Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046306 Camellia sinensis var. sinensis HOM05D002024 ORTHO05D004352 1.3e-82 309.7 153 100.0
CSS0030941 Camellia sinensis var. sinensis HOM05D002024 ORTHO05D004352 1.4e-60 236.5 126 94.4
vmacro07561 Vaccinium macrocarpon HOM05D002024 ORTHO05D004352 3.7e-50 201.8 126 77.8
Cc06_g17310 Coffea canephora HOM05D002024 ORTHO05D004352 6.3e-50 201.1 125 76.8
Phvul.004G073900 Phaseolus vulgaris HOM05D002024 ORTHO05D004352 8.3e-50 200.7 144 67.4
Atru.chr2.1480 Acer truncatum HOM05D002024 ORTHO05D004352 1.4e-49 199.9 121 79.3
Rhsim03G0051100 Rhododendron simsii HOM05D002024 ORTHO05D004352 1.8e-49 199.5 126 77.8
MD14G1006500 Malus domestica HOM05D002024 ORTHO05D004352 2.4e-49 199.1 123 77.2
Cc00_g10130 Coffea canephora HOM05D002024 ORTHO05D004352 3.1e-49 198.7 125 75.2
VMungo0464G1034 Vigna mungo HOM05D002024 ORTHO05D004352 3.1e-49 198.7 144 66.7
GSVIVG01029953001 Vitis vinifera HOM05D002024 ORTHO05D004352 4.1e-49 198.4 126 77.8
Medtr6g027760 Medicago truncatula HOM05D002024 ORTHO05D004352 5.4e-49 198.0 126 74.6
MD12G1009000 Malus domestica HOM05D002024 ORTHO05D004352 7.0e-49 197.6 119 79.0
AUR62041184 Chenopodium quinoa HOM05D002024 ORTHO05D004352 2.7e-48 195.7 125 72.0
TPR.G29868 Trifolium pratense HOM05D002024 ORTHO05D004352 2.7e-48 195.7 133 70.7
TAR623G1628 Trochodendron aralioides HOM05D002024 ORTHO05D004352 3.5e-48 195.3 126 75.4
Glyma.05G089300 Glycine max HOM05D002024 ORTHO05D004352 4.5e-48 194.9 142 66.2
MELO3C008822.2 Cucumis melo HOM05D002024 ORTHO05D004352 5.9e-48 194.5 148 66.2
Glyma.17G187400 Glycine max HOM05D002024 ORTHO05D004352 5.9e-48 194.5 139 67.6
Prupe.7G010800 Prunus persica HOM05D002024 ORTHO05D004352 1.0e-47 193.7 123 77.2
Haze_20441 Corylus avellana HOM05D002024 ORTHO05D004352 1.3e-47 193.4 125 75.2
CsaV3_4G012120 Cucumis sativus L. HOM05D002024 ORTHO05D004352 1.3e-47 193.4 125 74.4
Migut.J00772 Erythranthe guttata HOM05D002024 ORTHO05D004352 1.7e-47 193.0 125 73.6
Ca_25685_v3 Cicer arietinum L. HOM05D002024 ORTHO05D004352 2.2e-47 192.6 133 69.2
Sc22g0004540 Simmondsia chinensis HOM05D002024 ORTHO05D004352 2.9e-47 192.2 121 77.7
Actinidia03934 Actinidia chinensis HOM05D002024 ORTHO05D004352 3.8e-47 191.8 126 75.4
Dinv25060 Davidia involucrata HOM05D002024 ORTHO05D004352 3.8e-47 191.8 126 73.8
Psat1g090200 Pisum sativum HOM05D002024 ORTHO05D004352 5.0e-47 191.4 126 72.2
Ah.02g115700 Amaranthus hybridus HOM05D002024 ORTHO05D004352 6.5e-47 191.0 147 63.9
Lj2g0020360 Lotus japonicus HOM05D002024 ORTHO05D004352 6.5e-47 191.0 126 72.2
Nitab4.5_0000098g0220 Nicotiana tabacum HOM05D002024 ORTHO05D004352 6.5e-47 191.0 125 74.4
Nitab4.5_0005685g0010 Nicotiana tabacum HOM05D002024 ORTHO05D004352 6.5e-47 191.0 125 74.4
arahy.Tifrunner.gnm1.ann1.9M8SYH Arachis hypogaea HOM05D002024 ORTHO05D004352 8.5e-47 190.7 151 62.3
arahy.Tifrunner.gnm1.ann1.S92YTY Arachis hypogaea HOM05D002024 ORTHO05D004352 8.5e-47 190.7 151 62.3
Lsat_1_v5_gn_2_103580 Lactuca sativa HOM05D002024 ORTHO05D004352 8.5e-47 190.7 125 71.2
THA.LOC104821442 Tarenaya hassleriana HOM05D002024 ORTHO05D004352 8.5e-47 190.7 142 65.5
Duzib128G1716 Durio zibethinus HOM05D002024 ORTHO05D004352 1.5e-46 189.9 144 66.0
HanXRQChr14g0453601 Helianthus annuus HOM05D002024 ORTHO05D004352 1.5e-46 189.9 140 65.0
Hma1.2p1_0106F.1_g051130 Hydrangea macrophylla HOM05D002024 ORTHO05D004352 1.5e-46 189.9 142 66.9
Nn6g32382 Nelumbo nucifera HOM05D002024 ORTHO05D004352 1.5e-46 189.9 132 71.2
TWI60G0427 Tripterygium wilfordii HOM05D002024 ORTHO05D004352 1.5e-46 189.9 125 71.2
EL10Ac5g11731 Beta vulgaris HOM05D002024 ORTHO05D004352 1.9e-46 189.5 128 68.8
Cfa017696 Carpinus fangiana HOM05D002024 ORTHO05D004352 2.5e-46 189.1 125 74.4
COL.COLO4_28619 Corchorus olitorius HOM05D002024 ORTHO05D004352 2.5e-46 189.1 120 75.0
SGA_v2.0_scaffold112G31637 Striga asiatica HOM05D002024 ORTHO05D004352 2.5e-46 189.1 145 65.5
Duzib106G0860 Durio zibethinus HOM05D002024 ORTHO05D004352 3.2e-46 188.7 125 72.0
SGA_v2.0_scaffold31G12789 Striga asiatica HOM05D002024 ORTHO05D004352 3.2e-46 188.7 125 70.4
Lalb_Chr02g0157321 Lupinus albus HOM05D002024 ORTHO05D004352 7.2e-46 187.6 126 71.4
Duzib177G0567 Durio zibethinus HOM05D002024 ORTHO05D004352 1.2e-45 186.8 120 73.3
Hund15117 Selenicereus undatus HOM05D002024 ORTHO05D004352 1.6e-45 186.4 121 74.4
Thecc.05G244100 Theobroma cacao HOM05D002024 ORTHO05D004352 1.6e-45 186.4 139 65.5
Sed0002639 Sechium edule HOM05D002024 ORTHO05D004352 2.7e-45 185.7 141 63.8
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 3.6e-45 185.3 120 73.3
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 3.6e-45 185.3 120 73.3
Sabra13G0056000 Salix brachista HOM05D002024 ORTHO05D004352 4.7e-45 184.9 137 65.7
PGSC0003DMG400020924 Solanum tuberosum HOM05D002024 ORTHO05D004352 4.7e-45 184.9 125 72.0
Lalb_Chr06g0174121 Lupinus albus HOM05D002024 ORTHO05D004352 6.1e-45 184.5 127 70.1
Manes.08G154300 Manihot esculenta HOM05D002024 ORTHO05D004352 8.0e-45 184.1 126 71.4
QL07p017660 Quercus lobata HOM05D002024 ORTHO05D004352 8.0e-45 184.1 120 75.0
Solyc10g018520.1 Solanum lycopersicum HOM05D002024 ORTHO05D004352 8.0e-45 184.1 125 71.2
Sopen10g008230 Solanum pennellii HOM05D002024 ORTHO05D004352 8.0e-45 184.1 125 71.2
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 1.0e-44 183.7 120 72.5
Peaxi162Scf00905g00018 Petunia axillaris HOM05D002024 ORTHO05D004352 1.4e-44 183.3 121 74.4
Gohir.A11G231400 Gossypium hirsutum HOM05D002024 ORTHO05D004352 1.8e-44 183.0 124 69.4
AL7G44760 Arabidopsis lyrata HOM05D002024 ORTHO05D004352 2.3e-44 182.6 148 60.8
CAN.G809.7 Capsicum annuum HOM05D002024 ORTHO05D004352 2.3e-44 182.6 125 70.4
Eucgr.A02131 Eucalyptus grandis HOM05D002024 ORTHO05D004352 2.3e-44 182.6 121 72.7
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 2.3e-44 182.6 120 71.7
Gohir.A13G164100 Gossypium hirsutum HOM05D002024 ORTHO05D004352 2.3e-44 182.6 124 69.4
THA.LOC104804880 Tarenaya hassleriana HOM05D002024 ORTHO05D004352 2.3e-44 182.6 121 69.4
CiPaw.09G169000 Carya illinoinensis HOM05D002024 ORTHO05D004352 4.0e-44 181.8 125 69.6
Gohir.D11G242700 Gossypium hirsutum HOM05D002024 ORTHO05D004352 4.0e-44 181.8 139 64.0
Gohir.D13G167000 Gossypium hirsutum HOM05D002024 ORTHO05D004352 4.0e-44 181.8 144 63.9
Gorai.007G256900 Gossypium raimondii HOM05D002024 ORTHO05D004352 4.0e-44 181.8 139 64.0
PGR042G1807 Punica granatum HOM05D002024 ORTHO05D004352 4.0e-44 181.8 128 67.2
Sed0002714 Sechium edule HOM05D002024 ORTHO05D004352 5.2e-44 181.4 125 69.6
DCAR_013482 Daucus carota HOM05D002024 ORTHO05D004352 6.8e-44 181.0 131 67.9
Gorai.013G195500 Gossypium raimondii HOM05D002024 ORTHO05D004352 6.8e-44 181.0 144 63.9
MBI05_g12088_MAGBIO Magnolia biondii HOM05D002024 ORTHO05D004352 8.8e-44 180.6 143 61.5
BcaB02g08047 Brassica carinata HOM05D002024 ORTHO05D004352 2.0e-43 179.5 128 68.0
Lalb_Chr14g0364731 Lupinus albus HOM05D002024 ORTHO05D004352 2.0e-43 179.5 131 67.2
Sp7g06250 Schrenkiella parvula HOM05D002024 ORTHO05D004352 2.0e-43 179.5 121 69.4
Potri.013G062800 Populus trichocarpa HOM05D002024 ORTHO05D004352 2.6e-43 179.1 125 68.8
BcaC08g44316 Brassica carinata HOM05D002024 ORTHO05D004352 3.4e-43 178.7 128 67.2
C06p17400 Brassica napus HOM05D002024 ORTHO05D004352 3.4e-43 178.7 128 67.2
BolC6t36935H Brassica oleracea HOM05D002024 ORTHO05D004352 3.4e-43 178.7 128 67.2
CARHR216730 Cardamine hirsuta HOM05D002024 ORTHO05D004352 5.7e-43 177.9 131 64.9
Glyma.05G079600 Glycine max HOM05D002024 ORTHO05D004352 7.5e-43 177.6 127 69.3
Aqoxy1G00536 Aquilegia oxysepala HOM05D002024 ORTHO05D004352 9.8e-43 177.2 126 67.5
ClCG04G005460 Citrullus lanatus HOM05D002024 ORTHO05D004352 9.8e-43 177.2 167 56.9
ECA238G4379 Erigeron canadensis HOM05D002024 ORTHO05D004352 9.8e-43 177.2 141 59.6
HanXRQChr07g0197171 Helianthus annuus HOM05D002024 ORTHO05D004352 1.3e-42 176.8 125 67.2
Potri.019G038701 Populus trichocarpa HOM05D002024 ORTHO05D004352 1.3e-42 176.8 126 68.3
Ciclev10018753m.g Citrus clementina HOM05D002024 ORTHO05D004352 1.7e-42 176.4 125 66.4
A05p16460 Brassica napus HOM05D002024 ORTHO05D004352 2.2e-42 176.0 128 66.4
BraA05t20551Z Brassica rapa HOM05D002024 ORTHO05D004352 2.2e-42 176.0 128 66.4
Thhalv10003636m.g Eutrema salsugineum HOM05D002024 ORTHO05D004352 2.2e-42 176.0 122 68.0
Aqoxy2G00589 Aquilegia oxysepala HOM05D002024 ORTHO05D004352 2.8e-42 175.6 133 60.9
BcaC09g49622 Brassica carinata HOM05D002024 ORTHO05D004352 2.8e-42 175.6 144 60.4
Carub.0007s3168 Capsella rubella HOM05D002024 ORTHO05D004352 2.8e-42 175.6 131 64.9
BcaB04g20134 Brassica carinata HOM05D002024 ORTHO05D004352 6.3e-42 174.5 126 65.1
AT5G35910 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 8.3e-42 174.1 122 67.2
CDE10G0566 Ceratophyllum demersum HOM05D002024 ORTHO05D004352 8.3e-42 174.1 128 64.8
PSO339G0006 Papaver somniferum HOM05D002024 ORTHO05D004352 8.3e-42 174.1 121 67.8
PSO384G0657 Papaver somniferum HOM05D002024 ORTHO05D004352 8.3e-42 174.1 121 67.8
Lj1g0005341 Lotus japonicus HOM05D002024 ORTHO05D004352 1.4e-41 173.3 124 70.2
C01p34390 Brassica napus HOM05D002024 ORTHO05D004352 3.1e-41 172.2 126 65.1
BolC1t03409H Brassica oleracea HOM05D002024 ORTHO05D004352 3.1e-41 172.2 126 65.1
AUR62038435 Chenopodium quinoa HOM05D002024 ORTHO05D004352 4.1e-41 171.8 160 55.6
SpUn0001_0780 Schrenkiella parvula HOM05D002024 ORTHO05D004352 5.4e-41 171.4 120 66.7
Aa31LG9G18040 Aethionema arabicum HOM05D002024 ORTHO05D004352 7.0e-41 171.0 133 62.4
AL1G64840 Arabidopsis lyrata HOM05D002024 ORTHO05D004352 1.2e-40 170.2 127 63.0
A01p26970 Brassica napus HOM05D002024 ORTHO05D004352 2.0e-40 169.5 126 64.3
BraA01t02832Z Brassica rapa HOM05D002024 ORTHO05D004352 2.0e-40 169.5 126 64.3
Ca_08301_v3 Cicer arietinum L. HOM05D002024 ORTHO05D004352 2.0e-40 169.5 125 66.4
RcHm_v2.0_Chr3g0496321 Rosa chinensis HOM05D002024 ORTHO05D004352 3.5e-40 168.7 110 71.8
CDE10G1351 Ceratophyllum demersum HOM05D002024 ORTHO05D004352 4.5e-40 168.3 128 64.1
DCAR_009083 Daucus carota HOM05D002024 ORTHO05D004352 1.3e-39 166.8 153 54.2
Gorai.013G113400 Gossypium raimondii HOM05D002024 ORTHO05D004352 1.3e-39 166.8 120 67.5
unitig_22.g5158 Utricularia gibba HOM05D002024 ORTHO05D004352 2.9e-39 165.6 134 61.2
Lsat_1_v5_gn_6_31721 Lactuca sativa HOM05D002024 ORTHO05D004352 3.8e-39 165.2 125 64.0
AT1G54440 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 1.1e-38 163.7 128 60.9
HanXRQChr01g0019161 Helianthus annuus HOM05D002024 ORTHO05D004352 1.1e-38 163.7 121 64.5
Gohir.D13G101300 Gossypium hirsutum HOM05D002024 ORTHO05D004352 1.5e-38 163.3 120 66.7
Gohir.A13G097300 Gossypium hirsutum HOM05D002024 ORTHO05D004352 4.3e-38 161.8 117 65.8
Aa31LG2G1850 Aethionema arabicum HOM05D002024 ORTHO05D004352 7.3e-38 161.0 121 62.8
Phvul.001G114400 Phaseolus vulgaris HOM05D002024 ORTHO05D004352 9.5e-38 160.6 139 58.3
CANSAT78G1633 Cannabis sativa HOM05D002024 ORTHO05D004352 1.6e-37 159.8 121 60.3
ATR0697G132 Amborella trichopoda HOM05D002024 ORTHO05D004352 2.1e-37 159.5 125 59.2
Carub.0002s0944 Capsella rubella HOM05D002024 ORTHO05D004352 3.6e-37 158.7 126 60.3
HanXRQChr15g0496011 Helianthus annuus HOM05D002168 ORTHO05D002277 4.7e-37 158.3 125 59.2
HPP92_007980 Vanilla planifolia HOM05D002024 ORTHO05D004352 6.1e-37 157.9 125 60.8
CARHR055540 Cardamine hirsuta HOM05D002024 ORTHO05D004352 8.0e-37 157.5 126 60.3
TPR.G17861 Trifolium pratense HOM05D002024 ORTHO05D004352 2.3e-36 156.0 123 63.4
Glyma.19G115100 Glycine max HOM05D002024 ORTHO05D004352 2.0e-35 152.9 133 59.4
Medtr7g086370 Medicago truncatula HOM05D002024 ORTHO05D004352 2.0e-35 152.9 125 61.6
HanXRQChr10g0278481 Helianthus annuus HOM05D002024 ORTHO05D004352 7.5e-35 151.0 107 66.4
Cpa.g.sc161.19 Carica papaya HOM05D002024 ORTHO05D004352 1.7e-31 139.8 101 65.3
Lj1C1068G14 Lonicera japonica HOM05D002024 ORTHO05D004352 5.0e-31 138.3 138 56.5
ECA233G2263 Erigeron canadensis HOM05D002024 ORTHO05D004352 4.3e-30 135.2 125 52.8
Zm00001eb004370 Zea mays HOM05D002024 ORTHO05D004352 4.3e-30 135.2 125 53.6
SEGI_14026 Sequoiadendron giganteum HOM05D002024 ORTHO05D004352 2.1e-29 132.9 105 57.1
SEGI_34394 Sequoiadendron giganteum HOM05D002024 ORTHO05D004352 2.1e-29 132.9 105 57.1
Zm00001eb047500 Zea mays HOM05D002024 ORTHO05D004352 2.1e-29 132.9 138 45.7
Thhalv10023339m.g Eutrema salsugineum HOM05D002024 ORTHO05D004352 2.6e-27 125.9 136 50.0
Actinidia37806 Actinidia chinensis HOM05D002024 ORTHO05D004352 2.4e-25 119.4 102 63.7
HanXRQChr10g0303791 Helianthus annuus HOM05D002024 ORTHO05D004352 2.0e-24 116.3 89 60.7
Glyma.05G079550 Glycine max HOM05D002024 ORTHO05D004352 1.0e-23 114.0 88 64.8
HanXRQChr06g0183141 Helianthus annuus HOM05D002024 ORTHO05D004352 1.6e-21 106.7 120 47.5
VMungo1383G3115 Vigna mungo HOM05D002024 ORTHO05D000001 2.3e-20 102.8 110 50.0
EL10Ac2g04414 Beta vulgaris HOM05D002024 ORTHO05D004352 4.0e-20 102.1 124 46.0
Pp3c4_22010 Physcomitrium patens HOM05D002024 ORTHO05D004352 6.8e-20 101.3 142 36.6
SMO351G0038 Selaginella moellendorffii HOM05D002024 ORTHO05D004352 9.8e-19 97.4 103 45.6
AUR62035829 Chenopodium quinoa HOM05D002024 ORTHO05D004352 2.2e-18 96.3 92 53.3
AagrBONN_evm.TU.Sc2ySwM_228.1889 Anthoceros agrestis HOM05D002024 ORTHO05D004352 6.4e-18 94.7 107 43.9
AUR62009458 Chenopodium quinoa HOM05D002024 ORTHO05D004352 1.2e-16 90.5 103 50.5
BcaB02g08049 Brassica carinata HOM05D002024 ORTHO05D004352 1.5e-14 83.6 47 80.9
CBR_g19347 Chara braunii HOM05D002024 ORTHO05D004352 2.8e-13 79.3 121 38.0
Mapoly0003s0296 Marchantia polymorpha HOM05D002024 ORTHO05D004352 8.1e-13 77.8 113 37.2
arahy.Tifrunner.gnm1.ann1.91ILIR Arachis hypogaea HOM05D002024 ORTHO05D004352 5.8e-11 71.6 43 74.4
arahy.Tifrunner.gnm1.ann1.A2IDII Arachis hypogaea HOM05D002024 ORTHO05D004352 5.8e-11 71.6 43 74.4
BcaC08g44317 Brassica carinata HOM05D002024 ORTHO05D004352 6.4e-10 68.2 74 50.0
VMungo1383G1234 Vigna mungo HOM05D002024 ORTHO05D009409 3.2e-09 65.9 42 66.7
Psat3g086680 Pisum sativum HOM05D002024 ORTHO05D004352 1.2e-08 63.9 42 69.0
MCO07G578 Micromonas commoda HOM05D002024 ORTHO05D004352 1.7e-07 60.1 108 32.4
Pp3c18_1700 Physcomitrium patens HOM05D002024 ORTHO05D007288 8.6e-07 57.8 87 37.9
Sc06g0009580 Simmondsia chinensis HOM05D002024 ORTHO05D007288 7.3e-06 54.7 113 32.7
ECA236G2373 Erigeron canadensis HOM05D002024 ORTHO05D007288 9.6e-06 54.3 85 38.8


User provided reference genes

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