Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1924.8 962 100.0
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1924.8 962 100.0
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1728.4 963 89.5
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1722.2 962 89.4
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1686.4 963 87.0
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1642.1 963 84.6
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1641.3 964 85.6
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1640.6 965 84.5
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1639.4 963 84.4
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1639.4 963 84.4
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1631.3 962 83.4
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1630.5 963 83.9
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1630.2 962 83.9
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1629.4 950 85.1
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1624.8 962 83.8
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1624.0 964 84.3
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1623.2 952 85.0
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1621.3 952 84.8
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1618.2 942 84.5
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1616.7 951 83.7
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1615.9 963 84.0
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1614.4 963 83.7
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1612.0 962 83.6
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1607.4 948 84.4
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1606.7 963 83.3
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1606.3 954 83.5
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1605.9 962 82.4
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1605.5 962 83.4
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1603.2 948 84.2
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1602.0 948 84.1
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1602.0 963 82.0
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1600.9 960 82.7
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1600.5 963 82.6
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1593.6 948 83.9
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1589.7 974 81.7
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1588.2 948 83.4
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1587.8 948 83.2
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1587.4 962 82.0
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1586.6 942 84.1
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1584.7 955 82.5
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1584.3 963 81.8
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1580.1 959 81.4
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1577.0 962 80.8
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1575.5 972 80.8
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1574.7 963 81.3
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1574.3 965 80.6
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1573.1 957 80.6
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1572.0 968 81.1
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1570.8 963 81.2
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1570.8 972 81.0
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1568.1 973 81.8
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1564.7 949 82.4
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1564.7 962 80.6
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1563.1 973 80.3
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1562.7 962 80.0
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1562.4 971 80.7
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1560.8 977 80.6
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1559.3 971 81.1
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1557.7 971 80.8
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1556.6 962 79.6
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1555.8 962 79.7
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1555.0 951 81.8
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1552.7 962 79.2
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1551.6 971 79.8
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1549.6 962 78.6
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1548.9 963 80.2
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1548.1 1002 78.2
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1548.1 975 79.7
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1548.1 962 78.6
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1546.6 964 80.7
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1543.9 959 80.4
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1541.2 959 80.7
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1536.9 964 80.5
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1536.2 952 79.6
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1535.8 962 79.4
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1526.1 964 79.5
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1516.1 942 79.8
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1516.1 942 79.8
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1514.2 961 78.9
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1511.9 963 78.9
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1510.7 942 79.1
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1510.4 963 78.8
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1510.4 952 78.9
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1509.6 947 79.2
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1508.4 942 79.3
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1508.0 965 78.4
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1506.1 942 79.2
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1506.1 942 79.2
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1506.1 942 78.9
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1506.1 970 79.0
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1501.1 966 77.8
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1500.7 942 78.6
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1500.0 947 78.6
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1498.4 982 76.8
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1494.2 942 78.5
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1493.4 964 78.2
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1490.3 949 78.3
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1489.2 947 78.7
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1477.6 955 76.8
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1462.6 959 76.0
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1454.5 943 77.3
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1428.3 833 85.2
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1419.1 965 71.9
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1416.7 943 72.9
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1379.4 948 72.8
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1352.8 964 70.0
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1345.9 856 78.5
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1335.9 950 72.8
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1333.9 848 79.0
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1236.5 737 83.0
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1223.0 962 66.2
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1192.6 957 61.8
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1181.4 1004 59.7
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1163.7 704 82.5
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1133.2 670 83.4
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1116.3 643 85.2
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1102.8 1022 55.3
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1097.8 944 59.6
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 9.8e-282 973.8 722 67.3
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 1.0e-222 777.7 772 52.3
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 6.2e-220 768.5 464 81.5
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 7.7e-186 655.2 447 72.0
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.1e-131 475.3 303 74.9
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 1.0e-113 415.6 1316 25.4
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 3.8e-108 397.1 639 37.9
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 2.0e-80 305.1 201 73.1
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.0e-72 278.5 208 72.6
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.3e-60 239.2 184 69.0
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 7.7e-53 213.4 300 43.7
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 3.6e-50 204.5 125 80.0
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 3.9e-44 184.5 134 69.4
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.4e-38 165.2 201 45.3
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 1.6e-37 162.5 139 60.4
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 7.8e-29 133.7 64 95.3
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 3.4e-16 91.7 80 61.2
Actinidia07884 Actinidia chinensis HOM05D005707 ORTHO05D057301 5.3e-09 67.8 102 46.1
MD09G1123100 Malus domestica HOM05D005707 ORTHO05D048631 4.4e-08 64.7 45 71.1
Dinv05834 Davidia involucrata HOM05D005707 ORTHO05D181672 2.4e-06 58.9 146 36.3


User provided reference genes

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