Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046958 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D010012 2.7e-94 348.6 167 100.0
CSS0007492 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 5.8e-81 304.3 149 97.3
Actinidia38350 Actinidia chinensis HOM05D000399 ORTHO05D000304 8.2e-43 177.6 148 64.2
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 1.4e-42 176.8 148 67.6
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 3.1e-42 175.6 149 60.4
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 3.1e-42 175.6 149 60.4
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 6.9e-42 174.5 156 62.8
Hma1.2p1_0182F.1_g080650 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 7.4e-36 154.5 147 58.5
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 1.3e-35 153.7 149 55.0
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 2.9e-32 142.5 152 52.6
Haze_19295 Corylus avellana HOM05D000399 ORTHO05D000304 2.9e-32 142.5 158 53.2
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 8.5e-32 141.0 152 50.7
QL02p091746 Quercus lobata HOM05D000399 ORTHO05D010012 1.9e-31 139.8 152 50.0
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 6.1e-30 134.8 164 47.0
Peaxi162Scf00347g00328 Petunia axillaris HOM05D000399 ORTHO05D000304 6.1e-30 134.8 151 49.0
DCAR_019361 Daucus carota HOM05D000399 ORTHO05D000304 1.8e-29 133.3 178 45.5
DCAR_019363 Daucus carota HOM05D000399 ORTHO05D000304 1.8e-29 133.3 178 45.5
Nitab4.5_0004050g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 3.0e-29 132.5 153 47.1
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 5.1e-29 131.7 163 45.4
CAN.G520.37 Capsicum annuum HOM05D000399 ORTHO05D000304 8.8e-29 131.0 153 46.4
Duzib168G1954 Durio zibethinus HOM05D000399 ORTHO05D000304 2.6e-28 129.4 155 46.5
Thecc.09G036900 Theobroma cacao HOM05D000399 ORTHO05D000304 3.3e-28 129.0 159 43.4
Nitab4.5_0000416g0080 Nicotiana tabacum HOM05D000399 ORTHO05D000304 7.4e-28 127.9 147 48.3
Gohir.D05G051600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 9.7e-28 127.5 163 44.8
Solyc07g005030.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 9.7e-28 127.5 149 47.7
Sopen07g001140 Solanum pennellii HOM05D000399 ORTHO05D000304 1.7e-27 126.7 152 47.4
TAR626G0740 Trochodendron aralioides HOM05D007151 ORTHO05D009056 3.7e-27 125.6 151 49.7
Ciclev10007241m.g Citrus clementina HOM05D000399 ORTHO05D000304 4.8e-27 125.2 153 46.4
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 4.8e-27 125.2 146 48.6
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 1.1e-26 124.0 148 47.3
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 1.4e-26 123.6 150 46.0
FvH4_1g01480 Fragaria vesca HOM05D000399 ORTHO05D000304 1.8e-26 123.2 149 49.0
Manes.14G140128 Manihot esculenta HOM05D000399 ORTHO05D000304 1.8e-26 123.2 145 48.3
FAN19G1338 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.1e-26 122.5 149 48.3
Lj7C452G5 Lonicera japonica HOM05D000399 ORTHO05D000304 3.1e-26 122.5 149 44.3
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 6.9e-26 121.3 145 46.9
MD15G1157600 Malus domestica HOM05D000399 ORTHO05D000304 1.2e-25 120.6 150 47.3
FAN28G2728 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.4e-25 119.0 158 46.8
THA.LOC104811019 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 3.4e-25 119.0 152 44.1
PGR142G0104 Punica granatum HOM05D000399 ORTHO05D000304 7.7e-25 117.9 152 44.7
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.9e-24 115.9 149 47.0
RcHm_v2.0_Chr2g0086421 Rosa chinensis HOM05D000399 ORTHO05D000304 6.5e-24 114.8 149 46.3
Glyma.13G156500 Glycine max HOM05D000399 ORTHO05D000304 8.5e-24 114.4 153 43.8
Lsat_1_v5_gn_5_90720 Lactuca sativa HOM05D000399 ORTHO05D000304 1.1e-23 114.0 157 44.6
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 1.9e-23 113.2 148 41.9
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 4.2e-23 112.1 149 43.0
Ca_21605_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 5.5e-23 111.7 150 44.7
arahy.Tifrunner.gnm1.ann1.ZFL6Z0 Arachis hypogaea HOM05D000399 ORTHO05D000304 7.2e-23 111.3 149 44.3
Glyma.17G104100 Glycine max HOM05D000399 ORTHO05D000304 1.2e-22 110.5 148 42.6
Migut.K00362 Erythranthe guttata HOM05D000399 ORTHO05D000304 1.6e-22 110.2 159 44.7
SGA_v2.0_scaffold183G39849 Striga asiatica HOM05D000399 ORTHO05D000304 2.1e-22 109.8 164 46.3
Psat4g034160 Pisum sativum HOM05D000399 ORTHO05D000304 2.7e-22 109.4 146 42.5
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 3.6e-22 109.0 148 42.6
Potri.006G188800 Populus trichocarpa HOM05D000399 ORTHO05D000304 3.6e-22 109.0 145 47.6
Sabra06G0144400 Salix brachista HOM05D000399 ORTHO05D000304 2.3e-21 106.3 145 46.2
Cc06_g07320 Coffea canephora HOM05D000399 ORTHO05D000304 6.7e-21 104.8 146 43.2
DCAR_008820 Daucus carota HOM05D000399 ORTHO05D000304 8.8e-21 104.4 221 34.4
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 1.1e-20 104.0 161 39.8
PSO832G3766 Papaver somniferum HOM05D000399 ORTHO05D000304 1.5e-20 103.6 152 42.1
EL10Ac8g18834 Beta vulgaris HOM05D000399 ORTHO05D000304 3.3e-20 102.4 172 36.6
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 4.4e-20 102.1 169 42.6
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 5.7e-20 101.7 158 43.0
HanXRQChr12g0356941 Helianthus annuus HOM05D000399 ORTHO05D000304 9.7e-20 100.9 155 37.4
Medtr4g116860 Medicago truncatula HOM05D000399 ORTHO05D000304 9.7e-20 100.9 150 41.3
Lj4g0019891 Lotus japonicus HOM05D000399 ORTHO05D000304 2.2e-19 99.8 149 40.3
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 4.8e-19 98.6 202 33.7
EL10Ac8g18835 Beta vulgaris HOM05D000399 ORTHO05D000304 8.2e-19 97.8 173 36.4
Thhalv10012426m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 8.2e-19 97.8 136 41.2
EL10Ac8g18832 Beta vulgaris HOM05D000399 ORTHO05D000304 1.4e-18 97.1 171 36.3
CsaV3_1G028590 Cucumis sativus L. HOM05D000399 ORTHO05D000304 7.0e-18 94.7 155 41.3
Carub.0006s1871 Capsella rubella HOM05D000399 ORTHO05D000304 9.1e-18 94.4 136 39.7
BcaB08g36493 Brassica carinata HOM05D000399 ORTHO05D000304 1.6e-17 93.6 161 40.4
Sp6g24100 Schrenkiella parvula HOM05D000399 ORTHO05D000304 1.6e-17 93.6 146 40.4
TPR.G15773 Trifolium pratense HOM05D000399 ORTHO05D000304 3.5e-17 92.4 157 40.8
AL6G31870 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 5.9e-17 91.7 136 38.2
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 5.9e-17 91.7 167 34.1
MELO3C010254.2 Cucumis melo HOM05D000399 ORTHO05D000304 7.7e-17 91.3 152 39.5
Hund21616 Selenicereus undatus HOM05D000399 ORTHO05D000304 1.3e-16 90.5 168 36.3
AUR62011271 Chenopodium quinoa HOM05D000399 ORTHO05D000304 2.2e-16 89.7 170 37.1
Nn8g39754 Nelumbo nucifera HOM05D000399 ORTHO05D000304 5.0e-16 88.6 145 40.0
Zm00001eb426330 Zea mays HOM05D000399 ORTHO05D000304 6.5e-16 88.2 146 38.4
CARHR192510 Cardamine hirsuta HOM05D000399 ORTHO05D000304 1.5e-15 87.0 149 36.9
AT5G20320 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 2.5e-15 86.3 136 36.8
Aqoxy7G03507 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 3.2e-15 85.9 154 39.0
C09p55870 Brassica napus HOM05D000399 ORTHO05D000304 4.2e-15 85.5 149 37.6
BolC9t58455H Brassica oleracea HOM05D000399 ORTHO05D000304 4.2e-15 85.5 149 37.6
Os04g0509300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 4.2e-15 85.5 159 37.1
A10p19620 Brassica napus HOM05D000399 ORTHO05D000304 5.5e-15 85.1 149 37.6
BraA10t44037Z Brassica rapa HOM05D000399 ORTHO05D000304 7.2e-15 84.7 149 38.3
MSTRG.19631 Avicennia marina HOM05D000399 ORTHO05D000304 9.4e-15 84.3 155 38.7
Ah.09g226570 Amaranthus hybridus HOM05D000399 ORTHO05D000304 1.6e-14 83.6 168 35.1
Sed0002244 Sechium edule HOM05D000399 ORTHO05D000304 2.1e-14 83.2 151 37.7
Aa31LG1G14290 Aethionema arabicum HOM05D000399 ORTHO05D000304 4.7e-14 82.0 170 35.3
Nn2g12266 Nelumbo nucifera HOM05D000399 ORTHO05D010012 8.0e-14 81.3 148 35.8
SalBow1G6743 Salvia bowleyana HOM05D000399 ORTHO05D000304 2.3e-13 79.7 149 35.6
unitig_46.g18390 Utricularia gibba HOM05D000399 ORTHO05D000304 3.0e-13 79.3 155 33.5
Sc08g0005100 Simmondsia chinensis HOM05D000399 ORTHO05D010012 5.2e-13 78.6 232 28.0
CSS0047995 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.2e-12 77.4 58 63.8
COL.COLO4_18728 Corchorus olitorius HOM05D000399 ORTHO05D000304 2.2e-11 73.2 84 50.0
ATR0629G135 Amborella trichopoda HOM05D000399 ORTHO05D000304 8.2e-11 71.2 161 31.1
Lj7A451G34 Lonicera japonica HOM05D000399 ORTHO05D000304 5.3e-10 68.6 113 38.9
Hma1.2p1_0182F.1_g080660 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 7.0e-10 68.2 60 65.0
Cpa.g.sc397.6 Carica papaya HOM05D000361 ORTHO05D008498 1.0e-08 64.3 57 47.4
HPP92_005311 Vanilla planifolia HOM05D000399 ORTHO05D000304 2.2e-08 63.2 151 29.1
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 2.9e-08 62.8 142 31.7
QL02p091637 Quercus lobata HOM05D000399 ORTHO05D000304 2.9e-08 62.8 42 78.6
QL02p091694 Quercus lobata HOM05D000399 ORTHO05D000304 2.9e-08 62.8 42 78.6
Cfa001902 Carpinus fangiana HOM05D000399 ORTHO05D010012 3.8e-08 62.4 134 34.3
Glyma.15G004500 Glycine max HOM05D000399 ORTHO05D010012 8.5e-08 61.2 60 48.3
Lj3g0003967 Lotus japonicus HOM05D000399 ORTHO05D010012 8.5e-08 61.2 38 65.8
Manes.04G105300 Manihot esculenta HOM05D000399 ORTHO05D010012 1.1e-07 60.8 37 67.6
CsaV3_4G001760 Cucumis sativus L. HOM05D000399 ORTHO05D010012 1.5e-07 60.5 47 51.1
QL05p034335 Quercus lobata HOM05D000399 ORTHO05D010012 3.2e-07 59.3 44 56.8
arahy.Tifrunner.gnm1.ann1.E6VFRG Arachis hypogaea HOM05D000399 ORTHO05D010012 9.4e-07 57.8 50 56.0
ClCG07G012380 Citrullus lanatus HOM05D000399 ORTHO05D010012 9.4e-07 57.8 71 36.6
Manes.11G064002 Manihot esculenta HOM05D000399 ORTHO05D010012 1.6e-06 57.0 52 48.1
Psat5g304480 Pisum sativum HOM05D000399 ORTHO05D010012 1.6e-06 57.0 65 44.6
VMungo1080G1791 Vigna mungo HOM05D000399 ORTHO05D010012 1.6e-06 57.0 121 36.4
Ciclev10026528m.g Citrus clementina HOM05D000399 ORTHO05D010012 2.1e-06 56.6 69 43.5
TWI18G0904 Tripterygium wilfordii HOM05D000399 ORTHO05D010012 3.6e-06 55.8 38 63.2
Nitab4.5_0001454g0050 Nicotiana tabacum HOM05D000399 ORTHO05D010012 6.1e-06 55.1 40 60.0
MELO3C017858.2 Cucumis melo HOM05D000399 ORTHO05D010012 8.0e-06 54.7 74 36.5
Gohir.A09G091200 Gossypium hirsutum HOM05D000399 ORTHO05D010012 8.0e-06 54.7 37 59.5


User provided reference genes

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