Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02783_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 0.0e+00 1243.8 620 100.0
TPR.G14357 Trifolium pratense HOM05D005460 ORTHO05D008059 1.1e-291 1006.1 619 82.7
Psat1g126760 Pisum sativum HOM05D005460 ORTHO05D008059 2.2e-282 975.3 620 80.6
Medtr2g461560 Medicago truncatula HOM05D005460 ORTHO05D008059 9.8e-267 923.3 618 77.3
Lj1g0006842 Lotus japonicus HOM05D005460 ORTHO05D008059 2.6e-251 872.1 627 73.2
Glyma.06G206000 Glycine max HOM05D005460 ORTHO05D008059 2.1e-240 835.9 626 69.5
Phvul.009G203700 Phaseolus vulgaris HOM05D005460 ORTHO05D008059 2.3e-239 832.4 626 69.2
VMungo1309G0936 Vigna mungo HOM05D005460 ORTHO05D008059 4.9e-234 814.7 622 68.2
arahy.Tifrunner.gnm1.ann1.LBS82T Arachis hypogaea HOM05D005460 ORTHO05D008059 5.4e-225 784.6 641 65.5
arahy.Tifrunner.gnm1.ann1.N0CKJ9 Arachis hypogaea HOM05D005460 ORTHO05D008059 5.4e-225 784.6 643 65.3
QL10p020708 Quercus lobata HOM05D005460 ORTHO05D008059 5.0e-186 655.2 653 54.7
Cfa017734 Carpinus fangiana HOM05D005460 ORTHO05D008059 3.9e-183 645.6 647 53.8
Haze_18509 Corylus avellana HOM05D005460 ORTHO05D008059 3.1e-180 636.0 641 54.4
MD14G1216300 Malus domestica HOM05D005460 ORTHO05D008059 8.5e-162 574.7 646 48.9
Prupe.5G209800 Prunus persica HOM05D005460 ORTHO05D008059 1.1e-161 574.3 650 50.8
Ciclev10018555m.g Citrus clementina HOM05D005460 ORTHO05D008059 1.1e-156 557.8 638 49.1
Lalb_Chr11g0071861 Lupinus albus HOM05D005460 ORTHO05D008059 9.1e-156 554.7 386 73.1
TAR629G3051 Trochodendron aralioides HOM05D005460 ORTHO05D008059 1.0e-154 551.2 627 48.6
Thecc.03G107700 Theobroma cacao HOM05D005460 ORTHO05D008059 3.8e-154 549.3 625 48.6
Duzib068G0250 Durio zibethinus HOM05D005460 ORTHO05D008059 8.5e-154 548.1 619 49.3
Dinv07972 Davidia involucrata HOM05D005460 ORTHO05D008059 1.2e-152 544.3 613 49.9
Gohir.D11G037400 Gossypium hirsutum HOM05D005460 ORTHO05D008059 1.6e-152 543.9 627 48.6
Nn3g17530 Nelumbo nucifera HOM05D005460 ORTHO05D008059 2.7e-152 543.1 619 48.5
FvH4_5g13410 Fragaria vesca HOM05D005460 ORTHO05D008059 6.1e-152 542.0 642 48.6
FAN08G0483 Fragaria x ananassa HOM05D005460 ORTHO05D008059 2.6e-150 536.6 642 48.4
Gohir.A11G034000 Gossypium hirsutum HOM05D005460 ORTHO05D008059 1.7e-149 533.9 635 47.2
FAN13G3146 Fragaria x ananassa HOM05D005460 ORTHO05D008059 5.4e-148 528.9 646 48.5
Lsat_1_v5_gn_4_113721 Lactuca sativa HOM05D005460 ORTHO05D008059 2.0e-147 526.9 620 48.4
Cpa.g.sc3.237 Carica papaya HOM05D005460 ORTHO05D008059 2.7e-147 526.6 653 44.9
MELO3C017248.2 Cucumis melo HOM05D005460 ORTHO05D008059 5.0e-146 522.3 627 48.6
FAN18G2313 Fragaria x ananassa HOM05D005460 ORTHO05D008059 1.9e-145 520.4 677 46.2
Sed0020336 Sechium edule HOM05D005460 ORTHO05D008059 2.5e-145 520.0 640 48.0
Potri.012G063500 Populus trichocarpa HOM05D005460 ORTHO05D008059 5.6e-145 518.8 616 48.9
Actinidia04798 Actinidia chinensis HOM05D005460 ORTHO05D008059 7.3e-145 518.5 620 46.9
TWI60G0358 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 2.1e-144 516.9 627 47.4
TWI60G1488 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 2.1e-144 516.9 627 47.4
CsaV3_1G003350 Cucumis sativus L. HOM05D005460 ORTHO05D008059 3.6e-144 516.2 625 48.5
THA.LOC104818356 Tarenaya hassleriana HOM05D005460 ORTHO05D008059 3.0e-143 513.1 612 46.2
ClCG06G015450 Citrullus lanatus HOM05D005460 ORTHO05D008059 3.4e-142 509.6 624 47.1
HanXRQChr09g0270461 Helianthus annuus HOM05D005460 ORTHO05D008059 4.4e-142 509.2 615 48.3
MSTRG.22948 Avicennia marina HOM05D005460 ORTHO05D008059 1.3e-141 507.7 629 43.7
Migut.I00363 Erythranthe guttata HOM05D005460 ORTHO05D008059 4.9e-141 505.8 620 46.0
Cc04_g08300 Coffea canephora HOM05D005460 ORTHO05D008059 6.4e-141 505.4 615 48.0
Solyc03g114780.3 Solanum lycopersicum HOM05D005460 ORTHO05D008059 4.1e-140 502.7 634 46.8
Sopen03g033860 Solanum pennellii HOM05D005460 ORTHO05D008059 1.6e-139 500.7 637 46.2
COL.COLO4_27492 Corchorus olitorius HOM05D005460 ORTHO05D008059 2.7e-139 500.0 622 46.0
MBI16_g07042_MAGBIO Magnolia biondii HOM05D005460 ORTHO05D008059 1.0e-138 498.0 690 42.8
PGR031G2062 Punica granatum HOM05D005460 ORTHO05D008059 2.3e-138 496.9 648 44.4
Manes.06G081200 Manihot esculenta HOM05D005460 ORTHO05D008059 3.0e-138 496.5 489 52.8
SGA_v2.0_scaffold25G10948 Striga asiatica HOM05D005460 ORTHO05D008059 3.0e-138 496.5 619 45.9
Eucgr.K02548 Eucalyptus grandis HOM05D005460 ORTHO05D008059 5.0e-138 495.7 622 45.5
Gorai.007G040200 Gossypium raimondii HOM05D005460 ORTHO05D008059 3.3e-137 493.0 626 45.8
Aqoxy3G00547_Aqoxy3G00548 Aquilegia oxysepala HOM05D005460 ORTHO05D008059 9.5e-137 491.5 624 44.9
CiPaw.15G113700 Carya illinoinensis HOM05D005460 ORTHO05D008059 9.5e-137 491.5 437 59.0
ECA232G2972 Erigeron canadensis HOM05D005460 ORTHO05D008059 2.8e-136 490.0 608 46.5
Peaxi162Scf00017g03272 Petunia axillaris HOM05D005460 ORTHO05D008059 1.8e-135 487.3 604 46.2
PSO478G1652 Papaver somniferum HOM05D005460 ORTHO05D008059 1.2e-134 484.6 625 46.9
Sc04g0003880 Simmondsia chinensis HOM05D005460 ORTHO05D008059 2.6e-134 483.4 620 46.3
Hund09954 Selenicereus undatus HOM05D005460 ORTHO05D008059 4.4e-134 482.6 632 43.8
Aa31LG3G18430 Aethionema arabicum HOM05D005460 ORTHO05D008059 3.5e-131 473.0 605 44.5
Psat7g070520 Pisum sativum HOM05D005460 ORTHO05D008059 1.9e-129 467.2 481 56.8
C09p68840 Brassica napus HOM05D005460 ORTHO05D008059 2.5e-129 466.8 619 43.1
BcaB08g37287 Brassica carinata HOM05D005460 ORTHO05D008059 4.3e-129 466.1 624 44.1
GSVIVG01008151001 Vitis vinifera HOM05D005460 ORTHO05D008059 4.3e-129 466.1 618 44.7
A10p28560 Brassica napus HOM05D005460 ORTHO05D008059 4.7e-128 462.6 618 42.7
BolC9t59631H Brassica oleracea HOM05D005460 ORTHO05D008059 5.2e-127 459.1 623 42.5
Thhalv10012480m.g Eutrema salsugineum HOM05D005460 ORTHO05D008059 6.8e-127 458.8 619 42.6
BraA10t44905Z Brassica rapa HOM05D005460 ORTHO05D008059 2.0e-126 457.2 622 42.3
AL6G18480 Arabidopsis lyrata HOM05D005460 ORTHO05D008059 7.5e-126 455.3 603 42.8
CSS0025897 Camellia sinensis var. sinensis HOM05D005460 ORTHO05D008059 4.9e-125 452.6 617 43.6
Carub.0006s0699 Capsella rubella HOM05D005460 ORTHO05D008059 3.6e-120 436.4 622 41.5
AUR62039669 Chenopodium quinoa HOM05D005460 ORTHO05D008059 8.1e-120 435.3 682 40.5
AT5G08110 Arabidopsis thaliana HOM05D005460 ORTHO05D008059 1.8e-119 434.1 604 42.1
Rhsim08G0141800 Rhododendron simsii HOM05D005460 ORTHO05D008059 2.6e-118 430.3 686 41.1
ATR0827G052 Amborella trichopoda HOM05D005460 ORTHO05D008059 6.4e-117 425.6 679 41.2
EL10Ac5g11188 Beta vulgaris HOM05D005460 ORTHO05D008059 6.4e-117 425.6 680 40.1
Nitab4.5_0005994g0060 Nicotiana tabacum HOM05D005460 ORTHO05D008059 4.6e-115 419.5 607 42.5
HPP92_007735 Vanilla planifolia HOM05D005460 ORTHO05D008059 5.1e-114 416.0 633 41.2
RcHm_v2.0_Chr7g0183711 Rosa chinensis HOM05D005460 ORTHO05D008059 8.9e-111 405.2 404 54.5
Ah.11g047430 Amaranthus hybridus HOM05D005460 ORTHO05D008059 8.4e-101 372.1 374 55.3
Lj9A438G54 Lonicera japonica HOM05D005460 ORTHO05D008059 7.9e-99 365.5 257 68.5
Sp6g34850 Schrenkiella parvula HOM05D005460 ORTHO05D008059 3.9e-98 363.2 327 56.9
CANSAT80G0202 Cannabis sativa HOM05D005460 ORTHO05D008059 2.1e-96 357.5 280 63.9
Nitab4.5_0002467g0140 Nicotiana tabacum HOM05D005460 ORTHO05D008059 3.6e-96 356.7 280 64.6
Oeu005512.2 Olea europaea HOM05D005460 ORTHO05D008059 1.7e-93 347.8 246 69.1
SHI17427 Sapria himalayana HOM05D005460 ORTHO05D008059 3.8e-93 346.7 237 70.9
Hma1.2p1_2037F.1_g311980 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 4.9e-93 346.3 281 63.7
Prupe.5G209300 Prunus persica HOM05D005460 ORTHO05D008059 3.5e-91 340.1 273 64.8
vmacro17637 Vaccinium macrocarpon HOM05D005460 ORTHO05D008059 2.5e-89 334.0 376 51.1
AUR62032136 Chenopodium quinoa HOM05D005460 ORTHO05D008059 7.4e-89 332.4 624 37.3
Zm00001eb327130 Zea mays HOM05D005460 ORTHO05D008059 9.6e-89 332.0 241 63.5
Os02g0111900 Oryza sativa ssp. japonica HOM05D005460 ORTHO05D008059 1.1e-81 308.5 243 58.4
AagrBONN_evm.TU.Sc2ySwM_344.3544 Anthoceros agrestis HOM05D005460 ORTHO05D008059 3.7e-80 303.5 455 40.0
Pp3c5_22230 Physcomitrium patens HOM05D005460 ORTHO05D008059 1.3e-77 295.0 460 39.1
CBR_g50975 Chara braunii HOM05D005460 ORTHO05D008059 3.8e-69 266.9 240 52.5
Pp3c7_15450 Physcomitrium patens HOM05D005460 ORTHO05D008059 2.9e-53 214.2 292 41.4
Pp3c7_15456 Physcomitrium patens HOM05D005460 ORTHO05D008059 2.9e-53 214.2 292 41.4
MCO09G659 Micromonas commoda HOM05D005460 ORTHO05D008059 3.2e-52 210.7 269 43.1
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 1.7e-48 198.4 466 30.7
AagrBONN_evm.TU.Sc2ySwM_344.4214 Anthoceros agrestis HOM05D005460 ORTHO05D008059 2.8e-48 197.6 237 43.9
SEGI_12628 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 2.4e-47 194.5 125 68.0
Pp3s405_10 Physcomitrium patens HOM05D005460 ORTHO05D008059 3.5e-46 190.7 228 41.7
SMO203G0199 Selaginella moellendorffii HOM05D005460 ORTHO05D008059 2.7e-43 181.0 407 31.9
Cre03.g187700 Chlamydomonas reinhardtii HOM05D005460 ORTHO05D008059 4.7e-43 180.3 187 48.7
SEGI_17125 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 2.3e-42 177.9 154 58.4
Os07g0606500 Oryza sativa ssp. japonica HOM05D005460 ORTHO05D008059 2.0e-41 174.9 107 72.0
PRCOL_00000536 Prasinoderma coloniale HOM05D005460 ORTHO05D008059 2.6e-41 174.5 288 38.2
SEGI_40089 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 2.8e-35 154.5 166 51.8
QL01p024738 Quercus lobata HOM05D005460 ORTHO05D008059 9.8e-33 146.0 103 72.8
MCO07G109 Micromonas commoda HOM05D005460 ORTHO05D008059 8.3e-32 142.9 251 37.1
vmacro17638 Vaccinium macrocarpon HOM05D005460 ORTHO05D018279 2.7e-30 137.9 230 38.3
DCAR_011574 Daucus carota HOM05D005460 ORTHO05D008059 7.3e-28 129.8 91 64.8
SHI17426 Sapria himalayana HOM05D005460 ORTHO05D018279 3.9e-21 107.5 239 29.7
CARHR205080 Cardamine hirsuta HOM05D005460 ORTHO05D008059 1.0e-18 99.4 70 68.6
RcHm_v2.0_Chr7g0183721 Rosa chinensis HOM05D005460 ORTHO05D018279 8.9e-18 96.3 175 38.3
Cfa022214 Carpinus fangiana HOM05D005460 ORTHO05D124255 1.5e-17 95.5 88 50.0
Ah.11g047420 Amaranthus hybridus HOM05D005460 ORTHO05D018279 4.6e-14 84.0 191 29.3
Hma1.2p1_2037F.1_g311970 Hydrangea macrophylla HOM05D005460 ORTHO05D018279 1.0e-13 82.8 293 25.6
Potri.012G063000 Populus trichocarpa HOM05D005460 ORTHO05D018279 1.4e-10 72.4 70 47.1
Lsat_1_v5_gn_2_72741 Lactuca sativa HOM05D005460 ORTHO05D000550 1.2e-09 69.3 198 31.3
Lsat_1_v5_gn_2_72781 Lactuca sativa HOM05D005460 ORTHO05D000550 3.4e-09 67.8 179 34.1
COL.COLO4_15612 Corchorus olitorius HOM05D067717 ORTHO05D044775 5.4e-07 60.5 180 28.9
THA.LOC104820413 Tarenaya hassleriana HOM05D000032 ORTHO05D003522 5.4e-07 60.5 154 33.1
Aa31LG8G5460 Aethionema arabicum HOM05D000032 ORTHO05D003522 3.5e-06 57.8 154 32.5
AL3G31910 Arabidopsis lyrata HOM05D000032 ORTHO05D003522 3.5e-06 57.8 154 31.8
CsaV3_1G006410 Cucumis sativus L. HOM05D000032 ORTHO05D003522 6.0e-06 57.0 154 29.9
ClCG05G006710 Citrullus lanatus HOM05D000924 ORTHO05D001209 7.8e-06 56.6 158 26.6
PGR083G1659 Punica granatum HOM05D000924 ORTHO05D001209 7.8e-06 56.6 156 24.4


User provided reference genes

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