Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046314 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 4.3e-29 130.6 62 100.0
CSS0027607 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 9.5e-29 129.4 62 98.4
CSS0044065 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 3.0e-27 124.4 62 93.5
CSS0025289 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 3.7e-25 117.5 64 92.2
Oeu054128.1 Olea europaea HOM05D002199 ORTHO05D004947 2.8e-12 74.7 36 86.1
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 3.6e-12 74.3 36 86.1
Atru.chr5.1170 Acer truncatum HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Atru.chr5.2688 Acer truncatum HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Actinidia21055 Actinidia chinensis HOM05D000147 ORTHO05D001254 1.4e-11 72.4 31 96.8
Aa31LG5G15860 Aethionema arabicum HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
ATR0796G324 Amborella trichopoda HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
AagrBONN_evm.TU.Sc2ySwM_228.5267 Anthoceros agrestis HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Aqoxy2G02974 Aquilegia oxysepala HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Aqoxy5G00738 Aquilegia oxysepala HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
AL6G39230 Arabidopsis lyrata HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
AT5G27720 Arabidopsis thaliana HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
arahy.Tifrunner.gnm1.ann1.BKDY12 Arachis hypogaea HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
MSTRG.16392 Avicennia marina HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
MSTRG.21624 Avicennia marina HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
EL10Ac7g17474 Beta vulgaris HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
BcaB04g19685 Brassica carinata HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
BcaC04g23643 Brassica carinata HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
A06p37360 Brassica napus HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
A09p05420 Brassica napus HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
C07p41100 Brassica napus HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
C09p05900 Brassica napus HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.4e-11 72.4 31 96.8
BolC7t44637H Brassica oleracea HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
BolC9t53516H Brassica oleracea HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
BraA06t26659Z Brassica rapa HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
BraA09t36180Z Brassica rapa HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
CSS0007987 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
CSS0020039 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
CSS0029265 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
CANSAT25G1293 Cannabis sativa HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
CANSAT25G3340 Cannabis sativa HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Carub.0006s2485 Capsella rubella HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
CAN.G1459.13 Capsicum annuum HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
CARHR186240 Cardamine hirsuta HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Cpa.g.sc9.221 Carica papaya HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
CiPaw.07G107000 Carya illinoinensis HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
CiPaw.08G096800 Carya illinoinensis HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.4e-11 72.4 31 96.8
CDE11G1052 Ceratophyllum demersum HOM05D005808 ORTHO05D006196 1.4e-11 72.4 31 96.8
AUR62008655 Chenopodium quinoa HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
AUR62033113 Chenopodium quinoa HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Ca_09150_v3 Cicer arietinum L. HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Ca_10348_v3 Cicer arietinum L. HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
ClCG09G010120 Citrullus lanatus HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Ciclev10002769m.g Citrus clementina HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Ciclev10022685m.g Citrus clementina HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Cc02_g34160 Coffea canephora HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
COL.COLO4_23366 Corchorus olitorius HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Haze_04137 Corylus avellana HOM05D001134 ORTHO05D001035 1.4e-11 72.4 31 96.8
Haze_04909 Corylus avellana HOM05D002199 ORTHO05D007829 1.4e-11 72.4 31 96.8
MELO3C018097.2 Cucumis melo HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
MELO3C024092.2 Cucumis melo HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
CsaV3_4G030890 Cucumis sativus L. HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
CsaV3_7G024630 Cucumis sativus L. HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 1.4e-11 72.4 31 96.8
Dinv19707 Davidia involucrata HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Dinv40337 Davidia involucrata HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Duzib133G1030 Durio zibethinus HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Duzib211G0610 Durio zibethinus HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
ECA248G3217 Erigeron canadensis HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Migut.D00203 Erythranthe guttata HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Eucgr.K03467 Eucalyptus grandis HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Thhalv10021732m.g Eutrema salsugineum HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
FvH4_2g25520 Fragaria vesca HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
FAN15G0019 Fragaria x ananassa HOM05D002199 ORTHO05D007829 1.4e-11 72.4 31 96.8
FAN20G0797 Fragaria x ananassa HOM05D002199 ORTHO05D007829 1.4e-11 72.4 31 96.8
FAN24G1953 Fragaria x ananassa HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
FAN27G3300 Fragaria x ananassa HOM05D002199 ORTHO05D007829 1.4e-11 72.4 31 96.8
Glyma.02G155300 Glycine max HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Glyma.03G213600 Glycine max HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Glyma.10G019100 Glycine max HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Glyma.19G210402 Glycine max HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Gohir.A08G042600 Gossypium hirsutum HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Gohir.A12G131300 Gossypium hirsutum HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Gohir.D08G052400 Gossypium hirsutum HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Gohir.D12G135200 Gossypium hirsutum HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Gorai.004G052500 Gossypium raimondii HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Gorai.008G146200 Gossypium raimondii HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
HanXRQChr03g0074701 Helianthus annuus HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
HanXRQChr09g0248151 Helianthus annuus HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Hma1.2p1_1292F.1_g273770 Hydrangea macrophylla HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Lsat_1_v5_gn_5_190620 Lactuca sativa HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Lj1g0003572 Lotus japonicus HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Lj5g0015534 Lotus japonicus HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Lalb_Chr02g0143231 Lupinus albus HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Lalb_Chr21g0306811 Lupinus albus HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
MBI18_g08110_MAGBIO Magnolia biondii HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
MBI19_g09229_MAGBIO Magnolia biondii HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
MD03G1286000 Malus domestica HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
MD11G1305900 Malus domestica HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Manes.01G217600 Manihot esculenta HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Manes.05G063400 Manihot esculenta HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Manes.09G170401 Manihot esculenta HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Mapoly0002s0139 Marchantia polymorpha HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Medtr7g108700 Medicago truncatula HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Medtr8g058420 Medicago truncatula HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Medtr8g058537 Medicago truncatula HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Medtr8g091620 Medicago truncatula HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Nn3g21455 Nelumbo nucifera HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Nn4g25821 Nelumbo nucifera HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Nitab4.5_0003181g0010 Nicotiana tabacum HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Nitab4.5_0003844g0070 Nicotiana tabacum HOM05D001134 ORTHO05D001035 1.4e-11 72.4 31 96.8
Nitab4.5_0003917g0030 Nicotiana tabacum HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Oeu048345.1 Olea europaea HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Oeu054129.1 Olea europaea HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Os01g0256900 Oryza sativa ssp. japonica HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
PSO170G1601 Papaver somniferum HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
PSO210G6647 Papaver somniferum HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Peaxi162Scf00037g01217 Petunia axillaris HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Phvul.001G206200 Phaseolus vulgaris HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Phvul.007G144000 Phaseolus vulgaris HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Pp3c14_11180 Physcomitrium patens HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Psat3g021920 Pisum sativum HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Potri.002G205700 Populus trichocarpa HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Potri.014G130700 Populus trichocarpa HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Prupe.8G259300 Prunus persica HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
PGR044G2002 Punica granatum HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
QL12p026659 Quercus lobata HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
QL12p027276 Quercus lobata HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
RcHm_v2.0_Chr6g0293731 Rosa chinensis HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Sabra02G0153600 Salix brachista HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Sabra14G0097300 Salix brachista HOM05D002199 ORTHO05D007829 1.4e-11 72.4 31 96.8
SHI15194 Sapria himalayana HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Sp2g20890 Schrenkiella parvula HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Sp3g04360 Schrenkiella parvula HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Sed0020542 Sechium edule HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Sed0021569 Sechium edule HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Sc05g0004040 Simmondsia chinensis HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Solyc01g099740.4 Solanum lycopersicum HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Sopen01g043260 Solanum pennellii HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Sopen09g027730 Solanum pennellii HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 1.4e-11 72.4 31 96.8
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 1.4e-11 72.4 31 96.8
THA.LOC104818719 Tarenaya hassleriana HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
THA.LOC104821724 Tarenaya hassleriana HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Thecc.01G298300 Theobroma cacao HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
TPR.G34004 Trifolium pratense HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
TPR.G9614 Trifolium pratense HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
TWI14G0261 Tripterygium wilfordii HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
TWI59G0539 Tripterygium wilfordii HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
TAR362G0065 Trochodendron aralioides HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
TAR455G0001 Trochodendron aralioides HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
unitig_0.g657 Utricularia gibba HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
vmacro14997 Vaccinium macrocarpon HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
HPP92_006923 Vanilla planifolia HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
VMungo0720G1966 Vigna mungo HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
GSVIVG01027986001 Vitis vinifera HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
GSVIVG01031139001 Vitis vinifera HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Zm00001eb127790 Zea mays HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Zm00001eb333500 Zea mays HOM05D002199 ORTHO05D004947 1.4e-11 72.4 31 96.8
Medtr1g088710 Medicago truncatula HOM05D002199 ORTHO05D004947 4.0e-11 70.9 31 93.5
Hund05416 Selenicereus undatus HOM05D002199 ORTHO05D004947 4.0e-11 70.9 31 93.5
QL03p020177 Quercus lobata HOM05D002199 ORTHO05D004947 5.2e-11 70.5 31 93.5
MCO07G033 Micromonas commoda HOM05D002199 ORTHO05D004947 6.8e-11 70.1 31 90.3
Pp3c1_35400 Physcomitrium patens HOM05D002199 ORTHO05D004947 6.8e-11 70.1 31 93.5
CBR_g29529 Chara braunii HOM05D002199 ORTHO05D004947 1.2e-10 69.3 31 90.3
SMO356G0382 Selaginella moellendorffii HOM05D002199 ORTHO05D004947 1.5e-10 68.9 31 90.3
PGSC0003DMG400024713 Solanum tuberosum HOM05D001134 ORTHO05D001035 7.5e-10 66.6 28 96.4
Cre06.g251300 Chlamydomonas reinhardtii HOM05D002199 ORTHO05D004947 3.7e-09 64.3 40 65.0
Migut.D00124 Erythranthe guttata HOM05D002199 ORTHO05D004947 3.7e-09 64.3 31 90.3
PRCOL_00007270 Prasinoderma coloniale HOM05D002199 ORTHO05D004947 1.4e-08 62.4 31 80.6
Lalb_Chr06g0163431 Lupinus albus HOM05D002199 ORTHO05D004947 7.8e-07 56.6 31 83.9


User provided reference genes

Program Settings