Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 1.8e-277 958.7 518 100.0
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 5.8e-180 634.8 669 55.5
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 3.2e-178 629.0 648 59.1
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 5.6e-159 565.1 600 54.2
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 1.2e-156 557.4 598 53.8
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 1.8e-149 533.5 640 50.3
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 2.1e-137 493.4 607 48.6
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 4.8e-134 482.3 637 49.5
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 6.3e-134 481.9 613 48.6
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 5.2e-128 462.2 613 48.6
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 3.5e-116 422.9 606 44.6
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 1.5e-90 337.8 633 38.2
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 7.8e-84 315.5 602 36.2
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 2.8e-81 307.0 585 36.6
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 8.9e-80 302.0 609 36.3
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 3.7e-78 296.6 764 31.3
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 2.4e-77 293.9 566 35.7
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 4.6e-76 289.7 566 35.5
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 5.1e-75 286.2 579 37.3
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 1.1e-74 285.0 615 35.6
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 4.3e-74 283.1 574 35.2
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 2.8e-73 280.4 579 36.8
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 5.2e-72 276.2 627 34.1
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 1.6e-68 264.6 612 34.5
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 3.5e-68 263.5 583 32.4
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 1.3e-67 261.5 653 30.8
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 2.3e-67 260.8 580 35.3
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 2.3e-67 260.8 290 53.4
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 1.1e-66 258.5 671 29.8
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 1.1e-66 258.5 671 29.7
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 4.3e-66 256.5 558 34.9
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 4.3e-66 256.5 671 29.8
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 7.3e-66 255.8 679 29.7
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 2.8e-65 253.8 747 29.6
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 8.1e-65 252.3 700 29.3
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 4.0e-64 250.0 425 37.9
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 4.0e-64 250.0 778 29.7
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 1.5e-63 248.1 680 31.3
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 5.8e-63 246.1 652 30.8
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 4.9e-62 243.0 639 30.7
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 2.4e-61 240.7 662 31.0
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 3.2e-61 240.4 544 34.4
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 3.2e-61 240.4 644 29.8
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 4.2e-61 240.0 665 34.0
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 5.4e-61 239.6 708 30.6
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 9.3e-61 238.8 551 34.1
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 3.5e-60 236.9 616 29.2
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 4.6e-60 236.5 772 29.5
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 1.0e-59 235.3 677 30.1
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 6.6e-59 232.6 687 29.7
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 8.7e-59 232.3 693 28.0
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 8.7e-59 232.3 581 32.0
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 8.7e-59 232.3 442 34.4
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 1.5e-58 231.5 442 36.7
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 1.3e-57 228.4 535 32.5
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.6e-57 228.0 647 30.4
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 1.6e-57 228.0 441 33.3
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 2.1e-57 227.6 652 29.8
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 3.6e-57 226.9 665 28.7
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 3.6e-57 226.9 666 28.7
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 1.1e-56 225.3 617 31.8
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 4.0e-56 223.4 580 31.7
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 1.5e-55 221.5 701 28.1
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 2.0e-55 221.1 653 27.6
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.0e-55 221.1 660 29.8
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 2.0e-55 221.1 491 33.4
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 4.5e-55 219.9 406 36.0
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 7.6e-55 219.2 661 28.3
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 9.9e-55 218.8 289 40.8
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 2.2e-54 217.6 647 30.0
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.9e-53 214.5 741 25.9
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 2.4e-53 214.2 287 39.4
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 2.7e-52 210.7 656 30.3
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 6.0e-52 209.5 458 34.5
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 1.0e-51 208.8 428 35.3
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 1.3e-51 208.4 288 39.9
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 2.3e-51 207.6 418 35.9
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 3.0e-51 207.2 670 28.8
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 1.1e-50 205.3 652 28.7
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 2.5e-50 204.1 717 28.0
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 9.6e-50 202.2 448 33.0
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 9.6e-50 202.2 403 35.7
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 3.7e-49 200.3 532 31.2
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 3.1e-48 197.2 708 28.1
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 4.0e-48 196.8 287 40.4
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 5.3e-48 196.4 422 34.4
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 5.3e-48 196.4 410 35.6
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 6.9e-48 196.1 438 33.6
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 6.9e-48 196.1 409 35.7
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 1.2e-47 195.3 320 40.3
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 9.9e-47 192.2 433 33.7
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 1.7e-46 191.4 438 32.9
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 1.1e-45 188.7 416 34.1
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 2.7e-44 184.1 554 34.7
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 7.9e-44 182.6 422 36.5
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 7.4e-42 176.0 429 31.9
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 1.8e-40 171.4 627 28.7
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 2.4e-40 171.0 468 28.2
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 5.3e-40 169.9 593 28.0
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 3.2e-37 160.6 211 45.5
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 7.1e-37 159.5 150 48.7
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 1.1e-32 145.6 233 34.8
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 5.0e-30 136.7 132 53.8
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 6.1e-28 129.8 304 35.9
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 6.1e-28 129.8 75 80.0
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 1.5e-26 125.2 87 67.8
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 7.4e-26 122.9 91 62.6
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 2.2e-22 111.3 165 43.0
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 6.5e-22 109.8 191 37.7
TPR.G24042 Trifolium pratense HOM05D006136 ORTHO05D007244 1.1e-21 109.0 73 72.6
FvH4_4g00130 Fragaria vesca HOM05D006136 ORTHO05D007244 2.1e-20 104.8 174 40.2
VMungo1309G2339 Vigna mungo HOM05D006136 ORTHO05D007244 3.6e-20 104.0 158 41.8
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 7.4e-18 96.3 256 27.3
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 1.1e-16 92.4 61 82.0
Nitab4.5_0002310g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 4.5e-15 87.0 170 35.3
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 1.3e-14 85.5 215 32.6
Solyc07g042700.4 Solanum lycopersicum HOM05D006136 ORTHO05D007244 5.0e-14 83.6 156 35.9
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 2.7e-12 77.8 125 37.6
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 1.8e-11 75.1 46 78.3
Psat1g163240 Pisum sativum HOM05D007111 ORTHO05D008698 1.8e-11 75.1 46 78.3
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 6.7e-11 73.2 135 34.1
Lsat_1_v5_gn_5_81880 Lactuca sativa HOM05D006136 ORTHO05D007244 1.2e-07 62.4 183 29.0
Hund03317 Selenicereus undatus HOM05D006136 ORTHO05D007244 7.7e-07 59.7 477 24.3
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 8.5e-06 56.2 47 61.7
MBI16_g40728_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 8.5e-06 56.2 75 42.7


User provided reference genes

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