
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 2.0e-83 312.8 201 73.1
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 7.6e-83 310.8 170 91.8
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 4.9e-82 308.1 204 75.5
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 6.4e-82 307.8 200 76.0
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.4e-81 306.6 201 74.1
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.4e-81 306.6 201 74.1
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 3.2e-81 305.4 202 73.8
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 3.2e-81 305.4 200 75.0
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 1.2e-80 303.5 201 72.6
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 6.0e-80 301.2 200 73.5
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 6.6e-79 297.7 200 72.5
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 2.5e-78 295.8 205 71.7
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 7.3e-78 294.3 200 70.5
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 9.6e-78 293.9 200 73.0
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 1.2e-77 293.5 200 71.5
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 2.8e-77 292.4 208 69.2
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 8.1e-77 290.8 200 70.5
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 9.3e-73 277.3 243 59.3
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 9.3e-73 277.3 208 65.4
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 6.0e-72 274.6 202 66.8
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 6.0e-72 274.6 215 64.7
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 7.8e-72 274.2 208 64.4
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 1.7e-71 273.1 169 79.9
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 3.9e-71 271.9 210 61.9
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 1.1e-70 270.4 199 64.3
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 2.5e-70 269.2 200 64.0
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 5.6e-70 268.1 200 71.0
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 9.6e-70 267.3 210 64.3
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 1.3e-69 266.9 201 67.2
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 2.1e-69 266.2 194 67.5
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 8.1e-69 264.2 194 67.0
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 2.4e-68 262.7 260 55.0
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 5.3e-68 261.5 142 85.2
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 6.9e-68 261.2 206 65.0
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 6.9e-68 261.2 194 65.5
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 6.9e-68 261.2 194 65.5
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 1.2e-67 260.4 199 63.8
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 3.4e-67 258.8 199 63.3
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 5.8e-67 258.1 204 63.7
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 1.3e-66 256.9 244 57.0
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 2.2e-66 256.1 199 63.3
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 2.2e-66 256.1 205 62.0
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 2.2e-66 256.1 207 63.3
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 4.9e-66 255.0 199 62.8
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 8.4e-66 254.2 202 64.4
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 8.4e-66 254.2 201 62.2
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 1.4e-65 253.4 200 65.0
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 2.4e-65 252.7 204 61.8
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 3.2e-65 252.3 200 63.5
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 7.1e-65 251.1 167 70.7
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 2.1e-64 249.6 240 52.9
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 2.7e-64 249.2 212 61.8
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 7.9e-64 247.7 167 69.5
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 1.0e-63 247.3 167 69.5
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 1.0e-63 247.3 165 74.5
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 2.3e-63 246.1 203 62.6
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 2.3e-63 246.1 201 62.2
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 3.0e-63 245.7 138 83.3
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 5.1e-63 245.0 201 61.2
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.5e-62 243.4 199 61.3
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 3.3e-62 242.3 188 66.0
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 3.6e-61 238.8 203 59.6
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 4.8e-61 238.4 206 57.3
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 6.2e-61 238.0 206 56.8
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 5.5e-57 224.9 194 61.9
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 3.5e-56 222.2 181 65.7
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 8.7e-55 217.6 154 72.1
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 8.7e-55 217.6 118 85.6
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 8.7e-55 217.6 211 55.9
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 2.5e-54 216.1 138 77.5
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 1.6e-53 213.4 198 59.1
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 1.6e-53 213.4 154 70.1
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 2.1e-53 213.0 178 61.2
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 2.1e-53 213.0 181 63.0
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 6.2e-53 211.5 181 62.4
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 9.0e-52 207.6 117 83.8
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 4.5e-51 205.3 143 67.1
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.7e-50 203.4 107 87.9
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 2.9e-50 202.6 176 58.0
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 2.5e-49 199.5 200 53.5
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 4.2e-49 198.7 136 70.6
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.3e-47 193.7 155 65.2
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 1.1e-44 184.1 169 57.4
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 1.4e-44 183.7 155 62.6
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 3.1e-44 182.6 150 64.0
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 3.1e-44 182.6 159 60.4
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.5e-43 180.3 189 51.9
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 2.6e-43 179.5 158 56.3
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 3.4e-43 179.1 155 60.6
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 3.4e-43 179.1 110 78.2
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 7.6e-43 177.9 114 72.8
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.0e-42 177.6 184 51.1
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 1.3e-42 177.2 198 51.0
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 1.3e-42 177.2 156 60.9
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 2.2e-42 176.4 199 51.8
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 2.2e-42 176.4 199 51.8
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 2.9e-42 176.0 138 65.9
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 6.5e-42 174.9 159 55.3
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 1.1e-41 174.1 158 60.8
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 2.5e-41 172.9 198 50.0
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 2.5e-41 172.9 198 50.0
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 2.5e-41 172.9 198 50.0
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 3.2e-41 172.6 130 69.2
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 8.7e-39 164.5 130 61.5
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 2.5e-38 162.9 130 60.8
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 5.7e-38 161.8 90 84.4
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 4.8e-37 158.7 139 57.6
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 6.9e-36 154.8 83 85.5
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 1.5e-35 153.7 151 58.9
Psat1g000040 Pisum sativum HOM05D003576 ORTHO05D004124 5.9e-35 151.8 83 89.2
arahy.Tifrunner.gnm1.ann1.EX6GR6 Arachis hypogaea HOM05D003576 ORTHO05D004124 5.0e-34 148.7 92 80.4
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.4e-33 147.1 119 62.2
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 2.1e-32 143.3 142 55.6
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 3.6e-32 142.5 157 52.9
arahy.Tifrunner.gnm1.ann1.CPN596 Arachis hypogaea HOM05D003576 ORTHO05D004124 3.1e-28 129.4 82 76.8
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 3.2e-25 119.4 156 43.6
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 9.4e-25 117.9 112 56.2
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 4.8e-21 105.5 125 43.2
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 1.1e-20 104.4 162 37.7
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 2.4e-20 103.2 82 61.0
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 2.4e-20 103.2 143 39.2
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 5.3e-20 102.1 72 72.2
Glyma.09G080600 Glycine max HOM05D003576 ORTHO05D004124 2.2e-18 96.7 57 82.5
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 5.0e-18 95.5 206 33.0
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.1e-16 90.1 51 84.3
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.1e-16 90.1 51 84.3
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 4.7e-16 89.0 51 82.4
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.4e-15 87.4 51 80.4
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 9.1e-12 74.7 154 36.4
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.2e-11 74.3 33 93.9
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 8.5e-10 68.2 197 31.0
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 1.9e-09 67.0 58 60.3
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 3.2e-09 66.2 34 82.4
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 9.4e-09 64.7 33 81.8
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 4.0e-07 59.3 33 78.8
arahy.Tifrunner.gnm1.ann1.Q5958J Arachis hypogaea HOM05D003576 ORTHO05D004124 5.2e-07 58.9 51 62.7


User provided reference genes

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