Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 3.1e-258 894.8 521 100.0
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 3.8e-203 711.8 520 78.7
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 3.5e-201 705.3 520 81.9
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 8.7e-200 700.7 521 79.8
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 1.5e-196 689.9 521 78.7
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 1.7e-192 676.4 509 76.6
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 1.3e-182 643.7 520 75.0
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 2.8e-182 642.5 513 70.6
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 9.9e-180 634.0 521 73.9
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 1.9e-175 619.8 518 67.8
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 1.3e-174 617.1 516 69.4
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 1.3e-174 617.1 527 69.6
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 2.4e-173 612.8 537 68.2
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 7.6e-172 607.8 521 71.0
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 1.0e-171 607.4 515 70.5
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 2.2e-171 606.3 524 66.2
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 4.9e-171 605.1 522 67.8
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 1.1e-170 604.0 525 68.2
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 7.1e-170 601.3 515 69.7
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 9.3e-170 600.9 526 66.7
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 1.2e-169 600.5 525 73.0
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 1.6e-169 600.1 406 78.8
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 1.6e-169 600.1 519 66.5
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 1.8e-168 596.7 514 68.1
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 8.7e-168 594.3 520 66.3
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 2.5e-167 592.8 525 72.6
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 3.3e-167 592.4 521 71.0
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 4.3e-167 592.0 521 70.8
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 5.7e-167 591.7 521 65.5
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 2.0e-164 583.2 518 66.2
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 3.4e-164 582.4 522 66.1
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 3.8e-163 578.9 444 74.3
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 6.5e-163 578.2 521 71.8
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 8.5e-163 577.8 520 66.9
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 2.5e-162 576.2 437 74.1
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 4.2e-162 575.5 534 63.9
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 7.2e-162 574.7 528 64.6
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 9.4e-162 574.3 519 68.0
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 2.7e-161 572.8 511 65.8
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 3.0e-160 569.3 451 71.4
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 3.9e-160 568.9 406 75.9
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 5.1e-160 568.5 509 69.7
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 4.3e-159 565.5 508 66.3
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 7.4e-159 564.7 600 54.8
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 1.7e-158 563.5 525 62.9
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 2.2e-158 563.1 485 68.7
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 2.8e-158 562.8 506 68.0
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 8.2e-158 561.2 525 63.4
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 5.3e-157 558.5 527 63.2
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 5.9e-156 555.1 522 63.0
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 5.9e-156 555.1 527 62.8
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 2.9e-155 552.7 496 67.1
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 3.8e-155 552.4 527 65.3
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 5.0e-155 552.0 491 66.4
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 8.5e-155 551.2 443 71.1
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 1.9e-154 550.1 406 73.6
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 4.2e-154 548.9 531 65.2
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 9.4e-154 547.7 499 64.7
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 8.8e-152 541.2 501 64.5
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 8.8e-152 541.2 511 64.2
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 2.6e-151 539.7 531 61.8
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 3.3e-151 539.3 501 66.5
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 6.3e-150 535.0 448 67.6
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 2.4e-149 533.1 524 61.8
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 4.1e-149 532.3 439 67.9
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 7.0e-149 531.6 519 63.8
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 9.1e-149 531.2 441 66.9
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 9.1e-149 531.2 384 76.3
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 1.2e-148 530.8 524 62.8
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 5.9e-148 528.5 444 69.6
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 1.0e-147 527.7 515 67.6
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 2.2e-147 526.6 523 63.9
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 2.9e-147 526.2 527 63.4
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 6.5e-147 525.0 518 58.7
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 1.5e-146 523.9 527 63.0
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 2.5e-146 523.1 519 62.2
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 9.4e-146 521.2 405 72.8
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 1.6e-145 520.4 526 62.9
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 3.9e-144 515.8 500 59.6
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 2.0e-143 513.5 522 64.8
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 2.2e-142 510.0 560 58.9
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 4.8e-142 508.8 527 61.3
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 7.0e-141 505.0 524 55.5
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 5.2e-136 488.8 528 57.4
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 5.9e-132 475.3 442 63.6
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 2.9e-131 473.0 506 51.4
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 8.5e-131 471.5 417 67.1
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 9.4e-130 468.0 412 61.9
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.6e-129 467.2 537 52.1
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 2.7e-129 466.5 442 62.0
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 1.8e-128 463.8 382 69.1
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 2.8e-126 456.4 527 54.1
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 2.4e-125 453.4 515 54.6
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 1.2e-124 451.1 483 55.7
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 3.8e-123 446.0 387 62.8
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 5.0e-123 445.7 516 60.3
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 2.8e-121 439.9 534 52.2
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 3.6e-121 439.5 509 54.2
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 3.6e-121 439.5 441 54.2
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 8.0e-121 438.3 519 56.5
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 8.0e-121 438.3 514 55.3
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 8.0e-121 438.3 514 52.1
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 1.0e-120 438.0 514 52.5
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 2.3e-120 436.8 385 61.6
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 2.3e-120 436.8 520 48.5
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 4.4e-119 432.6 519 54.9
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 1.3e-118 431.0 520 55.0
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 3.7e-118 429.5 415 58.8
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 1.8e-117 427.2 520 52.3
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 5.4e-117 425.6 512 54.5
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 7.8e-116 421.8 526 52.1
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 3.9e-115 419.5 532 51.9
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 1.3e-110 404.4 433 58.0
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 8.0e-105 385.2 456 52.4
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 1.1e-104 384.8 356 64.6
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 4.0e-104 382.9 465 52.3
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 3.3e-90 336.7 285 68.8
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 1.6e-89 334.3 267 63.7
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 1.6e-84 317.8 192 79.7
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 2.3e-83 313.9 407 50.1
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 8.7e-83 312.0 518 45.2
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 5.8e-63 246.1 470 35.1
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 5.7e-58 229.6 468 38.7
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 4.3e-50 203.4 215 50.7
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 5.9e-47 193.0 283 41.0
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 7.7e-47 192.6 423 33.8
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 5.3e-40 169.9 259 40.2
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 7.7e-23 112.8 579 23.8
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 6.5e-22 109.8 132 43.9
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 3.4e-18 97.4 85 54.1
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 1.7e-17 95.1 92 51.1
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 3.1e-16 90.9 118 44.1
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 8.5e-14 82.8 171 34.5
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 1.9e-13 81.6 165 33.9
Oeu020857.1 Olea europaea HOM05D005639 ORTHO05D290761 8.8e-11 72.8 149 55.7
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 2.0e-10 71.6 132 33.3
Nitab4.5_0002059g0020 Nicotiana tabacum HOM05D000453 ORTHO05D000387 3.5e-07 60.8 118 34.7
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 3.8e-06 57.4 260 24.2
Lsat_1_v5_gn_6_115620 Lactuca sativa HOM05D002332 ORTHO05D002509 5.0e-06 57.0 117 29.1
Rhsim12G0161600 Rhododendron simsii HOM05D000453 ORTHO05D000387 6.6e-06 56.6 117 34.2


User provided reference genes

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