Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 1.6e-223 779.2 442 100.0
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 1.4e-195 686.4 428 90.2
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 5.4e-195 684.5 428 89.7
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 1.4e-179 633.3 426 82.4
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 6.0e-178 627.9 426 82.2
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 2.4e-174 615.9 397 82.6
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 4.5e-173 611.7 397 81.6
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 7.4e-168 594.3 428 77.3
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 3.6e-162 575.5 430 73.7
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 1.7e-156 556.6 472 67.4
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 3.3e-152 542.3 398 73.1
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 1.3e-151 540.4 398 73.6
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 6.5e-148 528.1 398 71.6
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 5.5e-147 525.0 429 69.5
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 7.2e-147 524.6 405 72.8
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 7.2e-147 524.6 399 73.4
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 2.7e-146 522.7 397 71.5
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 4.0e-145 518.8 399 70.4
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 4.0e-145 518.8 398 70.4
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 2.6e-144 516.2 399 72.9
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 4.4e-144 515.4 397 71.5
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 7.5e-144 514.6 398 70.4
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 7.5e-144 514.6 398 70.6
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 3.7e-143 512.3 404 71.8
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 1.8e-142 510.0 436 65.4
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 2.4e-142 509.6 397 71.0
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 1.2e-141 507.3 436 67.9
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 1.2e-141 507.3 530 53.6
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 3.5e-141 505.8 397 68.0
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 5.9e-141 505.0 398 69.8
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 1.7e-140 503.4 399 67.7
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 1.5e-139 500.4 436 66.3
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 1.9e-139 500.0 398 68.8
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 1.9e-139 500.0 398 69.1
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 1.9e-139 500.0 400 69.2
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 4.2e-139 498.8 400 68.0
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 1.6e-138 496.9 398 69.3
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 2.7e-138 496.1 403 68.7
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 3.6e-138 495.7 399 68.4
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 6.1e-138 495.0 398 68.8
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 6.1e-138 495.0 399 67.7
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 1.8e-137 493.4 398 68.6
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 2.3e-137 493.0 418 64.6
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 5.2e-137 491.9 398 68.1
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 6.8e-137 491.5 398 67.6
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.2e-136 490.7 398 67.8
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 1.5e-136 490.3 399 68.2
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 5.7e-136 488.4 398 67.3
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 2.8e-135 486.1 429 65.0
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 2.8e-135 486.1 398 67.3
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 2.8e-135 486.1 399 68.4
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 3.7e-135 485.7 383 71.3
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 3.7e-135 485.7 402 68.4
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 4.8e-135 485.3 398 67.6
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 4.8e-135 485.3 400 67.5
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 4.8e-135 485.3 397 68.0
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 4.8e-135 485.3 396 67.7
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 8.3e-135 484.6 400 65.2
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 1.1e-134 484.2 398 67.3
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 1.4e-134 483.8 398 67.6
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 1.4e-134 483.8 400 67.8
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 1.8e-134 483.4 400 67.2
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 1.8e-134 483.4 401 68.3
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 1.8e-134 483.4 396 68.2
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 1.8e-134 483.4 396 67.9
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 5.4e-134 481.9 400 67.0
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 9.1e-134 481.1 407 60.4
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 1.2e-133 480.7 400 67.0
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 5.9e-133 478.4 400 66.8
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 5.0e-132 475.3 380 70.3
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 1.2e-130 470.7 399 65.7
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 1.6e-130 470.3 397 66.5
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 2.8e-130 469.5 442 61.3
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 3.0e-129 466.1 428 63.6
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 3.4e-128 462.6 412 64.1
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 2.4e-126 456.4 430 64.4
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.2e-125 454.1 405 58.3
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 1.6e-125 453.8 398 65.1
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 1.5e-123 447.2 424 62.0
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 2.5e-123 446.4 400 63.8
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 1.4e-121 440.7 375 65.6
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 2.6e-120 436.4 395 60.3
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 2.2e-119 433.3 408 57.8
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 2.2e-119 433.3 382 63.9
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 4.9e-119 432.2 398 54.5
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 1.1e-118 431.0 391 60.9
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 3.2e-118 429.5 374 66.3
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 1.2e-117 427.6 391 55.2
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 2.0e-117 426.8 385 61.8
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 6.0e-117 425.2 383 61.1
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 1.3e-116 424.1 395 63.0
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.9e-115 420.2 400 53.0
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 2.5e-115 419.9 395 62.5
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 5.6e-115 418.7 399 61.7
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 4.7e-114 415.6 384 60.2
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 8.0e-114 414.8 386 61.4
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 1.8e-113 413.7 384 61.2
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 2.3e-113 413.3 395 61.3
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 3.1e-113 412.9 384 60.9
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 3.1e-113 412.9 384 61.2
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 3.1e-113 412.9 384 61.2
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 2.2e-111 406.8 387 59.7
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 3.7e-111 406.0 398 59.0
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 3.7e-111 406.0 384 59.1
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 6.4e-111 405.2 386 59.6
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 6.4e-111 405.2 386 59.6
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 8.3e-111 404.8 399 52.1
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 1.3e-108 397.5 408 54.7
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.9e-107 393.7 419 51.3
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 2.5e-107 393.3 429 58.3
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 9.5e-107 391.3 454 49.3
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 1.6e-106 390.6 262 74.0
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 2.3e-105 386.7 403 57.3
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 9.6e-99 364.8 385 53.5
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 8.9e-97 358.2 419 53.2
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 1.3e-95 354.4 414 54.1
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 1.5e-88 330.9 355 58.9
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 1.5e-83 314.3 467 45.2
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 2.0e-80 303.9 365 51.8
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 3.9e-68 263.1 189 68.3
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 9.3e-62 241.9 423 34.5
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 6.5e-55 219.2 424 38.0
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 9.4e-54 215.3 161 66.5
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 4.8e-50 203.0 279 41.9
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 1.1e-46 191.8 402 33.1
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 1.4e-41 174.9 253 40.3
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 1.2e-40 171.8 205 43.9
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 4.5e-24 116.7 478 24.7
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 2.1e-21 107.8 132 43.2
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 7.5e-19 99.4 101 49.5
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 3.7e-18 97.1 92 50.0
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 6.3e-18 96.3 83 53.0
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 2.3e-15 87.8 166 36.1
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 3.6e-13 80.5 166 33.1
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 2.9e-10 70.9 132 33.3
CSS0041467 Camellia sinensis var. sinensis HOM05D000464 ORTHO05D000408 4.6e-08 63.5 233 30.0
Nitab4.5_0002059g0020 Nicotiana tabacum HOM05D000453 ORTHO05D000387 1.5e-06 58.5 118 33.9
HanXRQChr04g0115571 Helianthus annuus HOM05D004758 ORTHO05D006063 5.6e-06 56.6 116 32.8
Haze_27084 Corylus avellana HOM05D002303 ORTHO05D007639 7.3e-06 56.2 223 21.5
Cpa.g.sc77.59 Carica papaya HOM05D002332 ORTHO05D002509 9.5e-06 55.8 79 38.0
SalBow3G0209 Salvia bowleyana HOM05D000645 ORTHO05D000494 9.5e-06 55.8 198 23.2


User provided reference genes

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