Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 5.8e-76 287.7 173 100.0
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 3.5e-65 251.9 167 91.0
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 6.7e-64 247.7 161 93.2
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 3.3e-63 245.4 161 93.2
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 7.4e-63 244.2 160 93.1
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 1.6e-62 243.0 160 89.4
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 1.1e-61 240.4 161 89.4
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.4e-61 240.0 161 90.7
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.4e-61 240.0 161 90.7
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 1.4e-61 240.0 161 90.7
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 1.4e-61 240.0 161 89.4
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 1.8e-61 239.6 161 88.8
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 1.8e-61 239.6 160 90.0
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 3.1e-61 238.8 161 90.7
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 4.0e-61 238.4 161 90.1
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 5.3e-61 238.0 168 86.3
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 6.9e-61 237.7 160 90.6
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 6.9e-61 237.7 160 90.6
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 6.9e-61 237.7 160 90.6
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 6.9e-61 237.7 159 89.3
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 9.0e-61 237.3 168 86.3
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 1.2e-60 236.9 161 90.1
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 1.5e-60 236.5 161 89.4
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 1.5e-60 236.5 168 85.7
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 1.5e-60 236.5 161 88.2
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 2.0e-60 236.1 161 87.6
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.0e-60 236.1 161 90.1
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 2.6e-60 235.7 160 84.4
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 2.6e-60 235.7 160 87.5
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 2.6e-60 235.7 168 86.3
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.6e-60 235.7 161 90.1
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 2.6e-60 235.7 161 87.6
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 3.4e-60 235.3 161 86.3
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 3.4e-60 235.3 161 88.8
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 5.8e-60 234.6 159 89.3
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 5.8e-60 234.6 161 89.4
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 7.6e-60 234.2 160 87.5
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 1.0e-59 233.8 160 86.9
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 1.3e-59 233.4 160 86.9
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 1.3e-59 233.4 160 86.9
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 1.3e-59 233.4 162 88.9
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.3e-59 233.4 160 89.4
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.2e-59 232.6 166 88.0
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 2.2e-59 232.6 161 88.2
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 2.9e-59 232.3 169 85.8
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 2.9e-59 232.3 161 88.2
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 4.9e-59 231.5 159 79.2
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 4.9e-59 231.5 160 88.1
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 4.9e-59 231.5 161 84.5
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 6.5e-59 231.1 158 87.3
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 8.4e-59 230.7 161 88.2
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.1e-58 230.3 169 84.6
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 1.4e-58 229.9 159 88.7
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 1.4e-58 229.9 162 89.5
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 1.4e-58 229.9 158 89.9
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 1.4e-58 229.9 160 88.8
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.9e-58 229.6 164 89.6
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 1.9e-58 229.6 166 82.5
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 1.9e-58 229.6 162 85.8
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.9e-58 229.6 161 89.4
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 2.5e-58 229.2 164 89.0
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 2.5e-58 229.2 161 85.7
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 2.5e-58 229.2 161 85.7
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 3.2e-58 228.8 160 85.6
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 4.2e-58 228.4 167 83.2
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 4.2e-58 228.4 161 85.7
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 4.2e-58 228.4 160 83.1
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 4.2e-58 228.4 162 87.0
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 5.5e-58 228.0 169 80.5
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 9.3e-58 227.3 160 90.0
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 9.3e-58 227.3 160 90.0
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 2.1e-57 226.1 159 84.9
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 2.1e-57 226.1 159 87.4
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 2.1e-57 226.1 157 86.0
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 3.5e-57 225.3 163 85.9
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 3.5e-57 225.3 161 86.3
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 4.6e-57 224.9 159 83.6
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 4.6e-57 224.9 161 85.7
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 6.0e-57 224.6 166 85.5
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 1.0e-56 223.8 160 80.0
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 1.0e-56 223.8 161 87.6
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 1.0e-56 223.8 158 86.1
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 1.3e-56 223.4 158 84.2
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 1.3e-56 223.4 211 70.6
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 1.8e-56 223.0 160 81.2
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 2.3e-56 222.6 160 81.9
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 2.3e-56 222.6 160 81.2
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 5.1e-56 221.5 159 81.1
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 6.7e-56 221.1 162 84.6
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 1.5e-55 219.9 168 81.5
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 1.5e-55 219.9 159 79.9
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 1.5e-55 219.9 159 81.8
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 5.7e-55 218.0 159 79.9
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 5.7e-55 218.0 162 82.1
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 9.6e-55 217.2 160 86.9
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 1.6e-54 216.5 161 84.5
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 2.8e-54 215.7 163 78.5
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 3.7e-54 215.3 160 83.8
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 4.8e-54 214.9 153 82.4
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 5.3e-53 211.5 160 86.9
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 3.4e-52 208.8 155 80.0
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 4.5e-52 208.4 112 88.4
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.9e-51 205.7 120 84.2
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 6.5e-51 204.5 160 65.6
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.9e-50 203.0 161 78.9
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 4.2e-50 201.8 205 64.9
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 5.5e-50 201.4 103 92.2
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 3.0e-48 195.7 159 76.7
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.8e-46 189.1 113 78.8
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.2e-44 183.7 150 79.3
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 3.4e-44 182.2 109 78.0
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 4.5e-44 181.8 260 53.5
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.9e-43 179.1 159 76.1
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 6.5e-43 177.9 140 82.1
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.1e-42 177.2 96 86.5
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 6.1e-41 171.4 165 66.1
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 7.4e-39 164.5 160 65.6
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.8e-38 162.5 123 86.2
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 4.1e-37 158.7 180 67.8
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 7.7e-36 154.5 178 51.7
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.2e-35 152.9 107 76.6
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 5.5e-34 148.3 98 71.4
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.6e-33 145.6 170 70.0
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 6.3e-30 134.8 164 61.0
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 5.9e-28 128.3 181 44.2
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.9e-26 123.2 84 76.2
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 1.2e-25 120.6 162 43.8
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.5e-23 113.6 241 47.3
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 4.1e-21 105.5 89 60.7
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 9.4e-18 94.4 96 77.1
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 6.8e-16 88.2 91 78.0
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 1.2e-15 87.4 172 44.8
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 2.7e-12 76.3 161 37.9
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 2.2e-11 73.2 46 80.4
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 2.0e-07 60.1 117 30.8


User provided reference genes

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